FFCP PHASE1:Hg19::chr7:101917447..101917479,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1523 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2557 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=2bp_to_uc003uyz.2_5end | |||
|coexpression_cluster_id=C4636 | |||
|description=CAGE_peak_4_at_CUX1_5end | |||
|id=chr7:101917447..101917479,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.58e-32!254;CL:0000223!1.22e-09!59;CL:0000077!1.32e-09!19;CL:0000076!6.04e-09!62;CL:0000548!3.56e-08!679;CL:0000004!3.56e-08!679;CL:0000255!3.56e-08!679;CL:0000012!5.72e-08!682;CL:0002076!2.48e-07!43;CL:0000082!8.62e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0000077;1.21e-08;19!CL:0000083;4.49e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.44e-28,253;CL:0000076,1.69e-09,63;CL:0000077,1.02e-08,19;CL:0000083,6.19e-07,4;CL:0000223,9.23e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.11e-21;29!UBERON:0001041;5.19e-12;30!UBERON:0009497;1.22e-07;13 | |||
|ontology_enrichment_disease=DOID:305!3.27e-41!106;DOID:0050687!1.18e-33!143;DOID:14566!5.61e-26!239;DOID:162!1.84e-25!235;DOID:1749!5.68e-15!14;DOID:7!1.21e-08!39;DOID:299!1.25e-08!25;DOID:0050615!1.82e-08!16;DOID:1324!8.49e-08!15 | |||
|ontology_enrichment_disease_v019=DOID:1749;7.30e-13;14!DOID:305;8.74e-12;106!DOID:0050687;2.01e-08;143!DOID:1793;4.49e-07;4!DOID:1324;5.45e-07;15!DOID:4074;6.65e-07;2!DOID:4905;6.65e-07;2!DOID:3498;6.65e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.93e-44,106;DOID:0050687,7.00e-35,143;DOID:162,8.82e-27,235;DOID:14566,6.04e-26,239;DOID:1749,6.89e-13,14;DOID:1324,5.29e-07,15;DOID:1793,6.19e-07,4;DOID:4074,7.40e-07,2;DOID:4905,7.40e-07,2;DOID:3498,7.40e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.38e-19!169;UBERON:0000925!2.38e-19!169;UBERON:0006595!2.38e-19!169;UBERON:0001007!1.22e-18!155;UBERON:0001555!1.22e-18!155;UBERON:0007026!1.22e-18!155;UBERON:0004921!1.28e-16!129;UBERON:0004185!1.28e-16!129;UBERON:0000077!6.64e-16!130;UBERON:0000072!2.72e-15!46;UBERON:0008947!1.35e-14!38;UBERON:0003258!1.35e-14!38;UBERON:0001737!2.39e-14!9;UBERON:0000065!3.94e-14!53;UBERON:0001004!2.42e-13!72;UBERON:0001041!1.73e-11!98;UBERON:0005911!3.64e-10!82;UBERON:0000466!6.45e-10!126;UBERON:0000344!1.56e-09!12;UBERON:0003104!2.48e-09!238;UBERON:0009142!2.48e-09!238;UBERON:0001557!6.27e-09!19;UBERON:0000464!8.38e-09!104;UBERON:0005177!4.64e-08!107;UBERON:0001048!6.51e-08!168;UBERON:0000063!1.38e-07!97;UBERON:0000481!3.79e-07!347;UBERON:0005153!4.17e-07!37;UBERON:0004802!8.62e-07!19;UBERON:0000115!8.62e-07!19;UBERON:0003929!8.68e-07!54 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.52e-28;9!UBERON:0001557;3.52e-28;9!UBERON:0000072;2.12e-18;37!UBERON:0000065;1.41e-12;44!UBERON:0001004;1.43e-08;65!UBERON:0005911;9.82e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.52e-28,9;UBERON:0008947,1.25e-17,38;UBERON:0003258,1.25e-17,38;UBERON:0000072,3.26e-15,47;UBERON:0001041,3.27e-14,87;UBERON:0004921,7.79e-14,118;UBERON:0001007,6.06e-13,145;UBERON:0001555,6.06e-13,145;UBERON:0007026,6.06e-13,145;UBERON:0004119,6.67e-13,160;UBERON:0000925,6.67e-13,160;UBERON:0006595,6.67e-13,160;UBERON:0000065,1.16e-12,54;UBERON:0001557,2.62e-12,19;UBERON:0001004,1.63e-10,74;UBERON:0005911,3.00e-08,82;UBERON:0005177,1.50e-07,101;UBERON:0001048,4.60e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0.672325146451775,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0.443458794925128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245668634623536,0,0,0,0,1.43723628363248,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0.37223371266318,0,0,0,0,0,0,0,0,1.93260853163297,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,8.87301000298829,10.9580048550766,7.23033089650446,10.4779274095774,8.49729831960384,8.06720104977729,10.7865046528132,12.1657308377715,8.0796902958742,0,0,0,0,0,0,0,0,1.72183813960359,0.343135620597051,0,1.1240175325762,0,0,0,0,0,0,0,0,0,0,0.790204397959275,3.43394464837949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0,3.32870879020994,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0.116210378459959,0.362578348774867,0.200506470303285,0,0,0.364182336013434,1.18011973463482,0.902399225814824,0.15403067420883,0,1.46139224653261,0.211103257785751,0,0,0,0,0.812839312631559,0.501689773854853,1.01950509218015,0,0.895499018888713,0,0,1.79515087581472,0.328014645699706,1.95227036798582,0,0.27470839445503,0,0,0,0,0.096670718292122,0,0,0,0,0,0.170453254832202,0.0890320356467374,0,0.192190067365106,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,1.27948895655667,0,0,0,0,0.274537029736055,0,0.404364963146632,0,0,1.95053495635836,0,0,0.136499911407986,0,0,0,0,0,2.89387767133344,0.655894752046633,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,3.18552280775341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0.23874448473769,0.890894042497916,0,0,0,0,0,0,0,0,0,0.20453736500431,0,0,2.3365771298305,1.61119057208048,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,0,0,1.0241410345695,3.81380475439149,3.54581522651905,0,0,0,0,0,0,0,0,0,8.17038476392426,1.11538995422883,0,0,0,1.16684937732704,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68570835724488,0,0,0.176915129006678,0,0,0,0,0,0,0,0,6.84826166262314,1.21390189767046,0,0,0,0,0,0,0,0,0,0,2.56148591426813,0.277349346026277,0,10.1912093310953,1.82824333818845,0,0,1.06431964417994,1.09633975629278,0.739039113478883,0,0,0,0.137041924646751,0,0,2.93327074102205,0.64127056201227,0,1.9980960958213,0,0,0,0,0,0.471388069233591,1.08723364858891,1.67364554099733,0.509991088181609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.62402638613229,4.12079291905832,4.51603743823039,1.18112977817699,0.0846733320657845,0,0,0.160753148465019,0.137539436597234,0,0,0,0,0,0,0,0,0.179287339332845,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.8169524880672,0.704815022316672,0,0,0,0,0,0.243585196761792,1.91502377331055,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414706207840855,0,0,0,0,0,0.181848659202559,0,0,0,0.400027764663154,0,0,0,0,0,0,0.226705925512272,0.463044948647668,1.71315693154527,0.71635536432595,5.86722749605847,1.75427239662966,2.12026975135057,8.29530364564934,1.52048196587765,0.512483037175893,8.63575854327997,1.21543982470953,0,0,0,0,0,1.72041036127604,5.91673945404156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,16.0962258341682,0.11796972334774,0.550285795565037,0.924205329202706,0,0,0,0,0.40341013740704,0,0,0.49131575253029,0.443568258651136,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,1.06374456795571,0.889851215136553,0,0,0,0,2.80705868584208,0.9555033757741,0,0,0,0,0,0,0,0,0,0.591660003652827,0.170426809518315,0,0.22910686854405,0,0,1.23040974977572,0.098150233615243,0,0,0,0,0,0,0,0,0,0,3.62310824560016,0.308696632431779,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,14.1157948686277,30.8929261753298,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.305966489225945,0.534434810531121,0.275684698604535,0,0,0,0,0,0,0,0.0645889098360061,0,0.112131862580613,0,0,0,0,0.0673520530145875,0,0,1.38385556638657,0,0,1.07790242527904,0,0,0,0,0,0 | |||
|short_description=p4@CUX1 | |||
}} |
Revision as of 18:30, 22 January 2014
Short description: | p4@CUX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CUX1_5end |
Coexpression cluster: | C4636_squamous_oral_Hep2_epidermoid_mesothelioma_mucinous_ductal |
Association with transcript: | 2bp_to_uc003uyz.2_5end |
EntrezGene: | CUX1 |
HGNC: | 2557 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.44e-28 | 253 |
squamous epithelial cell | 1.69e-09 | 63 |
mesothelial cell | 1.02e-08 | 19 |
epithelial cell of pancreas | 6.19e-07 | 4 |
endodermal cell | 9.23e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.52e-28 | 9 |
respiratory primordium | 1.25e-17 | 38 |
endoderm of foregut | 1.25e-17 | 38 |
segment of respiratory tract | 3.26e-15 | 47 |
foregut | 3.27e-14 | 87 |
subdivision of digestive tract | 7.79e-14 | 118 |
digestive system | 6.06e-13 | 145 |
digestive tract | 6.06e-13 | 145 |
primitive gut | 6.06e-13 | 145 |
endoderm-derived structure | 6.67e-13 | 160 |
endoderm | 6.67e-13 | 160 |
presumptive endoderm | 6.67e-13 | 160 |
respiratory tract | 1.16e-12 | 54 |
upper respiratory tract | 2.62e-12 | 19 |
respiratory system | 1.63e-10 | 74 |
endo-epithelium | 3.00e-08 | 82 |
trunk region element | 1.50e-07 | 101 |
primordium | 4.60e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.93e-44 | 106 |
cell type cancer | 7.00e-35 | 143 |
cancer | 8.82e-27 | 235 |
disease of cellular proliferation | 6.04e-26 | 239 |
squamous cell carcinoma | 6.89e-13 | 14 |
lung cancer | 5.29e-07 | 15 |
pancreatic cancer | 6.19e-07 | 4 |
pancreas adenocarcinoma | 7.40e-07 | 2 |
pancreatic carcinoma | 7.40e-07 | 2 |
pancreatic ductal adenocarcinoma | 7.40e-07 | 2 |