FFCP PHASE1:Hg19::chr9:139094988..139095012,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8022 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6595 | |||
|TSSclassifier=strong | |||
|UniProt=E7ETP3,F1T0D9,Q9UBR4 | |||
|association_with_transcript=0bp_to_ENST00000325195,ENST00000371746,NM_014564,uc004cgz.2_5end | |||
|coexpression_cluster_id=C171 | |||
|description=CAGE_peak_1_at_LHX3_5end | |||
|id=chr9:139094988..139095012,- | |||
|ontology_enrichment_celltype=CL:0000242!3.30e-17!2;CL:0000312!2.10e-07!5;CL:0000095!6.67e-07!17;CL:0000123!6.67e-07!17 | |||
|ontology_enrichment_celltype_v019=CL:0000123;5.41e-41;2!CL:0000242;5.41e-41;2!CL:0000312;4.46e-17;5!CL:0000240;2.11e-14;6!CL:0000311;2.11e-14;6!CL:0000079;2.11e-14;6!CL:0000237;2.11e-14;6!CL:0000095;3.74e-10;17!CL:0000362;6.34e-10;9!CL:0002319;2.57e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,5.99e-41,2;CL:0000312,4.64e-17,5;CL:0000240,2.18e-14,6;CL:0000311,2.18e-14,6;CL:0000079,2.18e-14,6;CL:0000237,2.18e-14,6;CL:0000036,2.18e-14,6;CL:0000357,2.18e-14,6;CL:0000114,2.18e-14,6;CL:0000095,3.80e-10,17;CL:0000123,3.80e-10,17;CL:0000362,6.48e-10,9;CL:0002319,2.60e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000357;2.11e-14;6!CL:0000114;2.11e-14;6!UBERON:0003056;5.93e-08;3 | |||
|ontology_enrichment_disease=DOID:5409!1.77e-08!4 | |||
|ontology_enrichment_disease_v019=DOID:154;3.70e-11;2!DOID:4236;3.70e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:154,3.70e-11,2;DOID:4236,3.70e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0003296!2.54e-32!4;UBERON:0010133!2.54e-32!4;UBERON:0001894!1.38e-18!7;UBERON:0006222!1.38e-18!7;UBERON:0001905!3.30e-17!2;UBERON:0002757!3.30e-17!2;UBERON:0010134!3.30e-17!2;UBERON:0002784!3.30e-17!2;UBERON:0005408!3.30e-17!2;UBERON:0001899!3.30e-17!2;UBERON:0000007!6.23e-17!2;UBERON:0001154!5.31e-09!1;UBERON:0001153!5.31e-09!1;UBERON:0002368!1.50e-07!35;UBERON:0000966!4.29e-07!5;UBERON:0005388!4.29e-07!5;UBERON:0001802!4.29e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0003296;2.88e-79;4!UBERON:0010133;2.88e-79;4!UBERON:0001894;1.33e-45;7!UBERON:0001905;6.63e-41;2!UBERON:0002757;6.63e-41;2!UBERON:0010134;6.63e-41;2!UBERON:0005408;6.63e-41;2!UBERON:0001899;6.63e-41;2!UBERON:0000007;3.01e-40;2!UBERON:0002784;4.92e-21;4!UBERON:0002368;8.43e-09;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,2.60e-79,4;UBERON:0010133,2.60e-79,4;UBERON:0001894,1.25e-45,7;UBERON:0006222,1.25e-45,7;UBERON:0001905,5.99e-41,2;UBERON:0002757,5.99e-41,2;UBERON:0010134,5.99e-41,2;UBERON:0005408,5.99e-41,2;UBERON:0001899,5.99e-41,2;UBERON:0000007,3.01e-40,2;UBERON:0002784,4.68e-21,4;UBERON:0002368,1.74e-09,35;UBERON:0010371,4.39e-09,104;UBERON:0003056,3.72e-08,61;UBERON:0002780,5.91e-08,41;UBERON:0001890,5.91e-08,41;UBERON:0003080,5.91e-08,41;UBERON:0006240,5.91e-08,41;UBERON:0000949,1.92e-07,45;UBERON:0000955,3.15e-07,68;UBERON:0006238,3.15e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03423011972439,0,2.08349993919951,0,0,0,0,0,0.87754158861589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80784592624426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691743174681154,0,0,0,0,49.1751651097226,46.0848870982424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.1421101526972,49.7699908883859,3.64179362541979,10.0171364194571,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,24.4921098185726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0.219881033490858,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p1@LHX3 | |||
}} |
Revision as of 04:06, 23 January 2014
Short description: | p1@LHX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LHX3_5end |
Coexpression cluster: | C171_merkel_neuroblastoma_pineal_retinoblastoma_carcinoid_small_eye |
Association with transcript: | 0bp_to_ENST00000325195, ENST00000371746, NM_014564, uc004cgz.2_5end |
EntrezGene: | LHX3 |
HGNC: | 6595 |
UniProt: | E7ETP3F1T0D9Q9UBR4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 5.99e-41 | 2 |
keratinocyte | 4.64e-17 | 5 |
stratified squamous epithelial cell | 2.18e-14 | 6 |
keratin accumulating cell | 2.18e-14 | 6 |
stratified epithelial cell | 2.18e-14 | 6 |
keratinizing barrier epithelial cell | 2.18e-14 | 6 |
epithelial fate stem cell | 2.18e-14 | 6 |
stratified epithelial stem cell | 2.18e-14 | 6 |
surface ectodermal cell | 2.18e-14 | 6 |
neuron associated cell | 3.80e-10 | 17 |
neuron associated cell (sensu Vertebrata) | 3.80e-10 | 17 |
epidermal cell | 6.48e-10 | 9 |
neural cell | 2.60e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 2.60e-79 | 4 |
neuroendocrine gland | 2.60e-79 | 4 |
diencephalon | 1.25e-45 | 7 |
future diencephalon | 1.25e-45 | 7 |
pineal body | 5.99e-41 | 2 |
regional part of epithalamus | 5.99e-41 | 2 |
secretory circumventricular organ | 5.99e-41 | 2 |
circumventricular organ | 5.99e-41 | 2 |
epithalamus | 5.99e-41 | 2 |
pituitary gland | 3.01e-40 | 2 |
regional part of diencephalon | 4.68e-21 | 4 |
endocrine gland | 1.74e-09 | 35 |
ecto-epithelium | 4.39e-09 | 104 |
pre-chordal neural plate | 3.72e-08 | 61 |
regional part of forebrain | 5.91e-08 | 41 |
forebrain | 5.91e-08 | 41 |
anterior neural tube | 5.91e-08 | 41 |
future forebrain | 5.91e-08 | 41 |
endocrine system | 1.92e-07 | 45 |
brain | 3.15e-07 | 68 |
future brain | 3.15e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
mixed cell type cancer | 3.70e-11 | 2 |
carcinosarcoma | 3.70e-11 | 2 |