UBERON:0002390: Difference between revisions
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|located_in= | |located_in= | ||
|name=hematopoietic system | |name=hematopoietic system | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002193 | |part_of=UBERON:0002193 | ||
Latest revision as of 17:31, 12 September 2014
| Name: | hematopoietic system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The tissues concerned in production of the blood, including the bone marrow, liver, lymph nodes, spleen, and thymus[BTO]. Anatomical system that consists of the blood and blood forming tissues. The bodily system of organs and tissues, primarily the bone marrow, spleen, tonsils, and lymph nodes, involved in the production of blood[FD]." [BTO:0000570, http://www.thefreedictionary.com/hematopoietic+system, OMD:haematological, Wikipedia:Hematopoietic_system] | ||
| Xrefs: |
| ||
| Synonyms: |
"Blutbildungssystem" RELATED [BTO:0000570] "haematological system" EXACT [] "haematopoietic system" RELATED [] "haemopoietic system" EXACT [] "hematological system" RELATED [] "hematolymphoid system" RELATED [] "hemopoietic system" RELATED [] "organa haemopoietica" EXACT [] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_9667-MA_0002434-MIAA_0000022-XAO_0000122-ZFA_0005023 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000467(anatomical system),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| disjoint_from: | UBERON:0002405(immune system),UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system) |
| develops_from: | UBERON:0003061(blood island) |
| part_of: | UBERON:0002193(hemolymphoid system) |
Children
| disjoint from: | UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system),UBERON:0001004 (respiratory system),UBERON:0001007 (digestive system),UBERON:0001008 (renal system),UBERON:0001009 (circulatory system),UBERON:0001016 (nervous system),UBERON:0001033 (gustatory system),UBERON:0001434 (skeletal system),UBERON:0002204 (musculoskeletal system),UBERON:0002294 (biliary system),UBERON:0002330 (exocrine system) |
|---|---|
| part of: | UBERON:0000178 (blood),UBERON:0002106 (spleen),UBERON:0002370 (thymus),UBERON:0002371 (bone marrow),UBERON:0004177 (hemopoietic organ),UBERON:0012429 (hemopoietic tissue) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10025-101D7 (spleen, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10053-101G8 (blood, adult, pool1)
- 10095-102C5
- 10097-102C7
- 10192-103E3 (bone marrow, adult)
- 10424-106D1 (splenic lymphoma with villous lymphocytes cell line:SLVL)
- 10449-106F8 (cord blood derived cell line:COBL-a untreated)
... further results Mouse (Mus musculus)
- 10025-101D7 (spleen, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10053-101G8 (blood, adult, pool1)
- 10095-102C5
- 10097-102C7
- 10192-103E3 (bone marrow, adult)
- 10424-106D1 (splenic lymphoma with villous lymphocytes cell line:SLVL)
- 10449-106F8 (cord blood derived cell line:COBL-a untreated)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002390 (hematopoietic system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.58e-110 | FFCP PHASE1:Hg19::chr6:134694635..134694653,-#_f342b01d4cb7eb20c60612a97d616989 | p@chr6:134694635..134694653, - |
| 2.58e-110 | FFCP PHASE2:Hg19::chr6:134694635..134694653,-#_f342b01d4cb7eb20c60612a97d616989 | p@chr6:134694635..134694653, - |
| 2.89e-110 | FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_55ed8908e3dc1a1892338ef0bd41ff16 | p@chr16:50313426..50313459, + |
| 2.89e-110 | FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_55ed8908e3dc1a1892338ef0bd41ff16 | p@chr16:50313426..50313459, + |
| 4.8e-108 | FFCP PHASE1:Hg19::chr19:54784461..54784484,-#_35b564ba644c7fdea769bc21d6846971 | p2@LILRB2 |
| 4.8e-108 | FFCP PHASE2:Hg19::chr19:54784461..54784484,-#_35b564ba644c7fdea769bc21d6846971 | p2@LILRB2 |
| 3.93e-106 | FFCP PHASE1:Hg19::chr1:1711415..1711426,-#_3e39e2836c1a38c0c679eedda53ce1ff | p4@NADK |
| 3.93e-106 | FFCP PHASE2:Hg19::chr1:1711415..1711426,-#_3e39e2836c1a38c0c679eedda53ce1ff | p4@NADK |
| 2.07e-105 | FFCP PHASE1:Hg19::chr1:150724282..150724308,-#_f40ec9a76324549b1ff71989a7d412d7 | p8@CTSS |
| 2.07e-105 | FFCP PHASE2:Hg19::chr1:150724282..150724308,-#_f40ec9a76324549b1ff71989a7d412d7 | p8@CTSS |
| 2.38e-105 | FFCP PHASE2:Hg19::chr2:119726719..119726744,+#_01dbba8ade8eb3cdc5fe82e30a532851 | p@chr2:119726719..119726744, + |
| 2.38e-105 | FFCP PHASE1:Hg19::chr2:119726719..119726744,+#_01dbba8ade8eb3cdc5fe82e30a532851 | p@chr2:119726719..119726744, + |
| 4.18e-105 | FFCP PHASE2:Hg19::chr5:156534291..156534357,-#_13fc50d430045dd0f4d8e53bc9299136 | p4@HAVCR2 |
| 4.18e-105 | FFCP PHASE1:Hg19::chr5:156534291..156534357,-#_13fc50d430045dd0f4d8e53bc9299136 | p4@HAVCR2 |
| 3.0e-104 | FFCP PHASE1:Hg19::chr7:99971180..99971191,+#_42029068e9bca58d9a60b3be27ebe383 | p3@PILRA |
| 3.0e-104 | FFCP PHASE2:Hg19::chr7:99971180..99971191,+#_42029068e9bca58d9a60b3be27ebe383 | p3@PILRA |
| 7.83e-104 | FFCP PHASE2:Hg19::chr10:20105868..20105875,+#_d5647355c03a4e89a426b1f9538df4f3 | p8@PLXDC2 |
| 7.83e-104 | FFCP PHASE1:Hg19::chr10:20105868..20105875,+#_d5647355c03a4e89a426b1f9538df4f3 | p8@PLXDC2 |
| 1.97e-102 | FFCP PHASE2:Hg19::chr10:97457378..97457404,+#_b1d37617b143f521aa541a7d745d7822 | p@chr10:97457378..97457404, + |
| 1.97e-102 | FFCP PHASE1:Hg19::chr10:97457378..97457404,+#_b1d37617b143f521aa541a7d745d7822 | p@chr10:97457378..97457404, + |
| 4.0e-102 | FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_4357b78726a05da8cfeb03fbed0c127f | p1@CYP1B1-AS1 |
| 4.0e-102 | FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_4357b78726a05da8cfeb03fbed0c127f | p1@CYP1B1-AS1 |
| 6.74e-102 | FFCP PHASE1:Hg19::chr1:150705526..150705571,-#_5acec3067e80654e61e2dc873d16f882 | p@chr1:150705526..150705571, - |
| 6.74e-102 | FFCP PHASE2:Hg19::chr1:150705526..150705571,-#_5acec3067e80654e61e2dc873d16f882 | p@chr1:150705526..150705571, - |
| 3.93e-101 | FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_20367bbc000300b362cd98264db79980 | p7@EMILIN2 |
| 3.93e-101 | FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_20367bbc000300b362cd98264db79980 | p7@EMILIN2 |
| 1.89e-100 | FFCP PHASE2:Hg19::chr16:8738211..8738249,+#_41f967efe566a90d5516e66a1ec72196 | p@chr16:8738211..8738249, + |
| 1.89e-100 | FFCP PHASE1:Hg19::chr16:8738211..8738249,+#_41f967efe566a90d5516e66a1ec72196 | p@chr16:8738211..8738249, + |
| 3.51e-100 | FFCP PHASE1:Hg19::chr14:103587759..103587770,+#_656adc25d88e4392cb783839e5914b3a | p@chr14:103587759..103587770, + |
| 3.51e-100 | FFCP PHASE2:Hg19::chr14:103587759..103587770,+#_656adc25d88e4392cb783839e5914b3a | p@chr14:103587759..103587770, + |
| 4.01e-100 | FFCP PHASE1:Hg19::chr19:18283959..18283993,+#_1d17d1ff57920a9c460b5df388b0f5d7 | p@chr19:18283959..18283993, + |
| 4.01e-100 | FFCP PHASE2:Hg19::chr19:18283959..18283993,+#_1d17d1ff57920a9c460b5df388b0f5d7 | p@chr19:18283959..18283993, + |
| 4.94e-100 | FFCP PHASE1:Hg19::chr5:176326310..176326321,-#_011295c89591606b11a6ba0864db3be7 | p2@HK3 |
| 4.94e-100 | FFCP PHASE2:Hg19::chr5:176326310..176326321,-#_011295c89591606b11a6ba0864db3be7 | p2@HK3 |
| 5.73e-100 | FFCP PHASE1:Hg19::chr19:54726874..54726887,-#_e16ae2d5a590bb8b2e5c161d5de342e1 | p1@LILRB3 |
| 5.73e-100 | FFCP PHASE2:Hg19::chr19:54726874..54726887,-#_e16ae2d5a590bb8b2e5c161d5de342e1 | p1@LILRB3 |
| 8.49e-100 | FFCP PHASE2:Hg19::chr7:139586209..139586213,+#_19d8b9d594f315db52b5c6e6b5d417cd | p@chr7:139586209..139586213, + |
| 8.49e-100 | FFCP PHASE1:Hg19::chr7:139586209..139586213,+#_19d8b9d594f315db52b5c6e6b5d417cd | p@chr7:139586209..139586213, + |
| 3.73e-99 | FFCP PHASE2:Hg19::chr19:47823947..47823977,+#_f67823b743f1813bdf3599bc01671ef3 | p@chr19:47823947..47823977, + |
| 3.73e-99 | FFCP PHASE1:Hg19::chr19:47823947..47823977,+#_f67823b743f1813bdf3599bc01671ef3 | p@chr19:47823947..47823977, + |
| 5.25e-99 | FFCP PHASE2:Hg19::chr7:139529081..139529084,+#_f92fa878d6f4e2b969210ae8859b35eb | p6@TBXAS1 |
| 5.25e-99 | FFCP PHASE1:Hg19::chr7:139529081..139529084,+#_f92fa878d6f4e2b969210ae8859b35eb | p6@TBXAS1 |
| 1.2e-98 | FFCP PHASE2:Hg19::chr17:72542163..72542182,-#_3108392afbb07c7b3aaf65ddd574336e | p2@CD300C |
| 1.2e-98 | FFCP PHASE1:Hg19::chr17:72542163..72542182,-#_3108392afbb07c7b3aaf65ddd574336e | p2@CD300C |
| 1.58e-98 | FFCP PHASE1:Hg19::chr6:31555045..31555057,+#_e15571c3312d8e4a40ea043577fda2c3 | p9@LST1 |
| 1.58e-98 | FFCP PHASE2:Hg19::chr6:31555045..31555057,+#_e15571c3312d8e4a40ea043577fda2c3 | p9@LST1 |
| 2.87e-98 | FFCP PHASE2:Hg19::chr19:54823886..54823925,-#_95f6ac3c112978d41be8de0f9bdb802c | p2@LILRA5 |
| 2.87e-98 | FFCP PHASE1:Hg19::chr19:54823886..54823925,-#_95f6ac3c112978d41be8de0f9bdb802c | p2@LILRA5 |
| 3.15e-98 | FFCP PHASE1:Hg19::chr19:18287936..18287989,+#_efde6dbe1ecec2863ca49ae4482a0a33 | p@chr19:18287936..18287989, + |
| 3.15e-98 | FFCP PHASE2:Hg19::chr19:18287936..18287989,+#_efde6dbe1ecec2863ca49ae4482a0a33 | p@chr19:18287936..18287989, + |
| 3.31e-98 | FFCP PHASE1:Hg19::chr1:161188686..161188721,+#_31b2d264c04791ca10f8eaaa5c58a1b9 | p@chr1:161188686..161188721, + |
| 3.31e-98 | FFCP PHASE2:Hg19::chr1:161188686..161188721,+#_31b2d264c04791ca10f8eaaa5c58a1b9 | p@chr1:161188686..161188721, + |
| 4.2e-98 | FFCP PHASE1:Hg19::chr9:137808181..137808200,+#_42136d98de58551a89fab9dc207e7b5c | p@chr9:137808181..137808200, + |
| 4.2e-98 | FFCP PHASE2:Hg19::chr9:137808181..137808200,+#_42136d98de58551a89fab9dc207e7b5c | p@chr9:137808181..137808200, + |
| 9.37e-98 | FFCP PHASE2:Hg19::chr14:92927376..92927396,+#_c54165091c9f734466efe7fe554ff218 | p@chr14:92927376..92927396, + |
| 9.37e-98 | FFCP PHASE1:Hg19::chr14:92927376..92927396,+#_c54165091c9f734466efe7fe554ff218 | p@chr14:92927376..92927396, + |
| 1.89e-97 | FFCP PHASE2:Hg19::chr12:54778351..54778378,-#_d59410755bd32150a72bf255c04cc8ab | p6@ZNF385A |
| 1.89e-97 | FFCP PHASE1:Hg19::chr12:54778351..54778378,-#_d59410755bd32150a72bf255c04cc8ab | p6@ZNF385A |
| 2.05e-97 | FFCP PHASE2:Hg19::chrX:152086449..152086473,+#_c4962561258939fc88f6bb0a0add9fab | p4@ZNF185 |
| 2.05e-97 | FFCP PHASE1:Hg19::chrX:152086449..152086473,+#_c4962561258939fc88f6bb0a0add9fab | p4@ZNF185 |
| 1.42e-96 | FFCP PHASE2:Hg19::chr12:8276224..8276237,+#_0a24ee29dbe29c47e39ba5e47f9c67e2 | p3@CLEC4A |
| 1.42e-96 | FFCP PHASE1:Hg19::chr12:8276224..8276237,+#_0a24ee29dbe29c47e39ba5e47f9c67e2 | p3@CLEC4A |
| 2.06e-96 | FFCP PHASE2:Hg19::chr11:58977674..58977688,-#_aa0f337fbf76c3d4db3ae2faa17a5b71 | p1@AK024358 |
| 2.06e-96 | FFCP PHASE1:Hg19::chr11:58977674..58977688,-#_aa0f337fbf76c3d4db3ae2faa17a5b71 | p1@AK024358 |
| 2.51e-96 | FFCP PHASE2:Hg19::chr2:145429606..145429658,+#_7c5bfb08b8208ce09ff6ec4c7376c621 | p@chr2:145429606..145429658, + |
| 2.51e-96 | FFCP PHASE1:Hg19::chr2:145429606..145429658,+#_7c5bfb08b8208ce09ff6ec4c7376c621 | p@chr2:145429606..145429658, + |
| 2.72e-96 | FFCP PHASE2:Hg19::chr5:79442172..79442212,-#_40f809655bf998034fe2998de4494ca8 | p@chr5:79442172..79442212, - |
| 2.72e-96 | FFCP PHASE1:Hg19::chr5:79442172..79442212,-#_40f809655bf998034fe2998de4494ca8 | p@chr5:79442172..79442212, - |
| 4.76e-96 | FFCP PHASE1:Hg19::chr14:103587774..103587784,+#_a6e458289f0e9258a59a81020fa64658 | p@chr14:103587774..103587784, + |
| 4.76e-96 | FFCP PHASE2:Hg19::chr14:103587774..103587784,+#_a6e458289f0e9258a59a81020fa64658 | p@chr14:103587774..103587784, + |
| 6.11e-96 | FFCP PHASE1:Hg19::chr1:161039459..161039478,-#_c932ad0e15297f89d46917bc48ccd4d4 | p4@ARHGAP30 |
| 6.11e-96 | FFCP PHASE2:Hg19::chr1:161039459..161039478,-#_c932ad0e15297f89d46917bc48ccd4d4 | p4@ARHGAP30 |
| 6.16e-96 | FFCP PHASE1:Hg19::chr11:47380465..47380487,-#_97ac72a6384110743d936bcaf5239c41 | p@chr11:47380465..47380487, - |
| 6.16e-96 | FFCP PHASE2:Hg19::chr11:47380465..47380487,-#_97ac72a6384110743d936bcaf5239c41 | p@chr11:47380465..47380487, - |
| 6.29e-96 | FFCP PHASE1:Hg19::chr11:122735321..122735348,+#_cef91425c5137479601fefb34f74f7e8 | p1@CRTAM |
| 6.29e-96 | FFCP PHASE2:Hg19::chr11:122735321..122735348,+#_cef91425c5137479601fefb34f74f7e8 | p1@CRTAM |
| 6.59e-96 | FFCP PHASE2:Hg19::chrX:80458085..80458112,+#_70212151d2515ad45c3c8f38cc747cda | p7@SH3BGRL |
| 6.59e-96 | FFCP PHASE1:Hg19::chrX:80458085..80458112,+#_70212151d2515ad45c3c8f38cc747cda | p7@SH3BGRL |
| 7.11e-96 | FFCP PHASE1:Hg19::chr14:92927429..92927462,+#_7a398644455873c0f817629de8f00908 | p@chr14:92927429..92927462, + |
| 7.11e-96 | FFCP PHASE2:Hg19::chr14:92927429..92927462,+#_7a398644455873c0f817629de8f00908 | p@chr14:92927429..92927462, + |
| 7.98e-96 | FFCP PHASE2:Hg19::chr14:92927400..92927421,+#_00e000a9f8abe889314eaa4ab2b9c191 | p@chr14:92927400..92927421, + |
| 7.98e-96 | FFCP PHASE1:Hg19::chr14:92927400..92927421,+#_00e000a9f8abe889314eaa4ab2b9c191 | p@chr14:92927400..92927421, + |
| 8.84e-96 | FFCP PHASE1:Hg19::chr21:30672433..30672464,+#_2bc7b603141ea35dfe379deedff711f7 | p6@BACH1 |
| 8.84e-96 | FFCP PHASE2:Hg19::chr21:30672433..30672464,+#_2bc7b603141ea35dfe379deedff711f7 | p6@BACH1 |
| 1.08e-95 | FFCP PHASE2:Hg19::chr19:36395505..36395529,-#_611225d3664130b3a08adbf54c7be626 | p@chr19:36395505..36395529, - |
| 1.08e-95 | FFCP PHASE1:Hg19::chr19:36395505..36395529,-#_611225d3664130b3a08adbf54c7be626 | p@chr19:36395505..36395529, - |
| 1.29e-95 | FFCP PHASE1:Hg19::chr7:99987647..99987671,+#_1a0dd85b0469d50341dda9cc175801bc | p@chr7:99987647..99987671, + |
| 1.29e-95 | FFCP PHASE2:Hg19::chr7:99987647..99987671,+#_1a0dd85b0469d50341dda9cc175801bc | p@chr7:99987647..99987671, + |
| 1.5e-95 | FFCP PHASE1:Hg19::chr1:27961720..27961727,-#_a9c3d51d5ac2ea3a088b5098e1083a46 | p10@FGR |
| 1.5e-95 | FFCP PHASE2:Hg19::chr1:27961720..27961727,-#_a9c3d51d5ac2ea3a088b5098e1083a46 | p10@FGR |
| 2.71e-95 | FFCP PHASE2:Hg19::chr1:183556062..183556079,-#_05d8f1b9c96e904d4f84e3d3f9b0038a | p@chr1:183556062..183556079, - |
| 2.71e-95 | FFCP PHASE1:Hg19::chr1:183556062..183556079,-#_05d8f1b9c96e904d4f84e3d3f9b0038a | p@chr1:183556062..183556079, - |
| 3.52e-95 | FFCP PHASE2:Hg19::chr14:95651949..95651981,+#_93345f4772350bd071717c905bf4d7f1 | p@chr14:95651949..95651981, + |
| 3.52e-95 | FFCP PHASE1:Hg19::chr14:95651949..95651981,+#_93345f4772350bd071717c905bf4d7f1 | p@chr14:95651949..95651981, + |
| 4.01e-95 | FFCP PHASE2:Hg19::chr2:109204876..109204889,+#_688f75225c98cc0a1c4ab61be6d9a294 | p7@LIMS1 |
| 4.01e-95 | FFCP PHASE1:Hg19::chr2:109204876..109204889,+#_688f75225c98cc0a1c4ab61be6d9a294 | p7@LIMS1 |
| 4.48e-95 | FFCP PHASE2:Hg19::chr12:10279509..10279514,-#_da7798d23046f992aa6c713c6143f5d9 | p4@CLEC7A |
| 4.48e-95 | FFCP PHASE1:Hg19::chr12:10279509..10279514,-#_da7798d23046f992aa6c713c6143f5d9 | p4@CLEC7A |
| 6.92e-95 | FFCP PHASE1:Hg19::chr5:156534012..156534066,-#_825136fc96aaa15dbdcf9a91030249a4 | p10@HAVCR2 |
| 6.92e-95 | FFCP PHASE2:Hg19::chr5:156534012..156534066,-#_825136fc96aaa15dbdcf9a91030249a4 | p10@HAVCR2 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical system that consists of the blood and blood forming tissues.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
