FFCP PHASE1:Mm9::chr1:99992173..99992225,-: Difference between revisions
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{{FFCP|EntrezGene=18484|HGNC=|UniProt=P97467,F8VQA4,E9Q8R9,A1L331|association_with_transcript=0bp_to_ENSMUST00000058762,ENSMUST00000097625,ENSMUST00000163007,ENSMUST00000164496,NM_013626,uc007cfo.1,uc007cfp.1_5end|description=CAGE_peak_3_at_Pam_5end|id=chr1:99992173..99992225,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004535!4.87e-13!23;UBERON:0001009!4.87e-13!23;UBERON:0004111!1.01e-11!122;UBERON:0000025!6.80e-11!114;UBERON:0007100!3.50e-10!18;UBERON:0000948!3.50e-10!18;UBERON:0005498!3.50e-10!18;UBERON:0004140!3.50e-10!18;UBERON:0009881!3.50e-10!18;UBERON:0004141!3.50e-10!18;UBERON:0003084!3.50e-10!18;UBERON:0007005!3.50e-10!18;UBERON:0004139!3.50e-10!18;UBERON:0004291!3.50e-10!18;UBERON:0002616!9.88e-08!49;UBERON:0004121!1.10e-07!102;UBERON:0000924!1.10e-07!102;UBERON:0006601!1.10e-07!102;UBERON:0000955!1.12e-07!50;UBERON:0006238!1.12e-07!50;UBERON:0000033!1.38e-07!63;UBERON:0004872!1.39e-07!33;UBERON:0002791!4.95e-07!29;UBERON:0003528!4.95e-07!29;UBERON:0001893!4.95e-07!29;UBERON:0001017!5.92e-07!73;UBERON:0005743!5.92e-07!73;UBERON:0003080!7.68e-07!40|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.60e-13,92;UBERON:0004535,4.86e-13,23;UBERON:0001009,4.86e-13,23;UBERON:0004111,1.08e-11,122;UBERON:0000025,7.30e-11,114;UBERON:0007100,3.50e-10,18;UBERON:0000948,3.50e-10,18;UBERON:0005498,3.50e-10,18;UBERON:0004140,3.50e-10,18;UBERON:0009881,3.50e-10,18;UBERON:0004141,3.50e-10,18;UBERON:0003084,3.50e-10,18;UBERON:0007005,3.50e-10,18;UBERON:0004139,3.50e-10,18;UBERON:0004291,3.50e-10,18;UBERON:0004872,1.39e-07,33;UBERON:0004121,4.30e-07,95;UBERON:0000924,4.30e-07,95;UBERON:0006601,4.30e-07,95;UBERON:0003528,4.95e-07,29;UBERON:0002791,4.95e-07,29;UBERON:0001893,4.95e-07,29;UBERON:0000073,5.31e-07,54;UBERON:0001017,5.92e-07,73;UBERON:0003080,7.67e-07,40|phase1_expression=36.9943836812074,3.14077866875425,4.09499315450582,0.90739263392049,1.00179145989269,2.18243053485457,1.63528848416868,2.58246646883153,1.54867594366833,0.468129052643987,1.36974374580404,1.43589886191606,2.9104124088305,1.39872643870396,0.333109761815663,1.61980213911861,0,1.26184866143295,0.548457734422955,0,13.8620562946244,2.38298282882125,1.30599894569468,0.799962113967033,2.98232065387321,5.16808767703518,3.01533397311352,1.72376986148711,2.66032787238923,1.51218077855958,2.88249663851896,0,0,0,1.44425809875637,1.66234645358492,2.45003227514843,31.808403936005,10.1573594788094,13.088093599345,17.6469446409304,25.2726829434625,20.3914348273085,64.2073771675444,69.9500825414651,47.5386088098755,7.04152209913235,19.4042389178597,53.3837424044767,36.358391126891,19.0381533410493,24.4379359420452,0,1.45072428402269,3.02484419228218,14.9210472900849,25.5014761545493,34.5500301825886,11.5320382689971,9.52183762689659,10.1413024560989,9.82649143000483,8.00365316500025,11.6986963246582,5.93319817540185,12.0781619540837,11.085204089181,7.30014780110954,25.5076446278855,20.9259204414121,22.2944459032465,8.2838785477103,9.718215801871,18.0061474845982,15.7186572469908,16.5459381589804,45.1475112097494,29.1127130834228,28.2636021191488,11.8697658957174,8.5083508550241,12.5019208933622,30.4309468911505,38.2678574821542,38.8107549353098,12.0797720044204,10.9626194215309,10.2519695203915,6.20954785332109,13.2250230186875,22.0297011413275,6.88339101585109,0.679971333707751,1.07940638327563,0.649776417447669,0.448026887097336,7.3031098468511,22.8376632254597,15.5871602761721,18.0203183000274,11.1266301623578,38.4979432242953,17.8363667794652,28.4426681261332,8.87613268145978,7.85415582972806,9.0994400102661,6.96521666286266,8.2860122767095,29.688427812965,10.4091196059682,10.9607572192371,12.6838523490832,11.0027527603414,12.346814249249,25.2589848572648,8.89901883843746,22.1237016087465,11.4999371753484,19.4120219936891,15.0172232553068,8.727754556434,5.59175283654366,4.68449275218475,6.70229461803056,4.85368404896324,8.98613433794402,3.59941638596045,7.24300294316469,36.3991253753719,15.0975198930147,18.8481528169297,18.7730265807659,17.6443665557928,23.0644729461112,20.6046404096052,26.3763952372319,16.6705340617525,6.82351447770922,15.7831391914855,5.59517904739626,10.1156925950728,10.0834792690996,11.7549757911858,15.7164313039567,10.1209839025031,13.8678552348399,11.6416516832557,5.17363183038821,10.2117283290622,12.4925298156404,13.3709396780821,18.3511184488895,20.89512999133,19.7550850951626,11.3449532086541,3.51106593656617,2.57347907114715,7.38825098428541,30.0332370176478,22.2799756982041,30.6105504483725,31.2503050972478,35.6143259462801,40.1094493507183,35.345159602062,41.8506506183406,43.7870033876886,32.2537305830422,26.7592966448925,28.3740833410495,22.3685980760758,19.9790604914856,22.5466783517425,13.24826675954,18.9344486777883,4.62586296177317,4.7601101999438,11.9441420299731,13.4697269679054,11.7269389803105,12.1010114774006,14.4545728499166,15.2180500890047,9.49058123089023,13.9994111515409,18.598805451219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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18484 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P97467,uniprot:F8VQA4,uniprot:E9Q8R9,uniprot:A1L331 | |||
|association_with_transcript=0bp_to_ENSMUST00000058762,ENSMUST00000097625,ENSMUST00000163007,ENSMUST00000164496,NM_013626,uc007cfo.1,uc007cfp.1_5end | |||
|cluster_id=chr1:99992173..99992225,- | |||
|description=CAGE_peak_3_at_Pam_5end | |||
|id=chr1:99992173..99992225,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!4.87e-13!23;UBERON:0001009!4.87e-13!23;UBERON:0004111!1.01e-11!122;UBERON:0000025!6.80e-11!114;UBERON:0007100!3.50e-10!18;UBERON:0000948!3.50e-10!18;UBERON:0005498!3.50e-10!18;UBERON:0004140!3.50e-10!18;UBERON:0009881!3.50e-10!18;UBERON:0004141!3.50e-10!18;UBERON:0003084!3.50e-10!18;UBERON:0007005!3.50e-10!18;UBERON:0004139!3.50e-10!18;UBERON:0004291!3.50e-10!18;UBERON:0002616!9.88e-08!49;UBERON:0004121!1.10e-07!102;UBERON:0000924!1.10e-07!102;UBERON:0006601!1.10e-07!102;UBERON:0000955!1.12e-07!50;UBERON:0006238!1.12e-07!50;UBERON:0000033!1.38e-07!63;UBERON:0004872!1.39e-07!33;UBERON:0002791!4.95e-07!29;UBERON:0003528!4.95e-07!29;UBERON:0001893!4.95e-07!29;UBERON:0001017!5.92e-07!73;UBERON:0005743!5.92e-07!73;UBERON:0003080!7.68e-07!40 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.60e-13,92;UBERON:0004535,4.86e-13,23;UBERON:0001009,4.86e-13,23;UBERON:0004111,1.08e-11,122;UBERON:0000025,7.30e-11,114;UBERON:0007100,3.50e-10,18;UBERON:0000948,3.50e-10,18;UBERON:0005498,3.50e-10,18;UBERON:0004140,3.50e-10,18;UBERON:0009881,3.50e-10,18;UBERON:0004141,3.50e-10,18;UBERON:0003084,3.50e-10,18;UBERON:0007005,3.50e-10,18;UBERON:0004139,3.50e-10,18;UBERON:0004291,3.50e-10,18;UBERON:0004872,1.39e-07,33;UBERON:0004121,4.30e-07,95;UBERON:0000924,4.30e-07,95;UBERON:0006601,4.30e-07,95;UBERON:0003528,4.95e-07,29;UBERON:0002791,4.95e-07,29;UBERON:0001893,4.95e-07,29;UBERON:0000073,5.31e-07,54;UBERON:0001017,5.92e-07,73;UBERON:0003080,7.67e-07,40 | |||
|phase1_expression=36.9943836812074,3.14077866875425,4.09499315450582,0.90739263392049,1.00179145989269,2.18243053485457,1.63528848416868,2.58246646883153,1.54867594366833,0.468129052643987,1.36974374580404,1.43589886191606,2.9104124088305,1.39872643870396,0.333109761815663,1.61980213911861,0,1.26184866143295,0.548457734422955,0,13.8620562946244,2.38298282882125,1.30599894569468,0.799962113967033,2.98232065387321,5.16808767703518,3.01533397311352,1.72376986148711,2.66032787238923,1.51218077855958,2.88249663851896,0,0,0,1.44425809875637,1.66234645358492,2.45003227514843,31.808403936005,10.1573594788094,13.088093599345,17.6469446409304,25.2726829434625,20.3914348273085,64.2073771675444,69.9500825414651,47.5386088098755,7.04152209913235,19.4042389178597,53.3837424044767,36.358391126891,19.0381533410493,24.4379359420452,0,1.45072428402269,3.02484419228218,14.9210472900849,25.5014761545493,34.5500301825886,11.5320382689971,9.52183762689659,10.1413024560989,9.82649143000483,8.00365316500025,11.6986963246582,5.93319817540185,12.0781619540837,11.085204089181,7.30014780110954,25.5076446278855,20.9259204414121,22.2944459032465,8.2838785477103,9.718215801871,18.0061474845982,15.7186572469908,16.5459381589804,45.1475112097494,29.1127130834228,28.2636021191488,11.8697658957174,8.5083508550241,12.5019208933622,30.4309468911505,38.2678574821542,38.8107549353098,12.0797720044204,10.9626194215309,10.2519695203915,6.20954785332109,13.2250230186875,22.0297011413275,6.88339101585109,0.679971333707751,1.07940638327563,0.649776417447669,0.448026887097336,7.3031098468511,22.8376632254597,15.5871602761721,18.0203183000274,11.1266301623578,38.4979432242953,17.8363667794652,28.4426681261332,8.87613268145978,7.85415582972806,9.0994400102661,6.96521666286266,8.2860122767095,29.688427812965,10.4091196059682,10.9607572192371,12.6838523490832,11.0027527603414,12.346814249249,25.2589848572648,8.89901883843746,22.1237016087465,11.4999371753484,19.4120219936891,15.0172232553068,8.727754556434,5.59175283654366,4.68449275218475,6.70229461803056,4.85368404896324,8.98613433794402,3.59941638596045,7.24300294316469,36.3991253753719,15.0975198930147,18.8481528169297,18.7730265807659,17.6443665557928,23.0644729461112,20.6046404096052,26.3763952372319,16.6705340617525,6.82351447770922,15.7831391914855,5.59517904739626,10.1156925950728,10.0834792690996,11.7549757911858,15.7164313039567,10.1209839025031,13.8678552348399,11.6416516832557,5.17363183038821,10.2117283290622,12.4925298156404,13.3709396780821,18.3511184488895,20.89512999133,19.7550850951626,11.3449532086541,3.51106593656617,2.57347907114715,7.38825098428541,30.0332370176478,22.2799756982041,30.6105504483725,31.2503050972478,35.6143259462801,40.1094493507183,35.345159602062,41.8506506183406,43.7870033876886,32.2537305830422,26.7592966448925,28.3740833410495,22.3685980760758,19.9790604914856,22.5466783517425,13.24826675954,18.9344486777883,4.62586296177317,4.7601101999438,11.9441420299731,13.4697269679054,11.7269389803105,12.1010114774006,14.4545728499166,15.2180500890047,9.49058123089023,13.9994111515409,18.5988054512199,17.5081695396213,15.4021628824105,9.88701349519644,6.70027954611552,6.57166201739412,7.39704813717019,8.3401414205102,10.1436962105772,11.2008230314923,7.95205197387266,11.3620028222316,19.0974342115257,10.1851002105925,12.0889020437859,10.1185674415876,2.66807364378434,5.00535317148282,2.75182593158484,3.14806957338795,3.85434230638156,3.37648023653384,3.05551022137704,4.31544206176216,6.97181475132652,4.3929826110093,18.6898668485561,9.30352369171258,7.17686648163489,7.57736633841335,3.04975602987251,3.37710464954357,31.4080423283228,12.127450353311,11.2445833744998,14.5980773766662,11.7345124144251,15.0755631697634,16.1869675802489,18.5376965464909,25.2216230569906,27.9045508957456,45.4446090673838,29.9869865929801,27.1115421529456,27.3386720719057,9.04747703635634,6.52686820582452,3.44234991113325,14.9005843004556,20.7110261084252,17.2301179290539,20.1639982813311,10.856249869788,6.94118082715765,7.80877488593277,7.97066571611356,9.79772071605463,14.9275111635204,17.8338214396964,13.7635638569464,10.8134667427185,10.6727700045561,11.5675673911851,19.1619115031163,16.025904330053,33.3918266674831,17.9817434040064,0,4.12727081463468,6.95344181018927,6.22396763194464,5.31543407185391,7.99331384654211,12.9214146584111,10.5424781548477,11.4079161083111,10.4292130118819,10.5418608574999,8.25084345985495,41.5336319019621,7.38250485528372,5.30370603509293,7.50179622610573,9.57637261668277,10.167022603318,11.3538824215463,13.0919928119278,3.98941903708308,3.38931313382112,7.71849393192367,17.3130565588554,16.1464426695906,20.2048298509322,18.2639686324799,12.3105674808796,10.2018292820448,26.8866687915239,6.1513517087227,10.9385040020508,7.9633646768976,5.27431679613135,3.96413260390973,3.88922894451088,9.68877050964975,8.39708713941948,9.53579819250524,6.68269432610579,10.7554237817586,14.6390016331331,13.8246836251906,14.4270924249983,13.9752040797554,17.8020937227963,26.697066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| |||
|short_description=p3@Pam | |||
}} |
Revision as of 06:39, 6 August 2015
Short description: | p3@Pam |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Pam_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000058762, ENSMUST00000097625, ENSMUST00000163007, ENSMUST00000164496, NM_013626, uc007cfo.1, uc007cfp.1_5end |
EntrezGene: | 18484 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 2.60e-13 | 92 |
cardiovascular system | 4.86e-13 | 23 |
circulatory system | 4.86e-13 | 23 |
anatomical conduit | 1.08e-11 | 122 |
tube | 7.30e-11 | 114 |
primary circulatory organ | 3.50e-10 | 18 |
heart | 3.50e-10 | 18 |
primitive heart tube | 3.50e-10 | 18 |
primary heart field | 3.50e-10 | 18 |
anterior lateral plate mesoderm | 3.50e-10 | 18 |
heart tube | 3.50e-10 | 18 |
heart primordium | 3.50e-10 | 18 |
cardiac mesoderm | 3.50e-10 | 18 |
cardiogenic plate | 3.50e-10 | 18 |
heart rudiment | 3.50e-10 | 18 |
splanchnic layer of lateral plate mesoderm | 1.39e-07 | 33 |
ectoderm-derived structure | 4.30e-07 | 95 |
ectoderm | 4.30e-07 | 95 |
presumptive ectoderm | 4.30e-07 | 95 |
brain grey matter | 4.95e-07 | 29 |
regional part of telencephalon | 4.95e-07 | 29 |
telencephalon | 4.95e-07 | 29 |
regional part of nervous system | 5.31e-07 | 54 |
central nervous system | 5.92e-07 | 73 |
anterior neural tube | 7.67e-07 | 40 |