FFCP PHASE2:Hg19::chr4:54966328..54966335,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:170825 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:24959 |TSScl...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=170825 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=24959 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=D6R903 | ||
|association_with_transcript=-4bp_to_ENST00000503800_5end | |association_with_transcript=-4bp_to_ENST00000503800_5end | ||
|cluster_id=chr4:54966328..54966335,+ | |cluster_id=chr4:54966328..54966335,+ | ||
Latest revision as of 00:45, 18 September 2015
| Short description: | p1@GSX2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_GSX2_5end |
| Coexpression cluster: | C431_acute_leukemia_Mast_leiomyoblastoma_chronic_immature_CD34 |
| Association with transcript: | -4bp_to_ENST00000503800_5end |
| EntrezGene: | GSX2 |
| HGNC: | 24959 |
| UniProt: | D6R903 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@GSX2 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| retinal pigment epithelial cell | 5.65e-32 | 3 |
| visual pigment cell | 3.63e-24 | 4 |
| neuronal stem cell | 4.61e-21 | 8 |
| neuron | 4.16e-16 | 6 |
| neuroblast | 4.16e-16 | 6 |
| electrically signaling cell | 4.16e-16 | 6 |
| astrocyte of the cerebral cortex | 4.28e-15 | 3 |
| neural cell | 1.40e-13 | 25 |
| pigment cell | 2.62e-07 | 14 |
| oligodendrocyte | 5.67e-07 | 7 |
Showing 1 to 10 of 13 entries
| Ontology term | p-value | n |
|---|---|---|
| pigmented layer of retina | 5.65e-32 | 3 |
| presumptive retinal pigmented epithelium | 5.65e-32 | 3 |
| retina | 2.34e-28 | 6 |
| photoreceptor array | 2.34e-28 | 6 |
| posterior segment of eyeball | 2.34e-28 | 6 |
| layer of retina | 3.63e-24 | 4 |
| eye | 1.57e-12 | 21 |
| visual system | 1.57e-12 | 21 |
| pre-chordal neural plate | 1.61e-12 | 61 |
| central nervous system | 3.79e-11 | 81 |
Showing 1 to 10 of 36 entries
