FFCP PHASE2:Hg19::chrX:135570151..135570192,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:680 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:1113 |TSSclassi...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=680 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=1113 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=P32247 | ||
|association_with_transcript=26bp_to_NM_001727,uc004ezv.1_5end | |association_with_transcript=26bp_to_NM_001727,uc004ezv.1_5end | ||
|cluster_id=chrX:135570151..135570192,+ | |cluster_id=chrX:135570151..135570192,+ | ||
Latest revision as of 14:38, 19 September 2015
| Short description: | p2@BRS3 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_BRS3_5end |
| Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
| Association with transcript: | 26bp_to_NM_001727, uc004ezv.1_5end |
| EntrezGene: | BRS3 |
| HGNC: | 1113 |
| UniProt: | P32247 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@BRS3 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| chondroblast | 7.67e-18 | 6 |
| chondrocyte | 7.67e-18 | 6 |
| GAG secreting cell | 2.19e-12 | 9 |
| carbohydrate secreting cell | 2.19e-12 | 9 |
| extracellular matrix secreting cell | 5.55e-08 | 15 |
Showing 1 to 5 of 5 entries
| Ontology term | p-value | n |
|---|---|---|
| epididymis | 2.55e-98 | 1 |
| cartilage tissue | 4.27e-34 | 3 |
| skeletal tissue | 4.27e-34 | 3 |
| male genital duct | 5.96e-34 | 3 |
| internal male genitalia | 5.96e-34 | 3 |
| duct of male reproductive system | 7.14e-26 | 4 |
| mesonephric epithelium | 1.07e-13 | 8 |
| mesonephric tubule | 1.07e-13 | 8 |
| nephric duct | 1.07e-13 | 8 |
| renal duct | 1.07e-13 | 8 |
Showing 1 to 10 of 23 entries
| Ontology term | p-value | n |
|---|---|---|
| chondrosarcoma | 9.37e-99 | 1 |
| extraosseous chondrosarcoma | 9.37e-99 | 1 |
| myxoid chondrosarcoma | 9.37e-99 | 1 |
| extraskeletal myxoid chondrosarcoma | 9.37e-99 | 1 |
| connective tissue cancer | 7.67e-18 | 6 |
| musculoskeletal system cancer | 7.67e-18 | 6 |
Showing 1 to 6 of 6 entries
