FF:10080-102A8: Difference between revisions

Latest revision as of 12:20, 3 June 2020

Name:	breast, adult, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11792
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	breast
dev stage	77 years old adult
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	808002
catalog number	Cat:AM6952
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005429

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11792		CAGE		DRX008628		DRR009500

Accession ID Hg19

Library id		BAM		CTSS
CNhs11792		DRZ000925		DRZ002310

Accession ID Hg38

Library id		BAM		CTSS
CNhs11792		DRZ012275		DRZ013660

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0308
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.35
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.502
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.237
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0243
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0555
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0969
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.108
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.00358
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.502
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.389
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.092
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.342
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.269
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.466
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.237
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.514
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.389
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.237
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0.237
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.239
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11792

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0339
MA0003.1	MA0003.1	0.508
MA0004.1	MA0004.1	0.742
MA0006.1	MA0006.1	0.39
MA0007.1	MA0007.1	0.78
MA0009.1	MA0009.1	0.03
MA0014.1	MA0014.1	0.871
MA0017.1	MA0017.1	0.725
MA0018.2	MA0018.2	0.329
MA0019.1	MA0019.1	0.0252
MA0024.1	MA0024.1	0.023
MA0025.1	MA0025.1	0.921
MA0027.1	MA0027.1	0.606
MA0028.1	MA0028.1	1.49288e-5
MA0029.1	MA0029.1	0.99
MA0030.1	MA0030.1	7.15115e-4
MA0031.1	MA0031.1	0.00439
MA0035.2	MA0035.2	0.693
MA0038.1	MA0038.1	0.801
MA0039.2	MA0039.2	0.368
MA0040.1	MA0040.1	0.623
MA0041.1	MA0041.1	0.152
MA0042.1	MA0042.1	0.22
MA0043.1	MA0043.1	0.971
MA0046.1	MA0046.1	0.344
MA0047.2	MA0047.2	0.0149
MA0048.1	MA0048.1	0.138
MA0050.1	MA0050.1	0.751
MA0051.1	MA0051.1	0.713
MA0052.1	MA0052.1	0.00128
MA0055.1	MA0055.1	0.0142
MA0057.1	MA0057.1	0.813
MA0058.1	MA0058.1	0.594
MA0059.1	MA0059.1	0.0412
MA0060.1	MA0060.1	0.459
MA0061.1	MA0061.1	0.00725
MA0062.2	MA0062.2	4.77824e-8
MA0065.2	MA0065.2	0.453
MA0066.1	MA0066.1	0.172
MA0067.1	MA0067.1	0.505
MA0068.1	MA0068.1	5.12863e-5
MA0069.1	MA0069.1	0.543
MA0070.1	MA0070.1	0.744
MA0071.1	MA0071.1	0.501
MA0072.1	MA0072.1	0.487
MA0073.1	MA0073.1	0.979
MA0074.1	MA0074.1	0.502
MA0076.1	MA0076.1	6.88335e-8
MA0077.1	MA0077.1	0.337
MA0078.1	MA0078.1	0.32
MA0079.2	MA0079.2	0.218
MA0080.2	MA0080.2	0.819
MA0081.1	MA0081.1	0.37
MA0083.1	MA0083.1	0.00639
MA0084.1	MA0084.1	0.976
MA0087.1	MA0087.1	0.445
MA0088.1	MA0088.1	0.014
MA0090.1	MA0090.1	0.0605
MA0091.1	MA0091.1	0.689
MA0092.1	MA0092.1	0.797
MA0093.1	MA0093.1	0.747
MA0099.2	MA0099.2	1.67331e-6
MA0100.1	MA0100.1	0.109
MA0101.1	MA0101.1	0.167
MA0102.2	MA0102.2	0.0192
MA0103.1	MA0103.1	0.227
MA0104.2	MA0104.2	0.0235
MA0105.1	MA0105.1	8.87908e-7
MA0106.1	MA0106.1	0.0977
MA0107.1	MA0107.1	0.345
MA0108.2	MA0108.2	8.30402e-18
MA0111.1	MA0111.1	0.546
MA0112.2	MA0112.2	0.0678
MA0113.1	MA0113.1	0.491
MA0114.1	MA0114.1	0.912
MA0115.1	MA0115.1	0.877
MA0116.1	MA0116.1	1.95757e-4
MA0117.1	MA0117.1	0.238
MA0119.1	MA0119.1	0.484
MA0122.1	MA0122.1	0.435
MA0124.1	MA0124.1	0.88
MA0125.1	MA0125.1	0.904
MA0131.1	MA0131.1	0.195
MA0135.1	MA0135.1	0.0528
MA0136.1	MA0136.1	0.0394
MA0137.2	MA0137.2	3.45748e-6
MA0138.2	MA0138.2	0.745
MA0139.1	MA0139.1	0.0272
MA0140.1	MA0140.1	0.392
MA0141.1	MA0141.1	0.0951
MA0142.1	MA0142.1	0.847
MA0143.1	MA0143.1	0.447
MA0144.1	MA0144.1	0.0109
MA0145.1	MA0145.1	0.455
MA0146.1	MA0146.1	0.441
MA0147.1	MA0147.1	0.01
MA0148.1	MA0148.1	0.0369
MA0149.1	MA0149.1	0.148
MA0150.1	MA0150.1	0.0217
MA0152.1	MA0152.1	0.216
MA0153.1	MA0153.1	0.0866
MA0154.1	MA0154.1	0.0994
MA0155.1	MA0155.1	0.642
MA0156.1	MA0156.1	0.0124
MA0157.1	MA0157.1	0.0963
MA0159.1	MA0159.1	0.258
MA0160.1	MA0160.1	0.447
MA0162.1	MA0162.1	0.796
MA0163.1	MA0163.1	3.28526e-10
MA0164.1	MA0164.1	0.528
MA0258.1	MA0258.1	0.0461
MA0259.1	MA0259.1	0.114

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11792

Novel motif	Logo	P-value
1	1	0.012
10	10	0.0449
100	100	0.244
101	101	0.373
102	102	0.456
103	103	0.154
104	104	0.615
105	105	0.745
106	106	0.694
107	107	0.319
108	108	0.941
109	109	0.0715
11	11	0.1
110	110	0.0971
111	111	0.0313
112	112	0.751
113	113	0.35
114	114	0.00368
115	115	0.0676
116	116	0.593
117	117	0.0069
118	118	0.076
119	119	0.829
12	12	0.673
120	120	0.189
121	121	0.741
122	122	0.832
123	123	0.0081
124	124	0.24
125	125	0.251
126	126	0.475
127	127	0.924
128	128	0.868
129	129	0.378
13	13	0.0625
130	130	0.812
131	131	0.593
132	132	0.0743
133	133	0.643
134	134	0.882
135	135	0.192
136	136	0.742
137	137	0.715
138	138	0.232
139	139	0.563
14	14	0.649
140	140	0.0571
141	141	0.447
142	142	0.304
143	143	0.00247
144	144	0.815
145	145	0.663
146	146	0.984
147	147	0.333
148	148	0.275
149	149	0.46
15	15	0.0587
150	150	0.565
151	151	0.789
152	152	0.167
153	153	0.733
154	154	0.24
155	155	0.99
156	156	0.737
157	157	0.342
158	158	0.253
159	159	0.734
16	16	0.11
160	160	0.863
161	161	0.354
162	162	0.49
163	163	0.779
164	164	0.0584
165	165	0.66
166	166	0.967
167	167	0.027
168	168	0.734
169	169	0.605
17	17	0.506
18	18	0.0878
19	19	0.774
2	2	0.29
20	20	0.197
21	21	0.445
22	22	0.699
23	23	0.202
24	24	0.391
25	25	0.321
26	26	0.116
27	27	0.659
28	28	0.526
29	29	0.0128
3	3	0.0708
30	30	0.0314
31	31	0.917
32	32	0.307
33	33	0.3
34	34	0.27
35	35	0.0448
36	36	0.041
37	37	0.173
38	38	0.824
39	39	0.29
4	4	0.343
40	40	0.157
41	41	0.452
42	42	0.112
43	43	0.262
44	44	0.549
45	45	0.237
46	46	0.0799
47	47	0.0286
48	48	0.114
49	49	0.0765
5	5	0.807
50	50	0.741
51	51	0.513
52	52	0.194
53	53	0.665
54	54	0.992
55	55	0.633
56	56	0.707
57	57	0.103
58	58	0.514
59	59	0.759
6	6	0.978
60	60	0.595
61	61	0.214
62	62	0.362
63	63	0.601
64	64	0.258
65	65	0.913
66	66	0.0953
67	67	0.691
68	68	0.334
69	69	0.438
7	7	0.405
70	70	0.00571
71	71	0.0182
72	72	0.938
73	73	0.583
74	74	0.781
75	75	0.0259
76	76	0.0358
77	77	0.247
78	78	0.31
79	79	0.884
8	8	0.418
80	80	0.326
81	81	0.337
82	82	0.301
83	83	0.496
84	84	0.67
85	85	0.467
86	86	0.758
87	87	0.374
88	88	0.693
89	89	0.222
9	9	0.306
90	90	0.0334
91	91	0.488
92	92	0.625
93	93	0.0165
94	94	0.077
95	95	0.0865
96	96	0.42
97	97	0.622
98	98	0.048
99	99	0.414

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11792

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010080 human breast - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000310 (breast)
0002100 (trunk)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010080 (human breast - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000955,UBERON:0000310,UBERON:0006122,UBERON:0002100,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000467,UBERON:0002616,UBERON:0001062,UBERON:0000119,UBERON:0009569,UBERON:0005291,UBERON:0002950,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0001443,UBERON:0005743,UBERON:0002298,UBERON:0000915,UBERON:0001891,UBERON:0003075,UBERON:0003056,UBERON:0001049,UBERON:0006238,UBERON:0006601,UBERON:0005068,UBERON:0006241,UBERON:0003080,UBERON:0009616,UBERON:0007284,UBERON:0007135
+|DRA_sample_Accession=CAGE@SAMD00005429
+|accession_numbers=CAGE;DRX008628;DRR009500;DRZ000925;DRZ002310;DRZ012275;DRZ013660
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000310,UBERON:0002100,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010080
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!1.96!117.45!SOX18;;chr8:55370487..55370503,+!p1@SOX17!1.86!71.05!SOX17;;chr6:34524093..34524135,-!p1@SPDEF!1.82!65.25!SPDEF;;chr1:201979743..201979762,+!p1@ELF3!1.79!60.17!ELF3;;chr19:33793430..33793447,-!p1@CEBPA!1.75!220.40!CEBPA;;chr21:39870339..39870443,-!p1@ERG!1.74!53.65!ERG;;chr11:113930425..113930471,+!p1@ZBTB16!1.73!73.95!ZBTB16;;chr3:12330560..12330579,+!p1@PPARG!1.72!59.45!PPARG;;chr11:34642612..34642646,+!p1@EHF!1.72!51.47!EHF;;chr2:19558373..19558392,-!p1@OSR1!1.70!129.77!OSR1;;chr1:201979703..201979721,+!p2@ELF3!1.70!48.57!ELF3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.70!48.57!ZBED1;;chr19:46801639..46801699,+!p1@HIF3A!1.69!47.85!HIF3A;;chr3:12329397..12329433,+!p2@PPARG!1.62!90.62!PPARG;;chr16:79634595..79634620,-!p2@MAF!1.61!71.05!MAF;;chr15:96873984..96873999,+!p3@NR2F2!1.60!272.60!NR2F2;;chr5:2751762..2751784,-!p1@IRX2!1.52!31.90!IRX2;;chr3:12329358..12329393,+!p3@PPARG!1.49!72.50!PPARG;;chr11:47400078..47400106,-!p1@SPI1!1.49!29.72!SPI1;;chr10:131762504..131762555,-!p1@EBF3!1.47!28.27!EBF3;;chr7:44143925..44143970,+!p1@AEBP1!1.46!598.85!AEBP1;;chrX:106960285..106960299,-!p1@TSC22D3!1.45!697.45!TSC22D3;;chr3:187463179..187463201,-!p2@BCL6!1.45!109.47!BCL6;;chr7:19157248..19157268,-!p1@TWIST1!1.44!72.50!TWIST1;;chr6:152128810..152128827,+!p2@ESR1!1.44!26.82!ESR1;;chr14:38064429..38064486,-!p1@FOXA1!1.43!26.10!FOXA1;;chr7:73038839..73038862,-!p1@MLXIPL!1.42!25.37!MLXIPL;;chr2:177001290..177001315,+!p1@HOXD3!1.41!24.65!HOXD3;;chr8:106330656..106330684,+!p1@ZFPM2!1.39!60.90!ZFPM2;;chr5:3595934..3595957,+!p2@IRX1!1.38!23.20!IRX1;;chr16:85932760..85932775,+!p1@IRF8!1.38!23.20!IRF8;;chr22:38380543..38380569,-!p1@SOX10!1.37!22.47!SOX10;;chr17:1959369..1959388,+!p2@HIC1!1.36!56.55!HIC1;;chr7:15726243..15726293,-!p2@MEOX2!1.36!21.75!MEOX2;;chr3:126076242..126076257,-!p1@KLF15!1.34!26.10!KLF15;;chr16:79634624..79634642,-!p1@MAF!1.32!76.12!MAF;;chr20:55204351..55204377,+!p1@TFAP2C!1.32!25.37!TFAP2C;;chr15:42749722..42749739,-!p2@ZFP106!1.31!34.80!ZFP106;;chr1:170632285..170632309,+!p1@PRRX1!1.31!21.75!PRRX1;;chr7:15726296..15726315,-!p1@MEOX2!1.31!19.57!MEOX2;;chr13:72441315..72441454,-!p1@DACH1!1.30!37.70!DACH1;;chr11:113930291..113930339,+!p2@ZBTB16!1.30!30.45!ZBTB16;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.30!18.85!HOXC5;;chr17:38256822..38256851,-!p1@NR1D1!1.28!137.75!NR1D1;;chr6:10412600..10412637,-!p1@TFAP2A!1.28!29.72!TFAP2A;;chr5:3595961..3595975,+!p3@IRX1!1.28!18.12!IRX1;;chr8:25902876..25902936,-!p1@EBF2!1.28!18.12!EBF2;;chr10:8096631..8096660,+!p1@GATA3!1.27!21.02!GATA3;;chr7:44143978..44143989,+!p2@AEBP1!1.26!31.17!AEBP1;;chr7:44143997..44144008,+!p3@AEBP1!1.26!21.75!AEBP1;;chr11:113930401..113930422,+!p3@ZBTB16!1.26!17.40!ZBTB16;;chr12:52437488..52437507,+!p2@NR4A1!1.26!17.40!NR4A1;;chr1:40105299..40105326,-!p1@HEYL!1.26!17.40!HEYL;;chr16:54320646..54320672,-!p2@IRX3!1.25!25.37!IRX3;;chr8:72756637..72756664,-!p3@MSC!1.25!18.85!MSC;;chr5:158527104..158527135,-!p4@EBF1!1.25!16.67!EBF1;;chr3:12392932..12392962,+!p8@PPARG!1.25!16.67!PPARG;;chr2:46524537..46524553,+!p1@EPAS1!1.23!1551.50!EPAS1;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.87!EBF1;;chr5:2751785..2751808,-!p2@IRX2!1.23!15.95!IRX2;;chr5:71803177..71803255,-!p1@ZNF366!1.23!15.95!ZNF366;;chr3:69788576..69788648,+!p1@MITF!1.22!82.65!MITF;;chr1:214161272..214161322,+!p1@PROX1!1.22!21.75!PROX1;;chr8:72756667..72756736,-!p2@MSC!1.21!23.92!MSC;;chr8:102504651..102504683,+!p1@GRHL2!1.21!15.22!GRHL2;;chr8:10588010..10588030,-!p1@SOX7!1.21!15.22!SOX7;;chr9:124991204..124991246,-!p1@LHX6!1.21!15.22!LHX6;;chr16:54320617..54320643,-!p3@IRX3!1.20!18.85!IRX3;;chr18:53068911..53068935,-!p4@TCF4!1.20!16.67!TCF4;;chr1:61548225..61548299,+!p1@NFIA!1.19!187.77!NFIA;;chr15:96874012..96874042,+!p2@NR2F2!1.19!128.32!NR2F2;;chr10:8096772..8096787,+!p2@GATA3!1.18!16.67!GATA3;;chr2:176981499..176981522,+!p2@HOXD10!1.17!13.77!HOXD10;;chr16:54320675..54320715,-!p1@IRX3!1.16!29.00!IRX3;;chr13:41240717..41240735,-!p2@FOXO1!1.15!89.17!FOXO1;;chr9:94186085..94186096,-!p3@NFIL3!1.15!21.75!NFIL3;;chr3:126076264..126076305,-!p2@KLF15!1.15!18.12!KLF15;;chr7:27192185..27192209,-!p1@HOXA3!1.15!13.05!HOXA3;;chr16:79634464..79634493,-!p5@MAF!1.15!13.05!MAF;;chr20:50159198..50159299,-!p1@NFATC2!1.14!18.85!NFATC2;;chr8:48650715..48650735,-!p1@CEBPD!1.13!1574.70!CEBPD;;chr20:39317868..39317884,-!p1@MAFB!1.12!144.27!MAFB;;chr2:145275162..145275202,-!p2@ZEB2!1.12!71.77!ZEB2;;chr10:8095593..8095625,+!p3@GATA3!1.12!14.50!GATA3;;chr3:24536253..24536328,-!p1@THRB!1.11!22.47!THRB;;chrX:107019163..107019179,-!p7@TSC22D3!1.11!13.77!TSC22D3;;chr17:38256799..38256815,-!p3@NR1D1!1.10!21.02!NR1D1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.10!11.60!PEG3;;chr7:115670804..115670825,-!p1@TFEC!1.10!11.60!TFEC;;chr9:94186101..94186122,-!p1@NFIL3!1.09!157.32!NFIL3;;chr13:41240737..41240787,-!p1@FOXO1!1.08!132.67!FOXO1;;chr9:137218341..137218361,+!p2@RXRA!1.08!45.67!RXRA;;chr22:29196433..29196445,-!p4@XBP1!1.08!12.32!XBP1;;chr17:46675420..46675465,-!p3@HOXB6!1.07!12.32!HOXB6;;chr17:6926362..6926377,+!p1@BCL6B!1.07!10.87!BCL6B;;chr2:68592406..68592424,+!p1@PLEK!1.07!10.87!PLEK;;chr10:45495946..45495976,+!p2@ZNF22!1.07!10.87!ZNF22;;chr1:61548069..61548102,+!p3@NFIA!1.06!25.37!NFIA;;chr20:51588873..51588953,+!p1@TSHZ2!1.06!13.77!TSHZ2;;chr22:29196547..29196563,-!p2@XBP1!1.05!377.00!XBP1;;chr10:63809013..63809041,+!p3@ARID5B!1.05!58.00!ARID5B;;chr8:116681409..116681431,-!p2@TRPS1!1.05!28.27!TRPS1;;chr12:10875658..10875708,-!p2@CSDA!1.05!23.92!CSDA;;chr7:64126535..64126559,+!p2@ZNF107!1.05!21.75!ZNF107;;chr6:50786591..50786614,+!p1@TFAP2B!1.05!10.15!TFAP2B;;chr11:47400062..47400077,-!p2@SPI1!1.05!10.15!SPI1;;chr20:30433396..30433414,-!p1@FOXS1!1.05!10.15!FOXS1;;chr7:19157043..19157088,-!p2@TWIST1!1.04!25.37!TWIST1;;chr12:115122005..115122016,-!p3@TBX3!1.03!11.60!TBX3;;chr11:47279504..47279563,+!p1@NR1H3!1.02!21.75!NR1H3;;chr2:145277882..145277967,-!p3@ZEB2!1.02!16.67!ZEB2;;chr2:85980919..85980942,+!p4@ATOH8!1.02!10.15!ATOH8;;chr4:174451370..174451387,-!p1@HAND2!1.02!9.42!HAND2;;chr8:93115274..93115323,-!p4@RUNX1T1!1.02!9.42!RUNX1T1;;chr13:72441074..72441172,-!p2@DACH1!1.02!9.42!DACH1;;chr8:106330696..106330719,+!p2@ZFPM2!1.00!11.60!ZFPM2;;chr7:113726357..113726443,+!p1@FOXP2!0.99!15.22!FOXP2;;chr17:53342311..53342400,+!p1@HLF!0.99!10.15!HLF;;chr6:108977520..108977534,+!p7@FOXO3!0.99!8.70!FOXO3;;chr9:14314131..14314147,-!p2@NFIB!0.98!48.57!NFIB;;chr9:94186131..94186174,-!p2@NFIL3!0.97!70.32!NFIL3;;chr22:38597987..38598021,+!p2@MAFF!0.97!52.20!MAFF;;chr17:46621937..46621966,-!p2@HOXB2!0.96!22.47!HOXB2;;chr2:145282041..145282092,-!p8@ZEB2!0.96!12.32!ZEB2;;chr7:150946015..150946070,-!p3@SMARCD3!0.95!17.40!SMARCD3;;chr16:54320158..54320200,-!p5@IRX3!0.95!11.60!IRX3;;chrX:66763856..66763896,+!p1@AR!0.95!11.60!AR;;chr16:79634581..79634592,-!p4@MAF!0.95!7.97!MAF;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.95!7.97!ZNF676;;chr1:151804244..151804310,-!p1@RORC!0.95!7.97!RORC;;chr7:27205136..27205164,-!p1@HOXA9!0.95!7.97!HOXA9;;chr3:12392991..12393030,+!p7@PPARG!0.95!7.97!PPARG;;chr12:54394309..54394336,+!p2@HOXC9!0.95!7.97!HOXC9;;chr5:88178983..88179012,-!p1@MEF2C!0.94!62.35!MEF2C;;chr16:79633894..79633954,-!p3@MAF!0.94!15.22!MAF;;chr2:43453734..43453751,-!p1@ZFP36L2!0.93!826.50!ZFP36L2;;chr14:89883509..89883587,-!p2@FOXN3!0.93!52.92!FOXN3;;chr6:85474299..85474324,-!p1@TBX18!0.93!13.77!TBX18;;chr5:88179195..88179224,-!p3@MEF2C!0.93!12.32!MEF2C;;chr1:170633262..170633285,+!p3@PRRX1!0.93!8.70!PRRX1;;chr6:152126830..152126847,+!p4@ESR1!0.92!7.25!ESR1;;chr7:27170359..27170381,-!p1@HOXA4!0.92!7.25!HOXA4;;chr7:63505799..63505904,+!p1@ZNF727!0.92!7.25!ZNF727;;chrX:107018836..107018862,-!p8@TSC22D3!0.92!7.25!TSC22D3;;chr2:122042770..122042785,-!p1@TFCP2L1!0.92!7.25!TFCP2L1;;chr3:114343039..114343085,-!p8@ZBTB20!0.92!7.25!ZBTB20;;chr11:100999775..100999800,-!p2@PGR!0.92!7.25!PGR;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.92!7.25!HOXC5;;chr10:114709999..114710031,+!p1@TCF7L2!0.91!177.62!TCF7L2;;chr9:137218362..137218385,+!p4@RXRA!0.91!19.57!RXRA;;chrX:56258844..56258882,+!p1@KLF8!0.91!10.15!KLF8;;chr14:21566731..21566836,-!p1@ZNF219!0.90!78.30!ZNF219;;chr12:115121962..115121987,-!p1@TBX3!0.90!60.90!TBX3;;chr3:128206762..128206781,-!p2@GATA2!0.90!45.67!GATA2;;chr2:239756671..239756732,+!p1@TWIST2!0.90!23.20!TWIST2;;chr8:99956662..99956684,+!p1@OSR2!0.90!10.87!OSR2;;chr16:54320101..54320125,-!p4@IRX3!0.90!10.15!IRX3;;chr14:35873101..35873119,-!p6@NFKBIA!0.90!9.42!NFKBIA;;chr15:96873921..96873946,+!p1@NR2F2!0.89!200.10!NR2F2;;chr9:73028814..73028895,-!p1@KLF9!0.89!71.05!KLF9;;chr1:61548374..61548415,+!p4@NFIA!0.89!13.05!NFIA;;chr17:46687959..46688007,-!p2@HOXB7!0.89!9.42!HOXB7;;chr12:24715376..24715432,-!p1@SOX5!0.89!8.70!SOX5;;chr10:31607702..31607755,+!p3@ZEB1!0.89!7.97!ZEB1;;chr11:128457446..128457461,-!p4@ETS1!0.88!6.52!ETS1;;chr11:129245526..129245553,+!p1@BARX2!0.88!6.52!BARX2;;chr6:152128782..152128803,+!p5@ESR1!0.88!6.52!ESR1;;chr6:391743..391759,+!p1@IRF4!0.88!6.52!IRF4;;chr7:15725757..15725828,-!p5@MEOX2!0.88!6.52!MEOX2;;chr22:19748231..19748317,+!p1@TBX1!0.88!6.52!TBX1;;chr2:176987441..176987454,+!p1@HOXD9!0.88!6.52!HOXD9;;chr2:176994408..176994492,+!p1@HOXD8!0.88!6.52!HOXD8;;chr4:174450089..174450153,-!p2@HAND2!0.88!6.52!HAND2;;chr4:26165074..26165110,+!p9@RBPJ!0.88!6.52!RBPJ;;chr16:55358109..55358122,+!p1@IRX6!0.88!6.52!IRX6;;chr18:53089538..53089578,-!p14@TCF4!0.88!6.52!TCF4;;chr19:16435705..16435726,+!p3@KLF2!0.88!6.52!KLF2;;chr19:54041669..54041697,+!p2@ZNF331!0.88!6.52!ZNF331;;chr1:2461692..2461710,-!p1@HES5!0.88!6.52!HES5;;chr21:36260980..36261011,-!p1@RUNX1!0.87!193.57!RUNX1;;chr16:54964740..54964789,+!p1@IRX5!0.87!9.42!IRX5;;chr19:16435625..16435682,+!p1@KLF2!0.86!214.60!KLF2;;chr9:137218281..137218340,+!p1@RXRA!0.86!189.22!RXRA;;chr6:108882109..108882173,+!p2@FOXO3!0.86!35.52!FOXO3;;chr17:38256877..38256900,-!p2@NR1D1!0.86!21.02!NR1D1;;chr12:52430894..52430952,+!p3@NR4A1!0.86!12.32!NR4A1;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000310
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/breast%252c%2520adult%252c%2520donor1.CNhs11792.10080-102A8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/breast%252c%2520adult%252c%2520donor1.CNhs11792.10080-102A8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/breast%252c%2520adult%252c%2520donor1.CNhs11792.10080-102A8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/breast%252c%2520adult%252c%2520donor1.CNhs11792.10080-102A8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/breast%252c%2520adult%252c%2520donor1.CNhs11792.10080-102A8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10080-102A8
-|is_a=EFO:0002091;;FF:0000004;;FF:0000210;;FF:0010080
+|is_a=EFO:0002091;;FF:0010080
+|is_obsolete=
+|library_id=CNhs11792
+|library_id_phase_based=2:CNhs11792
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10080
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10080
 |name=breast, adult, donor1
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11792,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=102
 |rna_catalog_number=Cat:AM6952
@@ Line 57: / Line 78: @@
 |rna_weight_ug=50
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 77: / Line 99: @@
 |sample_tissue=breast
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10080-102A8;search_select_hide=table117:FF:10080-102A8
 }}

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FF:10080-102A8: Difference between revisions

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Latest revision as of 12:20, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0