FFCP PHASE1:Hg19::chr1:183206616..183206643,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:183206616..183206643,- | |||
|coexpression_cluster_id=C268 | |||
|description=CAGE_peak_at_chr1:183206616..183206643,- | |description=CAGE_peak_at_chr1:183206616..183206643,- | ||
|id=chr1:183206616..183206643,- | |id=chr1:183206616..183206643,- | ||
|ontology_enrichment_celltype=CL:0000066!1.24e-40!254;CL:0002076!9.91e-28!43;CL:0000223!2.12e-17!59;CL:0002368!1.31e-16!13;CL:0000076!1.05e-15!62;CL:0000220!4.11e-13!246;CL:0002321!7.51e-13!248;CL:0002202!6.84e-11!9;CL:0002632!6.84e-11!9;CL:0002251!3.49e-10!21;CL:0002159!1.79e-09!13;CL:0002077!2.89e-08!33;CL:0000244!7.49e-08!4;CL:0000731!7.49e-08!4;CL:0000063!5.80e-07!578 | |ontology_enrichment_celltype=CL:0000066!1.24e-40!254;CL:0002076!9.91e-28!43;CL:0000223!2.12e-17!59;CL:0002368!1.31e-16!13;CL:0000076!1.05e-15!62;CL:0000220!4.11e-13!246;CL:0002321!7.51e-13!248;CL:0002202!6.84e-11!9;CL:0002632!6.84e-11!9;CL:0002251!3.49e-10!21;CL:0002159!1.79e-09!13;CL:0002077!2.89e-08!33;CL:0000244!7.49e-08!4;CL:0000731!7.49e-08!4;CL:0000063!5.80e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:0002076;3.27e-24;42!CL:0002368;1.08e-17;13!CL:0002251;1.01e-16;20!CL:0002159;2.34e-16;14!CL:0000244;2.85e-16;4!CL:0000731;2.85e-16;4!CL:0002621;1.45e-12;3!CL:0000307;5.77e-12;3!CL:0000240;1.25e-10;6!CL:0000311;1.25e-10;6!CL:0000079;1.25e-10;6!CL:0000237;1.25e-10;6!CL:0002202;2.32e-10;9!CL:0002632;2.32e-10;9!CL:0002327;2.68e-09;4!CL:0000575;2.56e-08;2!CL:0002536;6.05e-08;2!CL:0002077;6.09e-08;34!CL:0000312;1.53e-07;5!CL:0000362;4.95e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.52e-31,253;CL:0002076,7.11e-31,42;CL:0000223,5.99e-21,58;CL:0002368,1.16e-17,13;CL:0002251,1.62e-16,20;CL:0002159,2.60e-16,14;CL:0000244,2.92e-16,4;CL:0000731,2.92e-16,4;CL:0002621,1.24e-12,3;CL:0000068,7.10e-12,3;CL:0000069,7.10e-12,3;CL:0000307,7.10e-12,3;CL:0000377,7.10e-12,3;CL:0000240,1.51e-10,6;CL:0000311,1.51e-10,6;CL:0000079,1.51e-10,6;CL:0000237,1.51e-10,6;CL:0000036,1.51e-10,6;CL:0000357,1.51e-10,6;CL:0000114,1.51e-10,6;CL:0002202,2.64e-10,9;CL:0002632,2.64e-10,9;CL:0000076,1.91e-09,63;CL:0002327,1.94e-09,4;CL:0002077,3.57e-09,34;CL:0002321,5.70e-09,250;CL:0000575,2.51e-08,2;CL:0002536,4.06e-08,2;CL:0000312,1.85e-07,5;CL:0000362,5.45e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;8.52e-13;58!CL:0000377;5.77e-12;3!CL:0000357;1.25e-10;6!CL:0000114;1.25e-10;6 | |||
|ontology_enrichment_disease=DOID:1749!1.40e-15!14;DOID:305!6.02e-07!106 | |ontology_enrichment_disease=DOID:1749!1.40e-15!14;DOID:305!6.02e-07!106 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.99e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.51e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.52e-10!169;UBERON:0000925!2.52e-10!169;UBERON:0006595!2.52e-10!169;UBERON:0005910!6.52e-10!6;UBERON:0005911!9.19e-10!82;UBERON:0005631!5.86e-09!14;UBERON:0000158!5.86e-09!14;UBERON:0000365!7.02e-09!5;UBERON:0003729!3.96e-08!5;UBERON:0007196!9.93e-08!14;UBERON:0001558!9.93e-08!14;UBERON:0005153!1.24e-07!37;UBERON:0001004!1.57e-07!72;UBERON:0000305!4.91e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;2.38e-15;12!UBERON:0003729;2.92e-13;13!UBERON:0000365;5.02e-13;5!UBERON:0001949;1.45e-12;3!UBERON:0005910;7.40e-11;6!UBERON:0001911;2.68e-09;4!UBERON:0000161;1.13e-08;19!UBERON:0000166;1.13e-08;19!UBERON:0003343;1.99e-08;4!UBERON:0004785;1.99e-08;4!UBERON:0000344;2.89e-08;20!UBERON:0000165;2.74e-07;28!UBERON:0006554;8.48e-07;30!UBERON:0001008;8.48e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003729,3.89e-13,13;UBERON:0000365,5.11e-13,5;UBERON:0001949,1.24e-12,3;UBERON:0005910,7.51e-11,6;UBERON:0004119,2.57e-10,160;UBERON:0000925,2.57e-10,160;UBERON:0006595,2.57e-10,160;UBERON:0001911,1.94e-09,4;UBERON:0005333,1.94e-09,4;UBERON:0008425,1.94e-09,4;UBERON:0005311,1.94e-09,4;UBERON:0006554,5.97e-09,47;UBERON:0001008,1.03e-08,48;UBERON:0003343,3.36e-08,4;UBERON:0004785,3.36e-08,4;UBERON:0000344,3.45e-08,20;UBERON:0003102,5.00e-08,99;UBERON:0001004,6.41e-08,74;UBERON:0000166,2.87e-07,22;UBERON:0000033,4.58e-07,56;UBERON:0000165,6.36e-07,29;UBERON:0000930,6.36e-07,29;UBERON:0000161,8.44e-07,36 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,1.74753097704138,1.58260186937072,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0.919421224478927,2.409647350226,4.06729411183466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.0654895377488563,3.64295288292542,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61131726843659,0,0.24406205754817,0.367663080345869,0.81014194788176,0.0892997282840798,0,0,1.53316637465883,0,0,0,0,3.05265836499774,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0158686303079,18.8194823207676,2.86804595389004,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,23.8158119336717,1.1240175325762,8.04231779293047,5.64789515467031,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0.93733833986777,14.2784808969031,4.82035330624114,17.8221460178668,8.71901815541886,1.91691339582606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0.500170521059677,0.271265023699736,0,0,0.157702415033935,0.234282829985426,0,0,0,0,0,0,0,0,0,0,0,1.5156378572313,1.66435439510497,0.907170879989041,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0.116210378459959,0.120859449591622,21.4541923224515,3.03867263488458,0,0,0,0,2.54150612444569,0,0,2.11103257785751,0,0,0,0,0,0,1.27438136522519,1.66215201785745,0.223874754722178,0,0,0.256450125116389,0,0,0,0,0,0,3.90036147621913,0,0,0.154048617114644,0,0.137836572484531,0,0,0,0,14.7103574671271,7.11103249250893,0.893288987462089,2.6301023022443,0,0,0,0.308033580176089,0,0,0.18532421910392,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0.66343897524122,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0,2.11688647996127,2.01090682660736,3.26672954583968,0,5.59656984472599,3.36942951335251,5.32116184244011,59.7280840538095,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0.296964680832639,0.307160702099232,0,0,0.333926115068718,0,0,0,0,0,0,0,0,0.718946809178615,0,0,0,0,0,0,0,0,0,0,0,1.593108275997,0.762760950878299,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,1.06606955203727,0,0,0,0,0,0,0,0,4.21996129056054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0.173559738335131,1.07791637155815,0.783532859223623,0.17472666824203,0,0,0,0,0,0,0,0.137041924646751,0,0,0.195551382734803,0.480952921509202,0,0,0,0,0,1.7286575758578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0.0524545881349981,0.739202355635845,0,0.191915197319445,0,0,0,0,1.72844298240254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0.638341257770182,0,0,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0,0,0,0,0,0.941063278792687,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0.310525913752519,0,0,0,0,0,0,0,0.214821114084977,0,0.398095888698616,0,0,0,0,0,0,0,0,0.231522474323834,0.244736704506468,0,0.308801447160972,0.438568099157414,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39879507719444,2.48830904013189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17777262201231,1.06172751012966,0.366857197043358,1.38630799380406,0,0,0,0,0,0,0,0.163771917510097,1.18284868973636,0,0,0,0,0,0,0,0,1.14986184875636,0,0,0,0,0,0,0,0,0,0,0.444925607568277,0,0,0,0,0.431855182437243,0,0,0,0,0,0,2.07216164163037,0.17071847709395,0,0,0,0,0,0.9164274741762,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0.437119121007915,0.470317296361523,0,0,0,0,0,0,0,0,0,0.178553938605658,1.76447435857846,0.641930933513346,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0.33639558774184,0,0.202117188958219,0,0,0,0.143444410785353,0,0.325613074443898,0.320182037633146,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,1.74753097704138,1.58260186937072,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0.919421224478927,2.409647350226,4.06729411183466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.0654895377488563,3.64295288292542,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61131726843659,0,0.24406205754817,0.367663080345869,0.81014194788176,0.0892997282840798,0,0,1.53316637465883,0,0,0,0,3.05265836499774,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0158686303079,18.8194823207676,2.86804595389004,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,23.8158119336717,1.1240175325762,8.04231779293047,5.64789515467031,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0.93733833986777,14.2784808969031,4.82035330624114,17.8221460178668,8.71901815541886,1.91691339582606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0.500170521059677,0.271265023699736,0,0,0.157702415033935,0.234282829985426,0,0,0,0,0,0,0,0,0,0,0,1.5156378572313,1.66435439510497,0.907170879989041,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0.116210378459959,0.120859449591622,21.4541923224515,3.03867263488458,0,0,0,0,2.54150612444569,0,0,2.11103257785751,0,0,0,0,0,0,1.27438136522519,1.66215201785745,0.223874754722178,0,0,0.256450125116389,0,0,0,0,0,0,3.90036147621913,0,0,0.154048617114644,0,0.137836572484531,0,0,0,0,14.7103574671271,7.11103249250893,0.893288987462089,2.6301023022443,0,0,0,0.308033580176089,0,0,0.18532421910392,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0.66343897524122,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0,2.11688647996127,2.01090682660736,3.26672954583968,0,5.59656984472599,3.36942951335251,5.32116184244011,59.7280840538095,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0.296964680832639,0.307160702099232,0,0,0.333926115068718,0,0,0,0,0,0,0,0,0.718946809178615,0,0,0,0,0,0,0,0,0,0,0,1.593108275997,0.762760950878299,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,1.06606955203727,0,0,0,0,0,0,0,0,4.21996129056054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0.173559738335131,1.07791637155815,0.783532859223623,0.17472666824203,0,0,0,0,0,0,0,0.137041924646751,0,0,0.195551382734803,0.480952921509202,0,0,0,0,0,1.7286575758578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0.0524545881349981,0.739202355635845,0,0.191915197319445,0,0,0,0,1.72844298240254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0.638341257770182,0,0,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0,0,0,0,0,0.941063278792687,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0.310525913752519,0,0,0,0,0,0,0,0.214821114084977,0,0.398095888698616,0,0,0,0,0,0,0,0,0.231522474323834,0.244736704506468,0,0.308801447160972,0.438568099157414,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39879507719444,2.48830904013189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17777262201231,1.06172751012966,0.366857197043358,1.38630799380406,0,0,0,0,0,0,0,0.163771917510097,1.18284868973636,0,0,0,0,0,0,0,0,1.14986184875636,0,0,0,0,0,0,0,0,0,0,0.444925607568277,0,0,0,0,0.431855182437243,0,0,0,0,0,0,2.07216164163037,0.17071847709395,0,0,0,0,0,0.9164274741762,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0.437119121007915,0.470317296361523,0,0,0,0,0,0,0,0,0,0.178553938605658,1.76447435857846,0.641930933513346,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0.33639558774184,0,0.202117188958219,0,0,0,0.143444410785353,0,0.325613074443898,0.320182037633146,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:183206616..183206643,- | |short_description=p@chr1:183206616..183206643,- | ||
}} | }} |
Latest revision as of 01:09, 28 July 2015
Short description: | p@chr1:183206616..183206643, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:183206616..183206643, - |
Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mouth mucosa | 3.89e-13 | 13 |
urothelium | 5.11e-13 | 5 |
gingival epithelium | 1.24e-12 | 3 |
transitional epithelium | 7.51e-11 | 6 |
endoderm-derived structure | 2.57e-10 | 160 |
endoderm | 2.57e-10 | 160 |
presumptive endoderm | 2.57e-10 | 160 |
mammary gland | 1.94e-09 | 4 |
mammary bud | 1.94e-09 | 4 |
mammary ridge | 1.94e-09 | 4 |
mammary placode | 1.94e-09 | 4 |
urinary system structure | 5.97e-09 | 47 |
renal system | 1.03e-08 | 48 |
mucosa of oral region | 3.36e-08 | 4 |
respiratory system mucosa | 3.36e-08 | 4 |
mucosa | 3.45e-08 | 20 |
surface structure | 5.00e-08 | 99 |
respiratory system | 6.41e-08 | 74 |
oral opening | 2.87e-07 | 22 |
head | 4.58e-07 | 56 |
mouth | 6.36e-07 | 29 |
stomodeum | 6.36e-07 | 29 |
orifice | 8.44e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.51e-08 | 14 |