FFCP PHASE1:Hg19::chr1:211565263..211565280,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C556|description=CAGE_peak_at_chr1:211565263..211565280,+|id=chr1:211565263..211565280,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:201!3.38e-07!6;DOID:0060100!3.38e-07!6|ontology_enrichment_disease_v019=DOID:4929;5.15e-21;2|ontology_enrichment_disease_v019_2=DOID:4929,5.70e-21,2|ontology_enrichment_uberon=UBERON:0002294!2.31e-16!7;UBERON:0001173!2.31e-16!7;UBERON:0004912!2.31e-16!7;UBERON:0002394!3.29e-11!4;UBERON:0003928!3.29e-11!4;UBERON:0002110!6.55e-07!3;UBERON:0006242!6.55e-07!3|ontology_enrichment_uberon_v019=UBERON:0004913;1.81e-40;1!UBERON:0003703;1.81e-40;1!UBERON:0001174;1.81e-40;1!UBERON:0004914;1.81e-40;1!UBERON:0002394;3.31e-40;4!UBERON:0003928;3.31e-40;4!UBERON:0002294;1.61e-23;7!UBERON:0001173;1.61e-23;7!UBERON:0006562;3.11e-21;2!UBERON:0003127;5.15e-21;2!UBERON:0000058;8.13e-17;10!UBERON:0002114;1.71e-14;2!UBERON:0002108;3.10e-09;4!UBERON:0002423;2.43e-07;25!UBERON:0003126;5.86e-07;7!UBERON:0001005;5.86e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0004913,2.21e-40,1;UBERON:0003703,2.21e-40,1;UBERON:0001174,2.21e-40,1;UBERON:0004914,2.21e-40,1;UBERON:0002394,2.72e-27,6;UBERON:0003928,2.72e-27,6;UBERON:0003127,6.96e-21,2;UBERON:0002294,1.35e-18,9;UBERON:0001173,1.35e-18,9;UBERON:0004912,1.35e-18,9;UBERON:0002114,1.83e-14,2;UBERON:0000058,2.26e-09,19;UBERON:0002108,3.22e-09,4;UBERON:0008835,3.15e-08,22;UBERON:0003894,3.15e-08,22;UBERON:0009854,6.52e-08,23;UBERON:0007499,2.35e-07,25;UBERON:0009497,2.35e-07,25;UBERON:0000015,2.35e-07,25;UBERON:0002423,2.35e-07,25;UBERON:0006235,2.35e-07,25;UBERON:0004161,2.35e-07,25;UBERON:0009856,4.15e-07,26;UBERON:0003126,6.39e-07,7;UBERON:0001005,6.39e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43216939740487,0,0,0,0,0,0,0,0,0.0874599999961957,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0.189753732724185,0,0,0,0,0,0,0.265372693510018,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0.225980740780532,0,0.19871461170299,0,0,0.0801588202515337,0.426905989478705,0,0,0,0,0,0,0,0.271808412147228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0.172214979660816,0,0.184105950251841,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,1.03499260351932,0,0,0,0,0,0,0,0,6.89917109253815,0,0,0,0,0,0,0,0.0679697329768317,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617393264863557,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0.0757786982182394,1.07185652062471,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0.0673520530145875,1.00411087549747,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr1:211565263..211565280,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C556 | |||
|description=CAGE_peak_at_chr1:211565263..211565280,+ | |||
|id=chr1:211565263..211565280,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:201!3.38e-07!6;DOID:0060100!3.38e-07!6 | |||
|ontology_enrichment_disease_v019=DOID:4929;5.15e-21;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,5.70e-21,2 | |||
|ontology_enrichment_uberon=UBERON:0002294!2.31e-16!7;UBERON:0001173!2.31e-16!7;UBERON:0004912!2.31e-16!7;UBERON:0002394!3.29e-11!4;UBERON:0003928!3.29e-11!4;UBERON:0002110!6.55e-07!3;UBERON:0006242!6.55e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004913;1.81e-40;1!UBERON:0003703;1.81e-40;1!UBERON:0001174;1.81e-40;1!UBERON:0004914;1.81e-40;1!UBERON:0002394;3.31e-40;4!UBERON:0003928;3.31e-40;4!UBERON:0002294;1.61e-23;7!UBERON:0001173;1.61e-23;7!UBERON:0006562;3.11e-21;2!UBERON:0003127;5.15e-21;2!UBERON:0000058;8.13e-17;10!UBERON:0002114;1.71e-14;2!UBERON:0002108;3.10e-09;4!UBERON:0002423;2.43e-07;25!UBERON:0003126;5.86e-07;7!UBERON:0001005;5.86e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,2.21e-40,1;UBERON:0003703,2.21e-40,1;UBERON:0001174,2.21e-40,1;UBERON:0004914,2.21e-40,1;UBERON:0002394,2.72e-27,6;UBERON:0003928,2.72e-27,6;UBERON:0003127,6.96e-21,2;UBERON:0002294,1.35e-18,9;UBERON:0001173,1.35e-18,9;UBERON:0004912,1.35e-18,9;UBERON:0002114,1.83e-14,2;UBERON:0000058,2.26e-09,19;UBERON:0002108,3.22e-09,4;UBERON:0008835,3.15e-08,22;UBERON:0003894,3.15e-08,22;UBERON:0009854,6.52e-08,23;UBERON:0007499,2.35e-07,25;UBERON:0009497,2.35e-07,25;UBERON:0000015,2.35e-07,25;UBERON:0002423,2.35e-07,25;UBERON:0006235,2.35e-07,25;UBERON:0004161,2.35e-07,25;UBERON:0009856,4.15e-07,26;UBERON:0003126,6.39e-07,7;UBERON:0001005,6.39e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43216939740487,0,0,0,0,0,0,0,0,0.0874599999961957,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0.189753732724185,0,0,0,0,0,0,0.265372693510018,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0.225980740780532,0,0.19871461170299,0,0,0.0801588202515337,0.426905989478705,0,0,0,0,0,0,0,0.271808412147228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0.172214979660816,0,0.184105950251841,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,1.03499260351932,0,0,0,0,0,0,0,0,6.89917109253815,0,0,0,0,0,0,0,0.0679697329768317,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617393264863557,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0.0757786982182394,1.07185652062471,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0.0673520530145875,1.00411087549747,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:211565263..211565280,+ | |||
}} |
Revision as of 03:28, 12 September 2013
Short description: | p@chr1:211565263..211565280, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:211565263..211565280, + |
Coexpression cluster: | C556_pharyngeal_Gingival_Retinal_lung_Mallassezderived_Small_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 2.21e-40 | 1 |
extrahepatic bile duct | 2.21e-40 | 1 |
common bile duct | 2.21e-40 | 1 |
duodenal papilla | 2.21e-40 | 1 |
bile duct | 2.72e-27 | 6 |
digestive system duct | 2.72e-27 | 6 |
open tracheal system trachea | 6.96e-21 | 2 |
biliary system | 1.35e-18 | 9 |
biliary tree | 1.35e-18 | 9 |
biliary bud | 1.35e-18 | 9 |
duodenum | 1.83e-14 | 2 |
duct | 2.26e-09 | 19 |
small intestine | 3.22e-09 | 4 |
hepatic diverticulum | 3.15e-08 | 22 |
liver primordium | 3.15e-08 | 22 |
digestive tract diverticulum | 6.52e-08 | 23 |
epithelial sac | 2.35e-07 | 25 |
epithelium of foregut-midgut junction | 2.35e-07 | 25 |
anatomical boundary | 2.35e-07 | 25 |
hepatobiliary system | 2.35e-07 | 25 |
foregut-midgut junction | 2.35e-07 | 25 |
septum transversum | 2.35e-07 | 25 |
sac | 4.15e-07 | 26 |
trachea | 6.39e-07 | 7 |
respiratory airway | 6.39e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 5.70e-21 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.