FFCP PHASE1:Hg19::chr2:29337060..29337092,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=79745|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26108|TSSclassifier=N|UniProt=A8K6D0,Q8N3C7|association_with_transcript=198bp_to_ENST00000402240,ENST00000404424,uc010ezm.1_5end|coexpression_cluster_id=C92|description=CAGE_peak_3_at_CLIP4_5end|id=chr2:29337060..29337092,+|ontology_enrichment_celltype=CL:0002009!2.67e-31!65;CL:0000557!3.16e-31!71;CL:0002057!5.13e-31!42;CL:0002194!1.29e-30!63;CL:0000576!1.29e-30!63;CL:0000040!1.29e-30!63;CL:0000559!1.29e-30!63;CL:0000860!8.36e-30!45;CL:0000839!2.96e-29!70;CL:0000766!2.73e-28!76;CL:0002087!1.57e-14!119;CL:0000738!1.59e-14!140;CL:0002031!2.01e-14!124;CL:0000763!3.61e-13!112;CL:0000049!3.61e-13!112;CL:0000063!2.01e-09!578;CL:0002393!3.08e-08!9;CL:0002397!3.08e-08!9;CL:0000037!1.75e-07!172;CL:0000566!1.75e-07!172;CL:0002032!6.60e-07!165;CL:0000837!6.60e-07!165|ontology_enrichment_celltype_v019=CL:0000860;2.68e-32;33!CL:0002057;2.68e-32;33!CL:0000473;3.29e-29;39!CL:0000234;3.29e-29;39!CL:0000576;2.91e-28;48!CL:0000766;1.42e-20;69!CL:0000763;1.51e-08;100!CL:0002393;5.83e-08;6!CL:0002397;5.83e-08;6|ontology_enrichment_celltype_v019_2=CL:0000473,1.26e-48,48;CL:0000234,1.26e-48,48;CL:0000860,5.73e-46,42;CL:0002057,5.73e-46,42;CL:0000557,2.53e-42,67;CL:0002194,1.10e-41,59;CL:0000576,1.10e-41,59;CL:0000040,1.10e-41,59;CL:0000559,1.10e-41,59;CL:0002009,1.24e-41,61;CL:0000766,1.06e-40,72;CL:0000839,6.05e-40,66;CL:0000763,3.84e-22,108;CL:0000049,3.84e-22,108;CL:0000738,1.77e-16,136;CL:0002087,2.60e-16,115;CL:0002031,1.05e-15,120;CL:0002393,1.32e-11,9;CL:0002397,1.32e-11,9;CL:0000037,3.07e-10,168;CL:0002032,8.53e-10,161;CL:0000837,8.53e-10,161;CL:0000988,7.64e-09,177|ontology_enrichment_development_v019=CL:0002057;5.65e-33;42!CL:0000049;2.88e-07;108|ontology_enrichment_disease=DOID:1749!4.57e-08!14|ontology_enrichment_disease_v019=DOID:1749;7.52e-12;14|ontology_enrichment_disease_v019_2=DOID:1749,9.69e-12,14;DOID:305,2.28e-10,106|ontology_enrichment_uberon=UBERON:0002371!5.31e-26!80;UBERON:0002390!2.07e-23!102;UBERON:0003061!2.07e-23!102;UBERON:0001474!9.89e-23!86;UBERON:0002193!2.86e-19!112;UBERON:0004765!6.25e-19!101;UBERON:0001434!6.25e-19!101;UBERON:0002405!4.45e-15!115;UBERON:0000926!1.33e-08!448;UBERON:0004120!1.33e-08!448;UBERON:0006603!1.33e-08!448;UBERON:0002204!1.46e-08!167;UBERON:0003081!3.01e-08!216;UBERON:0000062!2.70e-07!511|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.84e-36,76;UBERON:0001474,4.41e-32,82;UBERON:0002390,8.02e-30,98;UBERON:0003061,8.02e-30,98;UBERON:0004765,2.01e-29,90;UBERON:0002405,4.90e-27,93;UBERON:0002193,4.09e-26,108;UBERON:0001434,2.08e-24,100;UBERON:0002204,9.31e-09,167;UBERON:0003081,1.10e-08,203|phase1_expression=0.54503513781167,0.214100523890983,1.69145284915165,1.0007329835313,0,0,0,0,0,0.245733936501509,0,0,0,0,0,1.34465029290355,0.602694528023977,1.46062018077475,0,0,0,0,0,0.136874425072884,0,0,0,0,30.2890493173656,14.9693465257913,22.9127862507792,0.919421224478927,0,1.10926203050036,0,0,0,9.41792194504192,3.00816671205213,8.68043482863407,3.13481663935894,3.56283032620878,2.57575567634187,15.4122133106339,8.69114670484262,14.7976277324568,15.1078873988695,4.93401465626191,13.0076675775944,11.7953880852082,8.96562472851852,14.8983804829809,15.1688099524112,11.6187243045089,21.6682378550947,15.247629502951,5.73102915121476,13.7081325511502,15.9163624032869,10.9115869205872,12.1474053901818,9.89553900560148,11.9678194572979,14.0654167675789,10.447532590629,1.70215567407342,4.9825779919646,7.03496262718881,9.90817544998383,16.9407298869991,13.3187890579341,4.78760926783834,8.54448446090388,44.3636101255078,27.2133503955256,56.3981756417531,7.63834691796167,10.0618518203809,12.5365957623723,83.2237211724446,60.0728365141252,75.8056238123231,0,1.09227722252426,0,0.853460445133014,0.800791974072025,0.574752439954483,0,0.954053754535364,0.569212969109448,0.587237189370939,0.382273228125229,0,1.12101712596307,0.263384084775077,0.196709770113833,0,0,0.167186495390678,0,0,0,0.222820913770347,0.294605907474837,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.752875595388864,0,0,0.710331756132051,0,0,0,0,0,0,0.255725123687061,0.361439152384566,0,0,0,0,0,0,0,0.458426764241994,0,0,0.324547393654683,1.0447784237956,0.398873881556595,0.238490624305342,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,0.633152558322899,1.05927344650575,0.286836620748814,0,0.560677600142307,0,0.98667019366864,0.311211035399766,0.404132016209064,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0.612975591598039,0,0,0.89694817844431,0,0,0.900273288253207,0.206105058476878,1.8034837803194,0.744467425326359,0.337552664482532,0,1.51460264546469,0.0920498986422993,0,0.355009592516614,0.302256294682921,0,5.9910864480622,2.45471508531751,2.00763216772303,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0.590789906681404,0,0.491953754172454,0.17156781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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=79745 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26108 | |||
|TSSclassifier=N | |||
|UniProt=A8K6D0,Q8N3C7 | |||
|association_with_transcript=198bp_to_ENST00000402240,ENST00000404424,uc010ezm.1_5end | |||
|coexpression_cluster_id=C92 | |||
|description=CAGE_peak_3_at_CLIP4_5end | |||
|id=chr2:29337060..29337092,+ | |||
|ontology_enrichment_celltype=CL:0002009!2.67e-31!65;CL:0000557!3.16e-31!71;CL:0002057!5.13e-31!42;CL:0002194!1.29e-30!63;CL:0000576!1.29e-30!63;CL:0000040!1.29e-30!63;CL:0000559!1.29e-30!63;CL:0000860!8.36e-30!45;CL:0000839!2.96e-29!70;CL:0000766!2.73e-28!76;CL:0002087!1.57e-14!119;CL:0000738!1.59e-14!140;CL:0002031!2.01e-14!124;CL:0000763!3.61e-13!112;CL:0000049!3.61e-13!112;CL:0000063!2.01e-09!578;CL:0002393!3.08e-08!9;CL:0002397!3.08e-08!9;CL:0000037!1.75e-07!172;CL:0000566!1.75e-07!172;CL:0002032!6.60e-07!165;CL:0000837!6.60e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.68e-32;33!CL:0002057;2.68e-32;33!CL:0000473;3.29e-29;39!CL:0000234;3.29e-29;39!CL:0000576;2.91e-28;48!CL:0000766;1.42e-20;69!CL:0000763;1.51e-08;100!CL:0002393;5.83e-08;6!CL:0002397;5.83e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.26e-48,48;CL:0000234,1.26e-48,48;CL:0000860,5.73e-46,42;CL:0002057,5.73e-46,42;CL:0000557,2.53e-42,67;CL:0002194,1.10e-41,59;CL:0000576,1.10e-41,59;CL:0000040,1.10e-41,59;CL:0000559,1.10e-41,59;CL:0002009,1.24e-41,61;CL:0000766,1.06e-40,72;CL:0000839,6.05e-40,66;CL:0000763,3.84e-22,108;CL:0000049,3.84e-22,108;CL:0000738,1.77e-16,136;CL:0002087,2.60e-16,115;CL:0002031,1.05e-15,120;CL:0002393,1.32e-11,9;CL:0002397,1.32e-11,9;CL:0000037,3.07e-10,168;CL:0002032,8.53e-10,161;CL:0000837,8.53e-10,161;CL:0000988,7.64e-09,177 | |||
|ontology_enrichment_development_v019=CL:0002057;5.65e-33;42!CL:0000049;2.88e-07;108 | |||
|ontology_enrichment_disease=DOID:1749!4.57e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;7.52e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,9.69e-12,14;DOID:305,2.28e-10,106 | |||
|ontology_enrichment_uberon=UBERON:0002371!5.31e-26!80;UBERON:0002390!2.07e-23!102;UBERON:0003061!2.07e-23!102;UBERON:0001474!9.89e-23!86;UBERON:0002193!2.86e-19!112;UBERON:0004765!6.25e-19!101;UBERON:0001434!6.25e-19!101;UBERON:0002405!4.45e-15!115;UBERON:0000926!1.33e-08!448;UBERON:0004120!1.33e-08!448;UBERON:0006603!1.33e-08!448;UBERON:0002204!1.46e-08!167;UBERON:0003081!3.01e-08!216;UBERON:0000062!2.70e-07!511 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.84e-36,76;UBERON:0001474,4.41e-32,82;UBERON:0002390,8.02e-30,98;UBERON:0003061,8.02e-30,98;UBERON:0004765,2.01e-29,90;UBERON:0002405,4.90e-27,93;UBERON:0002193,4.09e-26,108;UBERON:0001434,2.08e-24,100;UBERON:0002204,9.31e-09,167;UBERON:0003081,1.10e-08,203 | |||
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| |||
|short_description=p3@CLIP4 | |||
}} |
Revision as of 18:14, 12 September 2013
Short description: | p3@CLIP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_CLIP4_5end |
Coexpression cluster: | C92_CD14CD16_CD14_Eosinophils_Basophils_Neutrophils_Macrophage_Whole |
Association with transcript: | 198bp_to_ENST00000402240, ENST00000404424, uc010ezm.1_5end |
EntrezGene: | CLIP4 |
HGNC: | 26108 |
UniProt: | A8K6D0Q8N3C7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.26e-48 | 48 |
phagocyte | 1.26e-48 | 48 |
classical monocyte | 5.73e-46 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.73e-46 | 42 |
granulocyte monocyte progenitor cell | 2.53e-42 | 67 |
monopoietic cell | 1.10e-41 | 59 |
monocyte | 1.10e-41 | 59 |
monoblast | 1.10e-41 | 59 |
promonocyte | 1.10e-41 | 59 |
macrophage dendritic cell progenitor | 1.24e-41 | 61 |
myeloid leukocyte | 1.06e-40 | 72 |
myeloid lineage restricted progenitor cell | 6.05e-40 | 66 |
myeloid cell | 3.84e-22 | 108 |
common myeloid progenitor | 3.84e-22 | 108 |
leukocyte | 1.77e-16 | 136 |
nongranular leukocyte | 2.60e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 1.05e-15 | 120 |
intermediate monocyte | 1.32e-11 | 9 |
CD14-positive, CD16-positive monocyte | 1.32e-11 | 9 |
hematopoietic stem cell | 3.07e-10 | 168 |
hematopoietic oligopotent progenitor cell | 8.53e-10 | 161 |
hematopoietic multipotent progenitor cell | 8.53e-10 | 161 |
hematopoietic cell | 7.64e-09 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.84e-36 | 76 |
bone element | 4.41e-32 | 82 |
hematopoietic system | 8.02e-30 | 98 |
blood island | 8.02e-30 | 98 |
skeletal element | 2.01e-29 | 90 |
immune system | 4.90e-27 | 93 |
hemolymphoid system | 4.09e-26 | 108 |
skeletal system | 2.08e-24 | 100 |
musculoskeletal system | 9.31e-09 | 167 |
lateral plate mesoderm | 1.10e-08 | 203 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 9.69e-12 | 14 |
carcinoma | 2.28e-10 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.