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Revision as of 08:08, 26 June 2012

Name:developing epithelial placode
Definition:"A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure." [JB:DEF]
Xrefs:
links:

AEO:0000112
AEO:0000218

EHDAA2:0003112
Synonyms: "epithelial placode" EXACT [AEO:0000112]
Alt_id: EHDAA2:0003112

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000485(simple columnar epithelium),UBERON:0001048(primordium)



Children

is a:UBERON:0001049 (neural tube),UBERON:0003050 (olfactory placode),UBERON:0003051 (ear vesicle),UBERON:0003071 (eye primordium),UBERON:0003075 (neural plate),UBERON:0003894 (liver primordium),UBERON:0004209 (renal vesicle),UBERON:0005081 (ureter ureteric bud),UBERON:0010532 (primitive nephron)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007497 (developing epithelial placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr8:90366581..90366594,-#_bb89b382ec01bf7b8e5f3f2edd211187p@chr8:90366581..90366594, -
1.55e-98FFCP PHASE1:Hg19::chr4:70707713..70707716,-#_bb89b382ec01bf7b8e5f3f2edd211187p@chr4:70707713..70707716, -
1.55e-98FFCP PHASE2:Hg19::chr6:21648948..21648949,+#_bb89b382ec01bf7b8e5f3f2edd211187p@chr6:21648948..21648949, +
1.55e-98FFCP PHASE2:Hg19::chr8:90366581..90366594,-#_bb89b382ec01bf7b8e5f3f2edd211187p@chr8:90366581..90366594, -
1.55e-98FFCP PHASE2:Hg19::chr4:70707713..70707716,-#_bb89b382ec01bf7b8e5f3f2edd211187p@chr4:70707713..70707716, -
1.55e-98FFCP PHASE1:Hg19::chr6:21648948..21648949,+#_bb89b382ec01bf7b8e5f3f2edd211187p@chr6:21648948..21648949, +
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_43170746cb22dd0005a9ffd1c223da97p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_43170746cb22dd0005a9ffd1c223da97p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_43170746cb22dd0005a9ffd1c223da97p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_43170746cb22dd0005a9ffd1c223da97p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_43170746cb22dd0005a9ffd1c223da97p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_43170746cb22dd0005a9ffd1c223da97p1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_43170746cb22dd0005a9ffd1c223da97p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_43170746cb22dd0005a9ffd1c223da97p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_43170746cb22dd0005a9ffd1c223da97p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_43170746cb22dd0005a9ffd1c223da97p2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_43170746cb22dd0005a9ffd1c223da97p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_43170746cb22dd0005a9ffd1c223da97p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_43170746cb22dd0005a9ffd1c223da97p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_43170746cb22dd0005a9ffd1c223da97p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_43170746cb22dd0005a9ffd1c223da97p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_43170746cb22dd0005a9ffd1c223da97p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_43170746cb22dd0005a9ffd1c223da97p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_43170746cb22dd0005a9ffd1c223da97p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_43170746cb22dd0005a9ffd1c223da97p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_43170746cb22dd0005a9ffd1c223da97p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_43170746cb22dd0005a9ffd1c223da97p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_43170746cb22dd0005a9ffd1c223da97p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_43170746cb22dd0005a9ffd1c223da97p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_43170746cb22dd0005a9ffd1c223da97p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_43170746cb22dd0005a9ffd1c223da97p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_43170746cb22dd0005a9ffd1c223da97p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_43170746cb22dd0005a9ffd1c223da97p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_43170746cb22dd0005a9ffd1c223da97p6@Tecta
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_43170746cb22dd0005a9ffd1c223da97p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_43170746cb22dd0005a9ffd1c223da97p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_43170746cb22dd0005a9ffd1c223da97p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_43170746cb22dd0005a9ffd1c223da97p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_43170746cb22dd0005a9ffd1c223da97p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_43170746cb22dd0005a9ffd1c223da97p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_43170746cb22dd0005a9ffd1c223da97p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_43170746cb22dd0005a9ffd1c223da97p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_43170746cb22dd0005a9ffd1c223da97p1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_43170746cb22dd0005a9ffd1c223da97p10@Sec11a
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_43170746cb22dd0005a9ffd1c223da97p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_43170746cb22dd0005a9ffd1c223da97p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_43170746cb22dd0005a9ffd1c223da97p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_43170746cb22dd0005a9ffd1c223da97p2@Otof
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_43170746cb22dd0005a9ffd1c223da97p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_43170746cb22dd0005a9ffd1c223da97p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_43170746cb22dd0005a9ffd1c223da97p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_43170746cb22dd0005a9ffd1c223da97p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_43170746cb22dd0005a9ffd1c223da97p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_43170746cb22dd0005a9ffd1c223da97p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_43170746cb22dd0005a9ffd1c223da97p2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_43170746cb22dd0005a9ffd1c223da97p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_43170746cb22dd0005a9ffd1c223da97p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_43170746cb22dd0005a9ffd1c223da97p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_43170746cb22dd0005a9ffd1c223da97p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_43170746cb22dd0005a9ffd1c223da97p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_43170746cb22dd0005a9ffd1c223da97p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_43170746cb22dd0005a9ffd1c223da97p4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_43170746cb22dd0005a9ffd1c223da97p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_43170746cb22dd0005a9ffd1c223da97p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_43170746cb22dd0005a9ffd1c223da97p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_43170746cb22dd0005a9ffd1c223da97p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_43170746cb22dd0005a9ffd1c223da97p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_43170746cb22dd0005a9ffd1c223da97p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_43170746cb22dd0005a9ffd1c223da97p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_43170746cb22dd0005a9ffd1c223da97p1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_43170746cb22dd0005a9ffd1c223da97p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_43170746cb22dd0005a9ffd1c223da97p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_43170746cb22dd0005a9ffd1c223da97p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_43170746cb22dd0005a9ffd1c223da97p2@Tecta
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_43170746cb22dd0005a9ffd1c223da97p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_43170746cb22dd0005a9ffd1c223da97p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_43170746cb22dd0005a9ffd1c223da97p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_43170746cb22dd0005a9ffd1c223da97p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_43170746cb22dd0005a9ffd1c223da97p3@Tecta
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_43170746cb22dd0005a9ffd1c223da97p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_43170746cb22dd0005a9ffd1c223da97p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_43170746cb22dd0005a9ffd1c223da97p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_43170746cb22dd0005a9ffd1c223da97p3@Strc
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_43170746cb22dd0005a9ffd1c223da97p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_43170746cb22dd0005a9ffd1c223da97p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_43170746cb22dd0005a9ffd1c223da97p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_43170746cb22dd0005a9ffd1c223da97p2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_43170746cb22dd0005a9ffd1c223da97p2@Otof
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_43170746cb22dd0005a9ffd1c223da97p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_43170746cb22dd0005a9ffd1c223da97p3@Gm1322