Personal tools

Difference between revisions of "UBERON:0007497"

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0007497 |name=developing epithelial placode |namespace= |def="A domain of columnar epithelium in an embryo that represents the early stage of the devel...")
 
Line 21: Line 21:
 
|part_of=
 
|part_of=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 +
|is_obsolete=
 +
|preceded_by=
 
}}
 
}}

Revision as of 08:25, 15 June 2012

Name:developing epithelial placode
Definition:"A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure." [JB:DEF]
Xrefs:
links:

AEO:0000112
AEO:0000218

EHDAA2:0003112
Synonyms: "epithelial placode" EXACT [AEO:0000112]
Alt_id: EHDAA2:0003112

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000485(simple columnar epithelium),UBERON:0001048(primordium)



Children

is a:UBERON:0001049 (neural tube),UBERON:0003050 (olfactory placode),UBERON:0003051 (ear vesicle),UBERON:0003071 (eye primordium),UBERON:0003075 (neural plate),UBERON:0003894 (liver primordium),UBERON:0004209 (renal vesicle),UBERON:0005081 (ureter ureteric bud),UBERON:0010532 (primitive nephron)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007497 (developing epithelial placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr6:21648948..21648949,+#_bb89b382ec01bf7b8e5f3f2edd211187p@chr6:21648948..21648949, +
1.55e-98FFCP PHASE2:Hg19::chr8:90366581..90366594,-#_bb89b382ec01bf7b8e5f3f2edd211187p@chr8:90366581..90366594, -
1.55e-98FFCP PHASE2:Hg19::chr4:70707713..70707716,-#_bb89b382ec01bf7b8e5f3f2edd211187p@chr4:70707713..70707716, -
1.55e-98FFCP PHASE1:Hg19::chr6:21648948..21648949,+#_bb89b382ec01bf7b8e5f3f2edd211187p@chr6:21648948..21648949, +
1.55e-98FFCP PHASE1:Hg19::chr8:90366581..90366594,-#_bb89b382ec01bf7b8e5f3f2edd211187p@chr8:90366581..90366594, -
1.55e-98FFCP PHASE1:Hg19::chr4:70707713..70707716,-#_bb89b382ec01bf7b8e5f3f2edd211187p@chr4:70707713..70707716, -
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_43170746cb22dd0005a9ffd1c223da97p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_43170746cb22dd0005a9ffd1c223da97p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_43170746cb22dd0005a9ffd1c223da97p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_43170746cb22dd0005a9ffd1c223da97p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_43170746cb22dd0005a9ffd1c223da97p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_43170746cb22dd0005a9ffd1c223da97p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_43170746cb22dd0005a9ffd1c223da97p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_43170746cb22dd0005a9ffd1c223da97p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_43170746cb22dd0005a9ffd1c223da97p5@Tecta
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_43170746cb22dd0005a9ffd1c223da97p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_43170746cb22dd0005a9ffd1c223da97p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_43170746cb22dd0005a9ffd1c223da97p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_43170746cb22dd0005a9ffd1c223da97p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_43170746cb22dd0005a9ffd1c223da97p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_43170746cb22dd0005a9ffd1c223da97p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_43170746cb22dd0005a9ffd1c223da97p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_43170746cb22dd0005a9ffd1c223da97p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_43170746cb22dd0005a9ffd1c223da97p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_43170746cb22dd0005a9ffd1c223da97p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_43170746cb22dd0005a9ffd1c223da97p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_43170746cb22dd0005a9ffd1c223da97p18@Trpm3
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_43170746cb22dd0005a9ffd1c223da97p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_43170746cb22dd0005a9ffd1c223da97p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_43170746cb22dd0005a9ffd1c223da97p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_43170746cb22dd0005a9ffd1c223da97p4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_43170746cb22dd0005a9ffd1c223da97p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_43170746cb22dd0005a9ffd1c223da97p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_43170746cb22dd0005a9ffd1c223da97p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_43170746cb22dd0005a9ffd1c223da97p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_43170746cb22dd0005a9ffd1c223da97p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_43170746cb22dd0005a9ffd1c223da97p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_43170746cb22dd0005a9ffd1c223da97p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_43170746cb22dd0005a9ffd1c223da97p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_43170746cb22dd0005a9ffd1c223da97p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_43170746cb22dd0005a9ffd1c223da97p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_43170746cb22dd0005a9ffd1c223da97p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_43170746cb22dd0005a9ffd1c223da97p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_43170746cb22dd0005a9ffd1c223da97p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_43170746cb22dd0005a9ffd1c223da97p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_43170746cb22dd0005a9ffd1c223da97p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_43170746cb22dd0005a9ffd1c223da97p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_43170746cb22dd0005a9ffd1c223da97p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_43170746cb22dd0005a9ffd1c223da97p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_43170746cb22dd0005a9ffd1c223da97p3@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_43170746cb22dd0005a9ffd1c223da97p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_43170746cb22dd0005a9ffd1c223da97p1@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_43170746cb22dd0005a9ffd1c223da97p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_43170746cb22dd0005a9ffd1c223da97p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_43170746cb22dd0005a9ffd1c223da97p5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_43170746cb22dd0005a9ffd1c223da97p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_43170746cb22dd0005a9ffd1c223da97p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_43170746cb22dd0005a9ffd1c223da97p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_43170746cb22dd0005a9ffd1c223da97p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_43170746cb22dd0005a9ffd1c223da97p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_43170746cb22dd0005a9ffd1c223da97p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_43170746cb22dd0005a9ffd1c223da97p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_43170746cb22dd0005a9ffd1c223da97p5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_43170746cb22dd0005a9ffd1c223da97p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_43170746cb22dd0005a9ffd1c223da97p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_43170746cb22dd0005a9ffd1c223da97p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_43170746cb22dd0005a9ffd1c223da97p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_43170746cb22dd0005a9ffd1c223da97p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_43170746cb22dd0005a9ffd1c223da97p2@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_43170746cb22dd0005a9ffd1c223da97p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_43170746cb22dd0005a9ffd1c223da97p3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_43170746cb22dd0005a9ffd1c223da97p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_43170746cb22dd0005a9ffd1c223da97p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_43170746cb22dd0005a9ffd1c223da97p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_43170746cb22dd0005a9ffd1c223da97p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_43170746cb22dd0005a9ffd1c223da97p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_43170746cb22dd0005a9ffd1c223da97p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_43170746cb22dd0005a9ffd1c223da97p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_43170746cb22dd0005a9ffd1c223da97p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_43170746cb22dd0005a9ffd1c223da97p1@Tecta
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_43170746cb22dd0005a9ffd1c223da97p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_43170746cb22dd0005a9ffd1c223da97p2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_43170746cb22dd0005a9ffd1c223da97p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_43170746cb22dd0005a9ffd1c223da97p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_43170746cb22dd0005a9ffd1c223da97p4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_43170746cb22dd0005a9ffd1c223da97p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_43170746cb22dd0005a9ffd1c223da97p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_43170746cb22dd0005a9ffd1c223da97p@chr3:31585340..31585360, +