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CL:0000359

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Name:vascular associated smooth muscle cell
Namespace:FANTOM
Definition:"A smooth muscle cell assocatiated with the vasculature." [GOC:dsd, GOC:tfm]
Synonyms: "vascular smooth muscle cell" EXACT []
"VSMC" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000192(smooth muscle cell)
part_of:UBERON:0002049(vasculature)



Children


is a:CL:0002539 (aortic smooth muscle cell),CL:0002588 (smooth muscle cell of the umbilical vein),CL:0002589 (smooth muscle cell of the brachiocephalic vasculature),CL:0002590 (smooth muscle cell of the brain vasculature),CL:0002591 (smooth muscle cell of the pulmonary artery),CL:0002592 (smooth muscle cell of the coronary artery),CL:0002594 (smooth muscle cell of the umbilical artery),CL:0002595 (smooth muscle cell of the subclavian artery),CL:0002596 (smooth muscle cell of the carotid artery)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
  • 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
  • 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
  • 11244-116E2 (Canine hepatocytes, donor1)
  • 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
  • 11284-116I6 (Smooth Muscle Cells - Brachiocephalic, donor1)
  • 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
  • 11286-116I8 (Smooth Muscle Cells - Coronary Artery, donor1)
  • 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
  • 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)

... further results Mouse (Mus musculus)

  • 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
  • 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
  • 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
  • 11244-116E2 (Canine hepatocytes, donor1)
  • 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
  • 11284-116I6 (Smooth Muscle Cells - Brachiocephalic, donor1)
  • 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
  • 11286-116I8 (Smooth Muscle Cells - Coronary Artery, donor1)
  • 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
  • 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000359 (vascular associated smooth muscle cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.38e-95FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_9ab53d05419d0af5bf33aed6e36051c6+, p@chr6:53359400..53359406
5.38e-95FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_9ab53d05419d0af5bf33aed6e36051c6p@chr6:53359400..53359406, +
1.58e-86FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_a0f90605a77bcc42b09e129dc098421dp@chr2:178190171..178190178, +
1.58e-86FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_a0f90605a77bcc42b09e129dc098421dp@chr2:178190171..178190178, +
1.58e-86FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_a0f90605a77bcc42b09e129dc098421dp@chr2:112043522..112043530, -
1.58e-86FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_a0f90605a77bcc42b09e129dc098421dp@chr2:112043522..112043530, -
1.58e-86FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_a0f90605a77bcc42b09e129dc098421dp@chr8:69228447..69228492, +
1.58e-86FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_a0f90605a77bcc42b09e129dc098421dp@chr17:14827154..14827169, -
1.58e-86FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_a0f90605a77bcc42b09e129dc098421dp@chrX:160839744..160839754, +
1.58e-86FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_a0f90605a77bcc42b09e129dc098421dp5@Adamts2
1.58e-86FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_a0f90605a77bcc42b09e129dc098421dp@chrX:160839744..160839754, +
1.58e-86FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_a0f90605a77bcc42b09e129dc098421dp@chr17:87574327..87574332, +
1.58e-86FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_a0f90605a77bcc42b09e129dc098421dp@chr17:14802633..14802637, -
1.58e-86FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_a0f90605a77bcc42b09e129dc098421d+, p@chr17:87574327..87574332
1.58e-86FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_a0f90605a77bcc42b09e129dc098421dp@chr17:14802633..14802637, -
1.58e-86FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_a0f90605a77bcc42b09e129dc098421dp@chr17:14827154..14827169, -
1.58e-86FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_a0f90605a77bcc42b09e129dc098421dp@chr8:69228447..69228492, +
1.58e-86FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_a0f90605a77bcc42b09e129dc098421dp5@Adamts2
2.3e-72FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_60ffac95fdd82899c361bef5158ed515p@chr4:74703497..74703511, +
2.3e-72FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_60ffac95fdd82899c361bef5158ed515p@chr4:74703497..74703511, +
3.38e-72FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_3d0bdc305f01acc9779f43f83eedc906p@chr4:7846444..7846449, -
3.38e-72FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_3d0bdc305f01acc9779f43f83eedc906p@chr4:7846444..7846449, -
8.96e-67FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_f6d8802bbb533f518d4b74fd31ae3b6ap@chr11:102661517..102661541, -
8.96e-67FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_f6d8802bbb533f518d4b74fd31ae3b6ap@chr11:102661517..102661541, -
1.33e-65FFCP PHASE1:Mm9::chr6:128920492..128920498,-#_2e9b248b59526b8d37b7263b96780175p@chr6:128920492..128920498, -
1.33e-65FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_2e9b248b59526b8d37b7263b96780175p@chrX:160840048..160840057, +
1.33e-65FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_2e9b248b59526b8d37b7263b96780175p@chrX:160840025..160840037, +
1.33e-65FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_2e9b248b59526b8d37b7263b96780175p@chrX:160840048..160840057, +
1.33e-65FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_2e9b248b59526b8d37b7263b96780175p6@Npy1r
1.33e-65FFCP PHASE2:Mm9::chr6:128920492..128920498,-#_2e9b248b59526b8d37b7263b96780175p@chr6:128920492..128920498, -
1.33e-65FFCP PHASE1:Mm9::chr17:71340031..71340044,-#_2e9b248b59526b8d37b7263b96780175p5@Myl12b
1.33e-65FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_2e9b248b59526b8d37b7263b96780175p6@Npy1r
1.33e-65FFCP PHASE2:Mm9::chr17:71340031..71340044,-#_2e9b248b59526b8d37b7263b96780175p5@Myl12b
1.33e-65FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_2e9b248b59526b8d37b7263b96780175p@chrX:160840025..160840037, +
1.33e-65FFCP PHASE1:Mm9::chr11:118164535..118164544,-#_2e9b248b59526b8d37b7263b96780175p@chr11:118164535..118164544, -
1.33e-65FFCP PHASE2:Mm9::chr11:118164535..118164544,-#_2e9b248b59526b8d37b7263b96780175p@chr11:118164535..118164544, -
2.21e-65FFCP PHASE1:Mm9::chr4:145000183..145000220,+#_5866c60d8be3f7cc97427622e317e0ccp1@ENSMUST00000150529
2.21e-65FFCP PHASE2:Mm9::chr4:145000183..145000220,+#_5866c60d8be3f7cc97427622e317e0ccp1@ENSMUST00000150529
2.31e-64FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_bbd24c603ba84263ec3989d49216a742p@chr2:134548872..134548879, -
2.31e-64FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_bbd24c603ba84263ec3989d49216a742p@chr2:134548872..134548879, -
7.84e-64FFCP PHASE1:Hg19::chr4:74703963..74703975,+#_bda5c86ef80f11ad326ac731baf6c3b3p@chr4:74703963..74703975, +
7.84e-64FFCP PHASE2:Hg19::chr4:74703963..74703975,+#_bda5c86ef80f11ad326ac731baf6c3b3p@chr4:74703963..74703975, +
3.26e-60FFCP PHASE2:Hg19::chr3:106484411..106484418,+#_2ac31ea89e8d660eed5df217b4db83f2+, p@chr3:106484411..106484418
3.26e-60FFCP PHASE1:Hg19::chr3:106484411..106484418,+#_2ac31ea89e8d660eed5df217b4db83f2p@chr3:106484411..106484418, +
3.28e-58FFCP PHASE2:Mm9::chr14:24251697..24251707,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr14:24251697..24251707, +
3.28e-58FFCP PHASE1:Mm9::chr17:78907550..78907557,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp8@Vit
3.28e-58FFCP PHASE2:Mm9::chr8:69857155..69857159,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr8:69857155..69857159, +
3.28e-58FFCP PHASE2:Mm9::chr1:127573425..127573432,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp12@Gpr39
3.28e-58FFCP PHASE1:Mm9::chr14:24251697..24251707,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr14:24251697..24251707, +
3.28e-58FFCP PHASE1:Mm9::chr17:87544959..87544962,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr17:87544959..87544962, +
3.28e-58FFCP PHASE1:Mm9::chr10:96946110..96946113,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr10:96946110..96946113, +
3.28e-58FFCP PHASE2:Mm9::chr10:96946110..96946113,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr10:96946110..96946113, +
3.28e-58FFCP PHASE1:Mm9::chr17:14817013..14817022,-#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr17:14817013..14817022, -
3.28e-58FFCP PHASE1:Mm9::chrX:160811352..160811356,-#_f8f3e3e47884a9cdc5a0113dff8c29fc-, p@chrX:160811352..160811356
3.28e-58FFCP PHASE1:Mm9::chrX:160839012..160839023,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chrX:160839012..160839023, +
3.28e-58FFCP PHASE2:Mm9::chr17:14817013..14817022,-#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr17:14817013..14817022, -
3.28e-58FFCP PHASE2:Mm9::chrX:160839012..160839023,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chrX:160839012..160839023, +
3.28e-58FFCP PHASE2:Mm9::chr17:87544959..87544962,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr17:87544959..87544962, +
3.28e-58FFCP PHASE2:Mm9::chr10:33816181..33816195,-#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr10:33816181..33816195, -
3.28e-58FFCP PHASE1:Mm9::chr10:33816181..33816195,-#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr10:33816181..33816195, -
3.28e-58FFCP PHASE2:Mm9::chrX:160811352..160811356,-#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chrX:160811352..160811356, -
3.28e-58FFCP PHASE1:Mm9::chr8:69857155..69857159,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr8:69857155..69857159, +
3.28e-58FFCP PHASE2:Mm9::chr17:78907550..78907557,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp8@Vit
3.28e-58FFCP PHASE1:Mm9::chr1:127573425..127573432,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp12@Gpr39
7.95e-58FFCP PHASE1:Hg19::chr4:74702666..74702694,+#_de2d77139faed1fd606be91901dbbc32p3@CXCL6
7.95e-58FFCP PHASE2:Hg19::chr4:74702666..74702694,+#_de2d77139faed1fd606be91901dbbc32p3@CXCL6
2.3e-56FFCP PHASE2:Hg19::chr11:102661008..102661029,-#_a42b79300800b4827977fb1c49290c2dp@chr11:102661008..102661029, -
2.3e-56FFCP PHASE1:Hg19::chr11:102661008..102661029,-#_a42b79300800b4827977fb1c49290c2dp@chr11:102661008..102661029, -
2.36e-55FFCP PHASE2:Hg19::chr8:90556171..90556173,+#_f6a65b35be9dcbee70bb5cfea0b0a408p@chr8:90556171..90556173, +
2.36e-55FFCP PHASE1:Hg19::chr8:90556171..90556173,+#_f6a65b35be9dcbee70bb5cfea0b0a408p@chr8:90556171..90556173, +
3.26e-55FFCP PHASE2:Hg19::chr11:12182490..12182503,+#_aa33e114ca55a403d596be06faec69bbp8@MICAL2
3.26e-55FFCP PHASE1:Hg19::chr11:12182490..12182503,+#_aa33e114ca55a403d596be06faec69bbp8@MICAL2
1.96e-53FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_839cdf666b4a5e7b9c899024fa92f40ep4@ARHGAP22
1.96e-53FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_839cdf666b4a5e7b9c899024fa92f40ep4@ARHGAP22
4.9e-53FFCP PHASE1:Mm9::chr2:113589030..113589077,-#_96f42b384acb46afe83ca4ff9b594f15p@chr2:113589030..113589077, -
4.9e-53FFCP PHASE1:Mm9::chr17:29227828..29227839,-#_96f42b384acb46afe83ca4ff9b594f15p@chr17:29227828..29227839, -
4.9e-53FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_96f42b384acb46afe83ca4ff9b594f15p4@Il6st
4.9e-53FFCP PHASE2:Mm9::chr2:113589030..113589077,-#_96f42b384acb46afe83ca4ff9b594f15p@chr2:113589030..113589077, -
4.9e-53FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_96f42b384acb46afe83ca4ff9b594f15p@chr10:67598037..67598049, -
4.9e-53FFCP PHASE2:Mm9::chr14:24251717..24251731,+#_96f42b384acb46afe83ca4ff9b594f15p@chr14:24251717..24251731, +
4.9e-53FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_96f42b384acb46afe83ca4ff9b594f15p5@Npy1r
4.9e-53FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_96f42b384acb46afe83ca4ff9b594f15p4@Il6st
4.9e-53FFCP PHASE2:Mm9::chr10:67821185..67821217,-#_96f42b384acb46afe83ca4ff9b594f15p@chr10:67821185..67821217, -
4.9e-53FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_96f42b384acb46afe83ca4ff9b594f15p@chr10:67598037..67598049, -
4.9e-53FFCP PHASE2:Mm9::chr17:29227828..29227839,-#_96f42b384acb46afe83ca4ff9b594f15p@chr17:29227828..29227839, -
4.9e-53FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_96f42b384acb46afe83ca4ff9b594f15p@chr7:91081998..91082010, -
4.9e-53FFCP PHASE1:Mm9::chr14:24251717..24251731,+#_96f42b384acb46afe83ca4ff9b594f15p@chr14:24251717..24251731, +
4.9e-53FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_96f42b384acb46afe83ca4ff9b594f15p@chr7:91081998..91082010, -
4.9e-53FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_96f42b384acb46afe83ca4ff9b594f15p5@Npy1r
4.9e-53FFCP PHASE1:Mm9::chr10:67821185..67821217,-#_96f42b384acb46afe83ca4ff9b594f15p@chr10:67821185..67821217, -
7.35e-53FFCP PHASE1:Mm9::chr4:58219542..58219545,-#_91163fccf0d053cf86fd2e19a2d6cb4dp11@Svep1
7.35e-53FFCP PHASE2:Mm9::chr4:58219542..58219545,-#_91163fccf0d053cf86fd2e19a2d6cb4dp11@Svep1
8.3e-53FFCP PHASE2:Hg19::chr22:21138313..21138336,+#_f657530c5b76afa3d385f7bca11b5900p@chr22:21138313..21138336, +
8.3e-53FFCP PHASE1:Hg19::chr22:21138313..21138336,+#_f657530c5b76afa3d385f7bca11b5900p@chr22:21138313..21138336, +
1.1e-52FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_2cfddd2790937b7964de5402122fc7a9p@chrX:160838787..160838800, +
1.1e-52FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_2cfddd2790937b7964de5402122fc7a9p@chrX:160838787..160838800, +
1.65e-52FFCP PHASE1:Mm9::chr1:137662814..137662817,+#_db00ec93d7f736f48c7c94db79e5d5ffp5@Phlda3
1.65e-52FFCP PHASE2:Mm9::chr1:137662814..137662817,+#_db00ec93d7f736f48c7c94db79e5d5ffp5@Phlda3
2.71e-52FFCP PHASE1:Hg19::chr4:74736382..74736398,+#_2ef6f9ce46b8c0a8905593bfdccac379p@chr4:74736382..74736398, +
2.71e-52FFCP PHASE2:Hg19::chr4:74736382..74736398,+#_2ef6f9ce46b8c0a8905593bfdccac379p@chr4:74736382..74736398, +