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CL:0002222

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Name:vertebrate lens cell
Namespace:FANTOM
Definition:"A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye." [GOC:tfm, ISBN:0721662544]
Xrefs:
links:
FMA:70950
Created by:tmeehan
Creation date:2010-09-07T10:38:03Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000066(epithelial cell),CL:0000306(crystallin accumulating cell),CL:0002371(somatic cell)
part_of:UBERON:0000965(lens of camera-type eye)



Children


is a:CL:0002224 (lens epithelial cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002222 (vertebrate lens cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.41e-88FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_62525fd9efbc11171f3ce554eaac3b37p1@CRYBB3
1.41e-88FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_62525fd9efbc11171f3ce554eaac3b37p1@CRYBB3
3.32e-74FFCP PHASE2:Hg19::chr22:25615600..25615611,+#_853714fb28d1c53b7501497cd8e1ad1ep1@CRYBB2
3.32e-74FFCP PHASE1:Hg19::chr22:25615600..25615611,+#_853714fb28d1c53b7501497cd8e1ad1ep1@CRYBB2
5.48e-74FFCP PHASE1:Hg19::chr19:51891222..51891233,-#_c29434cfd2fb817d51655baf61a2df0ap1@LIM2
5.48e-74FFCP PHASE2:Hg19::chr19:51891222..51891233,-#_c29434cfd2fb817d51655baf61a2df0ap1@LIM2
3.8e-56FFCP PHASE2:Hg19::chr22:27017921..27017928,+#_98df0c1d7164d031b01ab5e851941bdcp1@CRYBA4
3.8e-56FFCP PHASE1:Hg19::chr22:27017921..27017928,+#_98df0c1d7164d031b01ab5e851941bdcp1@CRYBA4
3.1e-50FFCP PHASE1:Hg19::chr20:61204240..61204241,+#_1b3f1a09c2ace582bf7bc9f441c21a68p@chr20:61204240..61204241, +
3.1e-50FFCP PHASE1:Hg19::chr13:104778247..104778293,+#_1b3f1a09c2ace582bf7bc9f441c21a68p@chr13:104778247..104778293, +
3.1e-50FFCP PHASE2:Hg19::chr13:104778247..104778293,+#_1b3f1a09c2ace582bf7bc9f441c21a68p@chr13:104778247..104778293, +
3.1e-50FFCP PHASE2:Hg19::chr20:61204240..61204241,+#_1b3f1a09c2ace582bf7bc9f441c21a68p@chr20:61204240..61204241, +
5.14e-50FFCP PHASE2:Hg19::chr14:37642016..37642022,-#_a4397da7f5d422e790ff492d6c59bdcep7@SLC25A21
5.14e-50FFCP PHASE2:Hg19::chr21:44592820..44592840,-#_a4397da7f5d422e790ff492d6c59bdcep2@CU686889
5.14e-50FFCP PHASE1:Hg19::chr14:37642016..37642022,-#_a4397da7f5d422e790ff492d6c59bdcep7@SLC25A21
5.14e-50FFCP PHASE1:Hg19::chr21:44592820..44592840,-#_a4397da7f5d422e790ff492d6c59bdcep2@CU686889
6.6e-50FFCP PHASE1:Hg19::chr21:44592842..44592867,-#_14d6a5d582228d4791d597aeb4a6f8f4p1@CU686889
6.6e-50FFCP PHASE1:Hg19::chr21:44589339..44589372,-#_14d6a5d582228d4791d597aeb4a6f8f4p@chr21:44589339..44589372, -
6.6e-50FFCP PHASE1:Hg19::chr12:132475501..132475504,+#_14d6a5d582228d4791d597aeb4a6f8f4p@chr12:132475501..132475504, +
6.6e-50FFCP PHASE2:Hg19::chr21:44592842..44592867,-#_14d6a5d582228d4791d597aeb4a6f8f4p1@CU686889
6.6e-50FFCP PHASE2:Hg19::chr12:132475501..132475504,+#_14d6a5d582228d4791d597aeb4a6f8f4p@chr12:132475501..132475504, +
6.6e-50FFCP PHASE2:Hg19::chr21:44589339..44589372,-#_14d6a5d582228d4791d597aeb4a6f8f4p@chr21:44589339..44589372, -
6.27e-44FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_9d8bda1a242333c9473d2696560537eep11@PAX6
6.27e-44FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_9d8bda1a242333c9473d2696560537eep11@PAX6
1.92e-41FFCP PHASE1:Hg19::chr3:186262166..186262170,-#_acc6c5dd78ac300aad523af6bea5fbd0p1@CRYGS
1.92e-41FFCP PHASE2:Hg19::chr3:186262166..186262170,-#_acc6c5dd78ac300aad523af6bea5fbd0p1@CRYGS
4.94e-40FFCP PHASE1:Hg19::chr5:112173525..112173532,+#_c7ae718a71e62502e6ccd61a8c64fd44p@chr5:112173525..112173532, +
4.94e-40FFCP PHASE2:Hg19::chr5:112173525..112173532,+#_c7ae718a71e62502e6ccd61a8c64fd44p@chr5:112173525..112173532, +
1.62e-37FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_b2b4823a2fc2b395f558f61113b8d576p7@PTPRU
1.62e-37FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_b2b4823a2fc2b395f558f61113b8d576p7@PTPRU
2.1e-35FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_75030ec8fa9bdd9976e4f5839e61730bp3@SIX6
2.1e-35FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_75030ec8fa9bdd9976e4f5839e61730bp3@SIX6
6.73e-35FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_71c218ffe719484b5124129e7650c4a8p4@SIX6
6.73e-35FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_71c218ffe719484b5124129e7650c4a8p4@SIX6
5.06e-34FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_244931b2dc4ba9c62e62792062f1b36ep@chr11:31667372..31667383, -
5.06e-34FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_244931b2dc4ba9c62e62792062f1b36ep@chr11:31667372..31667383, -
8.36e-34FFCP PHASE1:Hg19::chr19:1470631..1470648,-#_f4c6e3f23468956be84aad8d230c7555p@chr19:1470631..1470648, -
8.36e-34FFCP PHASE2:Hg19::chr19:1470631..1470648,-#_f4c6e3f23468956be84aad8d230c7555p@chr19:1470631..1470648, -
5.55e-33FFCP PHASE1:Hg19::chr21:44589135..44589151,+#_4aa0dd26f84d8b29ecbff14c067b76dfp1@CRYAA
5.55e-33FFCP PHASE2:Hg19::chr21:44589135..44589151,+#_4aa0dd26f84d8b29ecbff14c067b76dfp1@CRYAA
9.55e-33FFCP PHASE1:Hg19::chr17:27573875..27573878,+#_a340bac2244af98fa7baec405ac0dd67p1@CRYBA1
9.55e-33FFCP PHASE2:Hg19::chr17:27573875..27573878,+#_a340bac2244af98fa7baec405ac0dd67p1@CRYBA1
2.74e-29FFCP PHASE2:Hg19::chr2:45168589..45168601,-#_9d735e246c8f66e92a89fd0409a28cf6p2@ENST00000456467
2.74e-29FFCP PHASE1:Hg19::chr2:45168589..45168601,-#_9d735e246c8f66e92a89fd0409a28cf6p2@ENST00000456467
3.65e-29FFCP PHASE1:Hg19::chr7:107883678..107883689,-#_389f029fec4f1b2873f712ecb943a58bp13@NRCAM
3.65e-29FFCP PHASE2:Hg19::chr7:107883678..107883689,-#_389f029fec4f1b2873f712ecb943a58bp13@NRCAM
7.46e-29FFCP PHASE2:Hg19::chr13:114202163..114202178,+#_4a2bf3cf8e3f58ca46c2298e8f3dc2d6p@chr13:114202163..114202178, +
7.46e-29FFCP PHASE1:Hg19::chr13:114202163..114202178,+#_4a2bf3cf8e3f58ca46c2298e8f3dc2d6p@chr13:114202163..114202178, +
1.36e-28FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_e81d975bd536f53137979ea64c6c376bp10@NLGN1
1.36e-28FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_e81d975bd536f53137979ea64c6c376bp10@NLGN1
2.64e-27FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_251ac97212e5e5888893ba8727b1f547p10@SIX3
2.64e-27FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_251ac97212e5e5888893ba8727b1f547p10@SIX3
8.39e-27FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_2cd5d3bd88681bb61fceed450e62617bp2@SIX6
8.39e-27FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_2cd5d3bd88681bb61fceed450e62617bp2@SIX6
5.56e-26FFCP PHASE1:Hg19::chr1:147374915..147374932,+#_a97d2146e948221d187449ba227eca4cp1@GJA8
5.56e-26FFCP PHASE1:Hg19::chr20:35861148..35861151,+#_a97d2146e948221d187449ba227eca4cp@chr20:35861148..35861151, +
5.56e-26FFCP PHASE2:Hg19::chr1:147374915..147374932,+#_a97d2146e948221d187449ba227eca4cp1@GJA8
5.56e-26FFCP PHASE2:Hg19::chr20:35861148..35861151,+#_a97d2146e948221d187449ba227eca4cp@chr20:35861148..35861151, +
5.56e-26FFCP PHASE2:Hg19::chr19:40920692..40920700,-#_a97d2146e948221d187449ba227eca4cp@chr19:40920692..40920700, -
5.56e-26FFCP PHASE1:Hg19::chr19:40920692..40920700,-#_a97d2146e948221d187449ba227eca4cp@chr19:40920692..40920700, -
5.56e-26FFCP PHASE1:Hg19::chr3:150690809..150690822,-#_a97d2146e948221d187449ba227eca4cp3@CLRN1
5.56e-26FFCP PHASE2:Hg19::chr9:75848662..75848671,-#_a97d2146e948221d187449ba227eca4cp@chr9:75848662..75848671, -
5.56e-26FFCP PHASE2:Hg19::chrX:43587410..43587413,+#_a97d2146e948221d187449ba227eca4cp@chrX:43587410..43587413, +
5.56e-26FFCP PHASE1:Hg19::chr9:75848662..75848671,-#_a97d2146e948221d187449ba227eca4cp@chr9:75848662..75848671, -
5.56e-26FFCP PHASE2:Hg19::chr3:150690809..150690822,-#_a97d2146e948221d187449ba227eca4cp3@CLRN1
5.56e-26FFCP PHASE1:Hg19::chrX:43587410..43587413,+#_a97d2146e948221d187449ba227eca4c+, p@chrX:43587410..43587413
7.14e-26FFCP PHASE1:Hg19::chr16:85617064..85617073,-#_671f4df912aa5319e038348dd8788347p@chr16:85617064..85617073, -
7.14e-26FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_671f4df912aa5319e038348dd8788347p30@PDP1
7.14e-26FFCP PHASE2:Hg19::chr21:44592358..44592365,+#_671f4df912aa5319e038348dd8788347p@chr21:44592358..44592365, +
7.14e-26FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_671f4df912aa5319e038348dd8788347p30@PDP1
7.14e-26FFCP PHASE1:Hg19::chr19:41727698..41727705,+#_671f4df912aa5319e038348dd8788347p@chr19:41727698..41727705, +
7.14e-26FFCP PHASE1:Hg19::chr12:56848437..56848442,-#_671f4df912aa5319e038348dd8788347p1@MIP
7.14e-26FFCP PHASE2:Hg19::chr21:44592788..44592807,+#_671f4df912aa5319e038348dd8788347p@chr21:44592788..44592807, +
7.14e-26FFCP PHASE1:Hg19::chr21:44592626..44592635,-#_671f4df912aa5319e038348dd8788347p5@CU686889
7.14e-26FFCP PHASE1:Hg19::chr13:44875179..44875188,-#_671f4df912aa5319e038348dd8788347-, p@chr13:44875179..44875188
7.14e-26FFCP PHASE2:Hg19::chr13:44875179..44875188,-#_671f4df912aa5319e038348dd8788347p@chr13:44875179..44875188, -
7.14e-26FFCP PHASE1:Hg19::chr7:123198284..123198329,-#_671f4df912aa5319e038348dd8788347p3@NDUFA5
7.14e-26FFCP PHASE1:Hg19::chr9:100057272..100057276,+#_671f4df912aa5319e038348dd8788347p@chr9:100057272..100057276, +
7.14e-26FFCP PHASE2:Hg19::chr16:85617064..85617073,-#_671f4df912aa5319e038348dd8788347p@chr16:85617064..85617073, -
7.14e-26FFCP PHASE2:Hg19::chr20:33903184..33903189,-#_671f4df912aa5319e038348dd8788347p11@UQCC
7.14e-26FFCP PHASE1:Hg19::chr4:140656282..140656285,-#_671f4df912aa5319e038348dd8788347p@chr4:140656282..140656285, -
7.14e-26FFCP PHASE2:Hg19::chr7:123198284..123198329,-#_671f4df912aa5319e038348dd8788347p3@NDUFA5
7.14e-26FFCP PHASE2:Hg19::chr2:45154282..45154288,-#_671f4df912aa5319e038348dd8788347p@chr2:45154282..45154288, -
7.14e-26FFCP PHASE2:Hg19::chr19:41727698..41727705,+#_671f4df912aa5319e038348dd8788347p@chr19:41727698..41727705, +
7.14e-26FFCP PHASE1:Hg19::chr19:17137781..17137792,-#_671f4df912aa5319e038348dd8788347p6@CPAMD8
7.14e-26FFCP PHASE2:Hg19::chr13:72440726..72440736,-#_671f4df912aa5319e038348dd8788347p19@DACH1
7.14e-26FFCP PHASE1:Hg19::chr11:65361417..65361421,-#_671f4df912aa5319e038348dd8788347p2@KCNK7
7.14e-26FFCP PHASE1:Hg19::chr2:45154282..45154288,-#_671f4df912aa5319e038348dd8788347p@chr2:45154282..45154288, -
7.14e-26FFCP PHASE1:Hg19::chr21:44592750..44592758,-#_671f4df912aa5319e038348dd8788347p4@CU686889
7.14e-26FFCP PHASE2:Hg19::chr19:17137781..17137792,-#_671f4df912aa5319e038348dd8788347p6@CPAMD8
7.14e-26FFCP PHASE1:Hg19::chr5:124468141..124468176,-#_671f4df912aa5319e038348dd8788347p@chr5:124468141..124468176, -
7.14e-26FFCP PHASE1:Hg19::chr5:45038620..45038622,+#_671f4df912aa5319e038348dd8788347p@chr5:45038620..45038622, +
7.14e-26FFCP PHASE1:Hg19::chr1:45769711..45769721,-#_671f4df912aa5319e038348dd8788347p@chr1:45769711..45769721, -
7.14e-26FFCP PHASE2:Hg19::chr2:10538258..10538282,+#_671f4df912aa5319e038348dd8788347p@chr2:10538258..10538282, +
7.14e-26FFCP PHASE2:Hg19::chr21:44592512..44592521,+#_671f4df912aa5319e038348dd8788347+, p@chr21:44592512..44592521
7.14e-26FFCP PHASE1:Hg19::chr21:44592358..44592365,+#_671f4df912aa5319e038348dd8788347p@chr21:44592358..44592365, +
7.14e-26FFCP PHASE2:Hg19::chr10:73406056..73406065,+#_671f4df912aa5319e038348dd8788347p@chr10:73406056..73406065, +
7.14e-26FFCP PHASE1:Hg19::chr20:33903184..33903189,-#_671f4df912aa5319e038348dd8788347p11@UQCC
7.14e-26FFCP PHASE2:Hg19::chr1:115873480..115873484,+#_671f4df912aa5319e038348dd8788347p@chr1:115873480..115873484, +
7.14e-26FFCP PHASE2:Hg19::chr1:86064794..86064797,+#_671f4df912aa5319e038348dd8788347p1@ENST00000426794