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UBERON:0000965

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Name:lens of camera-type eye
Namespace:FANTOM
Definition:"Transparent part of camera-type eye that helps to refract light to be focused on the retina." [Wikipedia:Lens_(anatomy)]
Xrefs:
links:

AAO:0010348
BTO:0000723
EHDAA:9057
EMAPA:17838
EV:0100343
FMA:58241
MA:0000275
MAT:0000141
MESH:A.09.371.509
MIAA:0000141
ncithesaurus:Crystalline_Lens
OpenCyc:Mx4rvVj0fZwpEbGdrcN5Y29ycA
RETIRED_EHDAA2:0000975
SCTID:181169005
TAO:0000035
VHOG:0000169
XAO:0000008

ZFA:0000035
Synonyms: "camera-type eye lens" EXACT [GO:0002088]
"crystalline lens" RELATED [BTO:0000723]
"eye lens" EXACT SENSU []
"lens" EXACT SENSU []
"lens crystallina" EXACT [Wikipedia:Lens_%28anatomy%29]
"ocular lens" RELATED [BTO:0000723]
Comments:Taxon notes: This class excludes compound eye corneal lenses.
Alt_id: UBERON:FBbt_00004199-FMA_58241-MA_0000275-MIAA_0000141-XAO_0000008-ZFA_0000035
Subset: uberon_slim
vertebrate_core

Ontology association

Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.



link to ontology dataset


data

Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0005389(transparent eye structure)
develops_from:UBERON:0003073(lens placode),UBERON:0005426(lens vesicle)
part_of:UBERON:0001801(anterior segment of eyeball)



Children

part of:UBERON:0001803 (epithelium of lens),CL:0002222 (vertebrate lens cell)

Ontology Tree: Loaded from BioPortal


FF samples

It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term
TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000965 (lens of camera-type eye), sorted by p-values
Analyst: Hideya Kawaji



link to source dataset
human : data

mouse : data

P-valueFFCPShort description
1.41e-88FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_bf7628fdbb77c7c9c868880a0ad37790p1@CRYBB3
1.41e-88FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_bf7628fdbb77c7c9c868880a0ad37790p1@CRYBB3
3.32e-74FFCP PHASE2:Hg19::chr22:25615600..25615611,+#_3501be66381186fb3e195617408f3ce4p1@CRYBB2
3.32e-74FFCP PHASE1:Hg19::chr22:25615600..25615611,+#_3501be66381186fb3e195617408f3ce4p1@CRYBB2
5.48e-74FFCP PHASE2:Hg19::chr19:51891222..51891233,-#_b8f0f55557df01aa5642e9a0d4d2497ep1@LIM2
5.48e-74FFCP PHASE1:Hg19::chr19:51891222..51891233,-#_b8f0f55557df01aa5642e9a0d4d2497ep1@LIM2
3.8e-56FFCP PHASE1:Hg19::chr22:27017921..27017928,+#_c2e50d6bb75fbf6a15f08eabbd28854bp1@CRYBA4
3.8e-56FFCP PHASE2:Hg19::chr22:27017921..27017928,+#_c2e50d6bb75fbf6a15f08eabbd28854bp1@CRYBA4
3.1e-50FFCP PHASE1:Hg19::chr13:104778247..104778293,+#_ca5c5c3b6cf6bd697f33eb909eaa2cf5p@chr13:104778247..104778293, +
3.1e-50FFCP PHASE1:Hg19::chr20:61204240..61204241,+#_ca5c5c3b6cf6bd697f33eb909eaa2cf5p@chr20:61204240..61204241, +
3.1e-50FFCP PHASE2:Hg19::chr13:104778247..104778293,+#_ca5c5c3b6cf6bd697f33eb909eaa2cf5p@chr13:104778247..104778293, +
3.1e-50FFCP PHASE2:Hg19::chr20:61204240..61204241,+#_ca5c5c3b6cf6bd697f33eb909eaa2cf5p@chr20:61204240..61204241, +
5.14e-50FFCP PHASE1:Hg19::chr14:37642016..37642022,-#_4caf4d1f1bd2ff0abb65a6f54bbd7c38p7@SLC25A21
5.14e-50FFCP PHASE2:Hg19::chr14:37642016..37642022,-#_4caf4d1f1bd2ff0abb65a6f54bbd7c38p7@SLC25A21
5.14e-50FFCP PHASE2:Hg19::chr21:44592820..44592840,-#_4caf4d1f1bd2ff0abb65a6f54bbd7c38p2@CU686889
5.14e-50FFCP PHASE1:Hg19::chr21:44592820..44592840,-#_4caf4d1f1bd2ff0abb65a6f54bbd7c38p2@CU686889
6.6e-50FFCP PHASE2:Hg19::chr21:44592842..44592867,-#_f21dd70918184d5d51b8304d91aed573p1@CU686889
6.6e-50FFCP PHASE2:Hg19::chr12:132475501..132475504,+#_f21dd70918184d5d51b8304d91aed573p@chr12:132475501..132475504, +
6.6e-50FFCP PHASE1:Hg19::chr21:44592842..44592867,-#_f21dd70918184d5d51b8304d91aed573p1@CU686889
6.6e-50FFCP PHASE2:Hg19::chr21:44589339..44589372,-#_f21dd70918184d5d51b8304d91aed573p@chr21:44589339..44589372, -
6.6e-50FFCP PHASE1:Hg19::chr21:44589339..44589372,-#_f21dd70918184d5d51b8304d91aed573p@chr21:44589339..44589372, -
6.6e-50FFCP PHASE1:Hg19::chr12:132475501..132475504,+#_f21dd70918184d5d51b8304d91aed573p@chr12:132475501..132475504, +
6.27e-44FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_e8c218d7a11798d28d4e7e47b24acbb2p11@PAX6
6.27e-44FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_e8c218d7a11798d28d4e7e47b24acbb2p11@PAX6
1.92e-41FFCP PHASE1:Hg19::chr3:186262166..186262170,-#_eb39978568cba818d6e32e02f0035198p1@CRYGS
1.92e-41FFCP PHASE2:Hg19::chr3:186262166..186262170,-#_eb39978568cba818d6e32e02f0035198p1@CRYGS
4.94e-40FFCP PHASE1:Hg19::chr5:112173525..112173532,+#_73bf020a98b5a1f6d05a4eb11c02af4fp@chr5:112173525..112173532, +
4.94e-40FFCP PHASE2:Hg19::chr5:112173525..112173532,+#_73bf020a98b5a1f6d05a4eb11c02af4fp@chr5:112173525..112173532, +
1.62e-37FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_0e84c0a9e92db5ba165f7c8b201df4ddp7@PTPRU
1.62e-37FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_0e84c0a9e92db5ba165f7c8b201df4ddp7@PTPRU
2.1e-35FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_fa803b69ae0ce2906078d7f7c08d9ff3p3@SIX6
2.1e-35FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_fa803b69ae0ce2906078d7f7c08d9ff3p3@SIX6
6.73e-35FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_ca62458fc3b136fdbccb6798e6cf7486p4@SIX6
6.73e-35FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_ca62458fc3b136fdbccb6798e6cf7486p4@SIX6
5.06e-34FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_c9c138dd5d177440519d5d3550fa7281p@chr11:31667372..31667383, -
5.06e-34FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_c9c138dd5d177440519d5d3550fa7281p@chr11:31667372..31667383, -
8.36e-34FFCP PHASE1:Hg19::chr19:1470631..1470648,-#_4d2594aee41f6b0adef4df16ecb8b9a5p@chr19:1470631..1470648, -
8.36e-34FFCP PHASE2:Hg19::chr19:1470631..1470648,-#_4d2594aee41f6b0adef4df16ecb8b9a5p@chr19:1470631..1470648, -
5.55e-33FFCP PHASE2:Hg19::chr21:44589135..44589151,+#_e6a1edd1e2367b4c1ab623f897ebb3c6p1@CRYAA
5.55e-33FFCP PHASE1:Hg19::chr21:44589135..44589151,+#_e6a1edd1e2367b4c1ab623f897ebb3c6p1@CRYAA
9.55e-33FFCP PHASE2:Hg19::chr17:27573875..27573878,+#_841f0e4562df6ebadbe03070c0cd0808p1@CRYBA1
9.55e-33FFCP PHASE1:Hg19::chr17:27573875..27573878,+#_841f0e4562df6ebadbe03070c0cd0808p1@CRYBA1
2.74e-29FFCP PHASE1:Hg19::chr2:45168589..45168601,-#_6a8ad5ba345672fb60e4aae9b0a62da5p2@ENST00000456467
2.74e-29FFCP PHASE2:Hg19::chr2:45168589..45168601,-#_6a8ad5ba345672fb60e4aae9b0a62da5p2@ENST00000456467
3.65e-29FFCP PHASE1:Hg19::chr7:107883678..107883689,-#_8bac19553cde3b06335c25326de51b0ep13@NRCAM
3.65e-29FFCP PHASE2:Hg19::chr7:107883678..107883689,-#_8bac19553cde3b06335c25326de51b0ep13@NRCAM
7.46e-29FFCP PHASE2:Hg19::chr13:114202163..114202178,+#_5e0973ef2a9a8f1261fe11caddb62f58p@chr13:114202163..114202178, +
7.46e-29FFCP PHASE1:Hg19::chr13:114202163..114202178,+#_5e0973ef2a9a8f1261fe11caddb62f58p@chr13:114202163..114202178, +
1.36e-28FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_72194d1989075d42e04136a3c48eb207p10@NLGN1
1.36e-28FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_72194d1989075d42e04136a3c48eb207p10@NLGN1
2.64e-27FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_7992cd3a08195f1d2aac3a6862052f7fp10@SIX3
2.64e-27FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_7992cd3a08195f1d2aac3a6862052f7fp10@SIX3
8.39e-27FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_fa704f3d401b243ec1f60d3cda148b1fp2@SIX6
8.39e-27FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_fa704f3d401b243ec1f60d3cda148b1fp2@SIX6
5.56e-26FFCP PHASE1:Hg19::chr20:35861148..35861151,+#_99b3056610c333f5cc0da1456e00e964p@chr20:35861148..35861151, +
5.56e-26FFCP PHASE1:Hg19::chrX:43587410..43587413,+#_99b3056610c333f5cc0da1456e00e964+, p@chrX:43587410..43587413
5.56e-26FFCP PHASE1:Hg19::chr19:40920692..40920700,-#_99b3056610c333f5cc0da1456e00e964p@chr19:40920692..40920700, -
5.56e-26FFCP PHASE2:Hg19::chr1:147374915..147374932,+#_99b3056610c333f5cc0da1456e00e964p1@GJA8
5.56e-26FFCP PHASE2:Hg19::chr20:35861148..35861151,+#_99b3056610c333f5cc0da1456e00e964p@chr20:35861148..35861151, +
5.56e-26FFCP PHASE2:Hg19::chr19:40920692..40920700,-#_99b3056610c333f5cc0da1456e00e964p@chr19:40920692..40920700, -
5.56e-26FFCP PHASE1:Hg19::chr3:150690809..150690822,-#_99b3056610c333f5cc0da1456e00e964p3@CLRN1
5.56e-26FFCP PHASE2:Hg19::chr9:75848662..75848671,-#_99b3056610c333f5cc0da1456e00e964p@chr9:75848662..75848671, -
5.56e-26FFCP PHASE2:Hg19::chrX:43587410..43587413,+#_99b3056610c333f5cc0da1456e00e964p@chrX:43587410..43587413, +
5.56e-26FFCP PHASE2:Hg19::chr3:150690809..150690822,-#_99b3056610c333f5cc0da1456e00e964p3@CLRN1
5.56e-26FFCP PHASE1:Hg19::chr1:147374915..147374932,+#_99b3056610c333f5cc0da1456e00e964p1@GJA8
5.56e-26FFCP PHASE1:Hg19::chr9:75848662..75848671,-#_99b3056610c333f5cc0da1456e00e964p@chr9:75848662..75848671, -
7.14e-26FFCP PHASE2:Hg19::chr12:56848437..56848442,-#_d394e44e71c606f8fbe367682d8ee9d4p1@MIP
7.14e-26FFCP PHASE2:Hg19::chr5:464155..464205,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr5:464155..464205, +
7.14e-26FFCP PHASE1:Hg19::chr2:45154282..45154288,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr2:45154282..45154288, -
7.14e-26FFCP PHASE1:Hg19::chr3:156322310..156322314,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr3:156322310..156322314, -
7.14e-26FFCP PHASE1:Hg19::chr21:44592750..44592758,-#_d394e44e71c606f8fbe367682d8ee9d4p4@CU686889
7.14e-26FFCP PHASE2:Hg19::chr2:693025..693036,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr2:693025..693036, +
7.14e-26FFCP PHASE2:Hg19::chr11:65361417..65361421,-#_d394e44e71c606f8fbe367682d8ee9d4p2@KCNK7
7.14e-26FFCP PHASE1:Hg19::chr13:72440726..72440736,-#_d394e44e71c606f8fbe367682d8ee9d4p19@DACH1
7.14e-26FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_d394e44e71c606f8fbe367682d8ee9d4p30@PDP1
7.14e-26FFCP PHASE2:Hg19::chr21:44592358..44592365,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr21:44592358..44592365, +
7.14e-26FFCP PHASE1:Hg19::chr1:45769711..45769721,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr1:45769711..45769721, -
7.14e-26FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_d394e44e71c606f8fbe367682d8ee9d4p30@PDP1
7.14e-26FFCP PHASE1:Hg19::chr21:44592358..44592365,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr21:44592358..44592365, +
7.14e-26FFCP PHASE2:Hg19::chr21:44592788..44592807,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr21:44592788..44592807, +
7.14e-26FFCP PHASE1:Hg19::chr20:33903184..33903189,-#_d394e44e71c606f8fbe367682d8ee9d4p11@UQCC
7.14e-26FFCP PHASE1:Hg19::chr9:100057272..100057276,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr9:100057272..100057276, +
7.14e-26FFCP PHASE1:Hg19::chr21:44592788..44592807,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr21:44592788..44592807, +
7.14e-26FFCP PHASE2:Hg19::chr16:85617064..85617073,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr16:85617064..85617073, -
7.14e-26FFCP PHASE2:Hg19::chr13:44875179..44875188,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr13:44875179..44875188, -
7.14e-26FFCP PHASE1:Hg19::chr7:123198284..123198329,-#_d394e44e71c606f8fbe367682d8ee9d4p3@NDUFA5
7.14e-26FFCP PHASE1:Hg19::chr4:140656282..140656285,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr4:140656282..140656285, -
7.14e-26FFCP PHASE1:Hg19::chr1:115873480..115873484,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr1:115873480..115873484, +
7.14e-26FFCP PHASE2:Hg19::chr20:33903184..33903189,-#_d394e44e71c606f8fbe367682d8ee9d4p11@UQCC
7.14e-26FFCP PHASE1:Hg19::chr2:10538258..10538282,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr2:10538258..10538282, +
7.14e-26FFCP PHASE1:Hg19::chr1:86064794..86064797,+#_d394e44e71c606f8fbe367682d8ee9d4p1@ENST00000426794
7.14e-26FFCP PHASE2:Hg19::chr19:41727698..41727705,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr19:41727698..41727705, +
7.14e-26FFCP PHASE1:Hg19::chr10:73406056..73406065,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr10:73406056..73406065, +
7.14e-26FFCP PHASE2:Hg19::chr7:123198284..123198329,-#_d394e44e71c606f8fbe367682d8ee9d4p3@NDUFA5
7.14e-26FFCP PHASE2:Hg19::chr2:45154282..45154288,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr2:45154282..45154288, -
7.14e-26FFCP PHASE2:Hg19::chr13:72440726..72440736,-#_d394e44e71c606f8fbe367682d8ee9d4p19@DACH1
7.14e-26FFCP PHASE2:Hg19::chr19:17137781..17137792,-#_d394e44e71c606f8fbe367682d8ee9d4p6@CPAMD8
7.14e-26FFCP PHASE1:Hg19::chr5:124468141..124468176,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr5:124468141..124468176, -
7.14e-26FFCP PHASE1:Hg19::chr5:45038620..45038622,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr5:45038620..45038622, +
7.14e-26FFCP PHASE2:Hg19::chr2:10538258..10538282,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr2:10538258..10538282, +