Personal tools

UBERON:0000117

From FANTOM5_SSTAR

Jump to: navigation, search

Name:respiratory tube
Namespace:FANTOM
Definition:"A tube in the respiratory tract." [GO:0030323]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000025(tube),UBERON:0004119(endoderm-derived structure)
part_of:UBERON:0000065(respiratory tract)



Children

is a:UBERON:0002169 (alveolar sac),UBERON:0002185 (bronchus),UBERON:0003126 (trachea)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000117 (respiratory tube), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.5e-81FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_f3fbdab667fdcefe958295a8bd9d9513p4@Tbx4
3.5e-81FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_f3fbdab667fdcefe958295a8bd9d9513p4@Tbx4
1.94e-76FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_a306b8c8a09ca64c889f4e28537e702bp1@ENSMUST00000134305
1.94e-76FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_a306b8c8a09ca64c889f4e28537e702bp1@ENSMUST00000134305
6.06e-75FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_c48c44c6c854e6955eb7d5e0213131d8p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
6.06e-75FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_c48c44c6c854e6955eb7d5e0213131d8p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
7.98e-75FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_12e652f2711e31f5f72ab730bc78b8cfp6@Tbx4
7.98e-75FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_12e652f2711e31f5f72ab730bc78b8cfp6@Tbx4
3.64e-74FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_d9e2c7d01ba10ae6319033ada804c9cfp@chr4:138812977..138812992, +
3.64e-74FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_d9e2c7d01ba10ae6319033ada804c9cfp@chr12:57636003..57636017, -
3.64e-74FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_d9e2c7d01ba10ae6319033ada804c9cfp@chr8:94878479..94878503, -
3.64e-74FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_d9e2c7d01ba10ae6319033ada804c9cfp@chr12:57598716..57598720, -
3.64e-74FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_d9e2c7d01ba10ae6319033ada804c9cfp@chr11:59457994..59457997, -
3.64e-74FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_d9e2c7d01ba10ae6319033ada804c9cfp@chr4:138812977..138812992, +
3.64e-74FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_d9e2c7d01ba10ae6319033ada804c9cfp@chr8:94878479..94878503, -
3.64e-74FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_d9e2c7d01ba10ae6319033ada804c9cfp@chr11:59457994..59457997, -
3.64e-74FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_d9e2c7d01ba10ae6319033ada804c9cfp@chr12:57598716..57598720, -
3.64e-74FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_d9e2c7d01ba10ae6319033ada804c9cfp@chr12:57636003..57636017, -
3.06e-70FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_a984a87876df5fe27af35aca6ae51014p8@Nkx2-1
3.06e-70FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_a984a87876df5fe27af35aca6ae51014p8@Nkx2-1
3.48e-70FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_3258aea4fcfc859406cd77a222f4852ep2@E030019B13Rik
3.48e-70FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_3258aea4fcfc859406cd77a222f4852ep2@E030019B13Rik
3.96e-70FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_59265621efb50291d2f08cc9b8dc49d5p10@Nebl
3.96e-70FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_59265621efb50291d2f08cc9b8dc49d5p10@Nebl
4.5e-70FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_1d71e052e0fb5663923d3c10d13ccd0bp9@Nkx2-1
4.5e-70FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_1d71e052e0fb5663923d3c10d13ccd0bp9@Nkx2-1
9.69e-69FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_50145c01387588612cbd09e8389f122dp3@E030019B13Rik
9.69e-69FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_50145c01387588612cbd09e8389f122dp@chr12:57598537..57598547, -
9.69e-69FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_50145c01387588612cbd09e8389f122dp3@Trpm6
9.69e-69FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_50145c01387588612cbd09e8389f122dp@chr12:57598537..57598547, -
9.69e-69FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_50145c01387588612cbd09e8389f122dp3@Trpm6
9.69e-69FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_50145c01387588612cbd09e8389f122dp3@E030019B13Rik
1.11e-68FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_dfb119fad7d7e9bde4de06196ed1c8ccp@chr14:115241755..115241762, -
1.11e-68FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_dfb119fad7d7e9bde4de06196ed1c8ccp@chr14:115241755..115241762, -
1.27e-68FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_fb0d71ad1a57885a3eac10529bbdbd5dp@chr4:138812999..138813015, +
1.27e-68FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_fb0d71ad1a57885a3eac10529bbdbd5dp@chr4:138812999..138813015, +
4.47e-68FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_c1de294a58c396c4f26d43f2bcf09dcdp@chr5:120282691..120282701, +
4.47e-68FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_c1de294a58c396c4f26d43f2bcf09dcdp@chr5:120282691..120282701, +
5.44e-68FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_f8623426409c0ad36e14a7d68a228725p@chr14:70922576..70922589, -
5.44e-68FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_f8623426409c0ad36e14a7d68a228725p4@Sftpb
5.44e-68FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_f8623426409c0ad36e14a7d68a228725p@chr1:184610062..184610074, +
5.44e-68FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_f8623426409c0ad36e14a7d68a228725p@chr14:70922576..70922589, -
5.44e-68FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_f8623426409c0ad36e14a7d68a228725p@chr14:70921265..70921285, -
5.44e-68FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_f8623426409c0ad36e14a7d68a228725p@chr1:184610062..184610074, +
5.44e-68FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_f8623426409c0ad36e14a7d68a228725p@chr2:66524237..66524246, -
5.44e-68FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_f8623426409c0ad36e14a7d68a228725p3@Sftpb
5.44e-68FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_f8623426409c0ad36e14a7d68a228725p@chr2:66524237..66524246, -
5.44e-68FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_f8623426409c0ad36e14a7d68a228725p4@Sftpb
5.44e-68FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_f8623426409c0ad36e14a7d68a228725p3@Sftpb
5.44e-68FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_f8623426409c0ad36e14a7d68a228725p@chr14:70921265..70921285, -
5.08e-66FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_8052c8550c5ba3bad57fb231434b2eaep4@E030019B13Rik
5.08e-66FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_8052c8550c5ba3bad57fb231434b2eaep4@E030019B13Rik
4.92e-64FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_62a88db282b165ed97d0499d9edcf6b7p@chr14:70922007..70922052, +
4.92e-64FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_62a88db282b165ed97d0499d9edcf6b7p@chr14:70922007..70922052, +
4.92e-64FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_62a88db282b165ed97d0499d9edcf6b7p@chr12:57623172..57623185, -
4.92e-64FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_62a88db282b165ed97d0499d9edcf6b7p@chr12:57623172..57623185, -
5.59e-64FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_00eaa076779cf7efde16a53c3d9d41d9p@chr5:28785436..28785450, -
5.59e-64FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_00eaa076779cf7efde16a53c3d9d41d9p@chr5:28785436..28785450, -
6.35e-64FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_91565c63a9ac83a0336e95a3330de998p@chr14:70922459..70922482, -
6.35e-64FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_91565c63a9ac83a0336e95a3330de998p@chr14:70922459..70922482, -
2.55e-63FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_796830272404e05d8e65d21e6ab5f267p4@Etv5
2.55e-63FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_796830272404e05d8e65d21e6ab5f267p4@Etv5
1.43e-62FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_48b7f5d541fb7d4144c010b396672543p@chr6:72259797..72259814, +
1.43e-62FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_48b7f5d541fb7d4144c010b396672543p@chr6:72264890..72264911, +
1.43e-62FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_48b7f5d541fb7d4144c010b396672543p4@Lamp3
1.43e-62FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_48b7f5d541fb7d4144c010b396672543p@chr12:57376690..57376716, -
1.43e-62FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_48b7f5d541fb7d4144c010b396672543p@chr14:70922486..70922510, -
1.43e-62FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_48b7f5d541fb7d4144c010b396672543p@chr14:70923240..70923251, -
1.43e-62FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_48b7f5d541fb7d4144c010b396672543p@chr12:57376690..57376716, -
1.43e-62FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_48b7f5d541fb7d4144c010b396672543p4@Lamp3
1.43e-62FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_48b7f5d541fb7d4144c010b396672543p@chr6:72263977..72263993, +
1.43e-62FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_48b7f5d541fb7d4144c010b396672543p@chr6:72264418..72264441, +
1.43e-62FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_48b7f5d541fb7d4144c010b396672543p@chr6:72263977..72263993, +
1.43e-62FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_48b7f5d541fb7d4144c010b396672543p@chr14:70923240..70923251, -
1.43e-62FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_48b7f5d541fb7d4144c010b396672543p@chr6:72264418..72264441, +
1.43e-62FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_48b7f5d541fb7d4144c010b396672543p@chr6:72259797..72259814, +
1.43e-62FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_48b7f5d541fb7d4144c010b396672543p@chr6:72264890..72264911, +
1.43e-62FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_48b7f5d541fb7d4144c010b396672543p@chr14:70922486..70922510, -
1.63e-62FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_7c0c89327d33ff349fa1e08c8d83c39ep@chr6:72264609..72264653, -
1.63e-62FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_7c0c89327d33ff349fa1e08c8d83c39ep@chr6:72264609..72264653, -
1.87e-62FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_d917ae70df43b690a174eba8480cc1b6p@chr6:129378567..129378573, -
1.87e-62FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_d917ae70df43b690a174eba8480cc1b6p@chr6:129378567..129378573, -
1.91e-62FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_d9c4b5831911627e8fe40b53f924f2eap16@Pde5a
1.91e-62FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_d9c4b5831911627e8fe40b53f924f2eap16@Pde5a
3.02e-62FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_2b3c21bf0047ba875da9c42300bcd46bp7@Nkx2-1
3.02e-62FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_2b3c21bf0047ba875da9c42300bcd46bp7@Nkx2-1
5.06e-62FFCP PHASE2:Mm9::chr12:57636936..57636953,-#_dde235fb6128973df4df3845fea0404fp@chr12:57636936..57636953, -
5.06e-62FFCP PHASE1:Mm9::chr12:57636936..57636953,-#_dde235fb6128973df4df3845fea0404fp@chr12:57636936..57636953, -
7.58e-62FFCP PHASE2:Mm9::chr14:41949964..41949979,+#_6761674fca075e9247dbe36e9bd710fap@chr14:41949964..41949979, +
7.58e-62FFCP PHASE2:Mm9::chr2:152591095..152591110,-#_6761674fca075e9247dbe36e9bd710fap@chr2:152591095..152591110, -
7.58e-62FFCP PHASE2:Mm9::chr16:19673341..19673350,-#_6761674fca075e9247dbe36e9bd710fap@chr16:19673341..19673350, -
7.58e-62FFCP PHASE1:Mm9::chr6:72260761..72260774,-#_6761674fca075e9247dbe36e9bd710fap@chr6:72260761..72260774, -
7.58e-62FFCP PHASE1:Mm9::chr9:14522825..14522837,-#_6761674fca075e9247dbe36e9bd710fap3@Piwil4
7.58e-62FFCP PHASE1:Mm9::chr9:110959404..110959419,-#_6761674fca075e9247dbe36e9bd710fap9@Ccrl2
7.58e-62FFCP PHASE2:Mm9::chr6:72264657..72264693,-#_6761674fca075e9247dbe36e9bd710fap@chr6:72264657..72264693, -
7.58e-62FFCP PHASE1:Mm9::chr6:72264657..72264693,-#_6761674fca075e9247dbe36e9bd710fap@chr6:72264657..72264693, -
7.58e-62FFCP PHASE1:Mm9::chr14:41951096..41951112,+#_6761674fca075e9247dbe36e9bd710fap@chr14:41951096..41951112, +
7.58e-62FFCP PHASE2:Mm9::chr5:28785382..28785394,-#_6761674fca075e9247dbe36e9bd710fap@chr5:28785382..28785394, -
7.58e-62FFCP PHASE2:Mm9::chr6:72259749..72259765,+#_6761674fca075e9247dbe36e9bd710fap@chr6:72259749..72259765, +
7.58e-62FFCP PHASE2:Mm9::chr6:72260761..72260774,-#_6761674fca075e9247dbe36e9bd710fap@chr6:72260761..72260774, -