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UBERON:0000065

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Name:respiratory tract
Namespace:FANTOM
Definition:"anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [UBERON:cjm]
Xrefs:
links:

EHDAA2:0001606
EHDAA:1568
EHDAA:2219
EMAPA:16737
MESH:A.04
OpenCyc:Mx4rvvM--pwpEbGdrcN5Y29ycA
SCTID:361110005

VHOG:0000393

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0001005(respiratory airway),UBERON:0004119(endoderm-derived structure)
develops_from:UBERON:0007026(primitive gut),UBERON:0008947(respiratory primordium)
part_of:UBERON:0001004(respiratory system)



Children

part of:UBERON:0000072 (segment of respiratory tract),UBERON:0000117 (respiratory tube),UBERON:0001737 (larynx),CL:0002368 (respiratory epithelial cell),UBERON:0004802 (respiratory tract epithelium)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000065 (respiratory tract), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.27e-40FFCP PHASE1:Mm9::chr2:26212358..26212425,-#_0225589fa37d78424796a3e1d9eee75ap@chr2:26212358..26212425, -
1.27e-40FFCP PHASE2:Mm9::chr2:26212358..26212425,-#_0225589fa37d78424796a3e1d9eee75ap@chr2:26212358..26212425, -
4.01e-37FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_757fde99c9d877af44b6f2657ebe2109p4@uc009bpa.1
4.01e-37FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_757fde99c9d877af44b6f2657ebe2109p4@uc009bpa.1
6.88e-37FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_d35526877e60316eb714ab496ce28cadp8@uc009bpa.1
6.88e-37FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_d35526877e60316eb714ab496ce28cadp8@uc009bpa.1
1.84e-35FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_a7018805ad22d379ec34124d9bcd80f7p1@ENSMUST00000103288, p1@uc009bpl.1
1.84e-35FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_a7018805ad22d379ec34124d9bcd80f7p1@ENSMUST00000103288, p1@uc009bpl.1
2.88e-35FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_a2ac2e8d2eb2e7762c9c7f4ff6f1cb47p5@Tcf7
2.88e-35FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_a2ac2e8d2eb2e7762c9c7f4ff6f1cb47p5@Tcf7
6.17e-35FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_79fe887cf110986e31772323d3cc8ed6p@chr12:108361918..108361930, -
6.17e-35FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_79fe887cf110986e31772323d3cc8ed6p@chr6:41491752..41491776, -
6.17e-35FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_79fe887cf110986e31772323d3cc8ed6p@chr6:41491752..41491776, -
6.17e-35FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_79fe887cf110986e31772323d3cc8ed6p@chr12:108361918..108361930, -
7.27e-35FFCP PHASE1:Mm9::chr6:33991787..33991793,-#_94f04d723911a86521a248f2c3d0fd90p@chr6:33991787..33991793, -
7.27e-35FFCP PHASE2:Mm9::chr6:33991787..33991793,-#_94f04d723911a86521a248f2c3d0fd90p@chr6:33991787..33991793, -
5.9e-34FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_5d4e6f12a190a89fc229ef1fe93d6bbcp2@ENSMUST00000103283
5.9e-34FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_5d4e6f12a190a89fc229ef1fe93d6bbcp2@ENSMUST00000103283
5.93e-34FFCP PHASE1:Hg19::chr2:234590530..234590553,+#_7ed0399b8bf25876d4dbb1f560d5eefbp1@UGT1A7
5.93e-34FFCP PHASE2:Hg19::chr2:234590530..234590553,+#_7ed0399b8bf25876d4dbb1f560d5eefbp1@UGT1A7
6.41e-34FFCP PHASE1:Hg19::chr17:19651668..19651682,-#_ec72253c8dc8e80f112fad940fbfd0dbp2@ALDH3A1
6.41e-34FFCP PHASE2:Hg19::chr17:19651668..19651682,-#_ec72253c8dc8e80f112fad940fbfd0dbp2@ALDH3A1
6.71e-34FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_216f0dbf4aba502b0b1c4c808523d1aap1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
6.71e-34FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_216f0dbf4aba502b0b1c4c808523d1aap1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
2.01e-33FFCP PHASE1:Mm9::chr7:25692688..25692751,+#_1172f61d5bb29f290b7bc335dd5863ecp5@Arhgef1
2.01e-33FFCP PHASE2:Mm9::chr7:25692688..25692751,+#_1172f61d5bb29f290b7bc335dd5863ecp5@Arhgef1
2.39e-33FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_47760f89575d92dded6f4b1041cd5bfbp@chr6:41494001..41494028, +
2.39e-33FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_47760f89575d92dded6f4b1041cd5bfbp@chr6:41494001..41494028, +
3.07e-33FFCP PHASE2:Mm9::chr12:74842928..74842966,+#_a94d5051d441cda95224ed3263146d03p@chr12:74842928..74842966, +
3.07e-33FFCP PHASE1:Mm9::chr12:74842928..74842966,+#_a94d5051d441cda95224ed3263146d03p@chr12:74842928..74842966, +
3.11e-33FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_f700f555f7aab2ad0ef7b35ad6503c48p@chr9:44807434..44807445, -
3.11e-33FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_f700f555f7aab2ad0ef7b35ad6503c48p@chr9:44807434..44807445, -
3.34e-33FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_d4349235969f8c8f9e0babe1aa5b19b0p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
3.34e-33FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_d4349235969f8c8f9e0babe1aa5b19b0p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
3.92e-33FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_d342e891598ef97108db1cbb7f7d0c62p1@ENSMUST00000103298, p1@uc009bpy.1
3.92e-33FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_d342e891598ef97108db1cbb7f7d0c62p1@ENSMUST00000103298, p1@uc009bpy.1
4.06e-33FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_4c37b65701242cad00e994d62ba95f65p11@Prkcq
4.06e-33FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_4c37b65701242cad00e994d62ba95f65p11@Prkcq
5.05e-33FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_b7e0277977d563cbc6bb34b46dcf5816p@chr14:54791784..54791787, +
5.05e-33FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_b7e0277977d563cbc6bb34b46dcf5816p@chr14:54791784..54791787, +
5.87e-33FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_a492ff4bb095d9a0311f17e690926ad0p@chr9:44809185..44809215, -
5.87e-33FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_a492ff4bb095d9a0311f17e690926ad0p@chr9:44809185..44809215, -
6.97e-33FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_c730a3f2e2195943a27f809559216c4dp1@ENSMUST00000103263
6.97e-33FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_c730a3f2e2195943a27f809559216c4dp1@ENSMUST00000103263
7.58e-33FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_9f9e1d514384a4a68e02b97b34683df0p@chr9:44793518..44793537, +
7.58e-33FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_9f9e1d514384a4a68e02b97b34683df0p@chr9:44793518..44793537, +
8.76e-33FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_a1c440179f86099668cfce882ac3a889p@chr6:41071548..41071565, +
8.76e-33FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_a1c440179f86099668cfce882ac3a889+, p@chr6:41071548..41071565
9.65e-33FFCP PHASE2:Hg19::chr11:3147806..3147811,-#_ca784f551253420253778b25137c2fedp7@OSBPL5
9.65e-33FFCP PHASE1:Hg19::chr11:3147806..3147811,-#_ca784f551253420253778b25137c2fedp7@OSBPL5
1.01e-32FFCP PHASE1:Mm9::chr6:41483853..41483880,+#_ab52b3acb896c491463bb8a5e099c789p1@ENSMUST00000103284, p1@uc009bpb.1, p1@uc009bpc.1, p1@uc009bpd.1, p1@uc009bpe.1
1.01e-32FFCP PHASE2:Mm9::chr6:41483853..41483880,+#_ab52b3acb896c491463bb8a5e099c789p1@ENSMUST00000103284, p1@uc009bpb.1, p1@uc009bpc.1, p1@uc009bpd.1, p1@uc009bpe.1
1.09e-32FFCP PHASE1:Hg19::chr2:233246932..233246943,+#_7c359682cf90df270a1a0beb4abbc271p6@ALPP
1.09e-32FFCP PHASE1:Hg19::chr8:128241234..128241241,-#_7c359682cf90df270a1a0beb4abbc271p7@uc003ysb.2
1.09e-32FFCP PHASE2:Hg19::chr2:53732986..53732989,-#_7c359682cf90df270a1a0beb4abbc271p@chr2:53732986..53732989, -
1.09e-32FFCP PHASE2:Hg19::chr2:233246932..233246943,+#_7c359682cf90df270a1a0beb4abbc271p6@ALPP
1.09e-32FFCP PHASE2:Hg19::chr17:79098633..79098647,-#_7c359682cf90df270a1a0beb4abbc271p@chr17:79098633..79098647, -
1.09e-32FFCP PHASE2:Hg19::chr16:87869864..87869878,+#_7c359682cf90df270a1a0beb4abbc271p@chr16:87869864..87869878, +
1.09e-32FFCP PHASE2:Hg19::chr2:233244473..233244503,+#_7c359682cf90df270a1a0beb4abbc271p1@AK297894
1.09e-32FFCP PHASE1:Hg19::chr17:79098633..79098647,-#_7c359682cf90df270a1a0beb4abbc271p@chr17:79098633..79098647, -
1.09e-32FFCP PHASE1:Hg19::chr2:233246459..233246472,+#_7c359682cf90df270a1a0beb4abbc271p9@ALPP
1.09e-32FFCP PHASE1:Hg19::chr16:87869864..87869878,+#_7c359682cf90df270a1a0beb4abbc271p@chr16:87869864..87869878, +
1.09e-32FFCP PHASE2:Hg19::chr2:233246459..233246472,+#_7c359682cf90df270a1a0beb4abbc271p9@ALPP
1.09e-32FFCP PHASE2:Hg19::chr8:128241234..128241241,-#_7c359682cf90df270a1a0beb4abbc271p7@uc003ysb.2
1.09e-32FFCP PHASE1:Hg19::chr2:233246793..233246841,-#_7c359682cf90df270a1a0beb4abbc271p1@ENST00000441266
1.09e-32FFCP PHASE1:Hg19::chr2:233244473..233244503,+#_7c359682cf90df270a1a0beb4abbc271p1@AK297894
1.09e-32FFCP PHASE2:Hg19::chr2:233244912..233244922,+#_7c359682cf90df270a1a0beb4abbc271p2@AK297894
1.09e-32FFCP PHASE1:Hg19::chr2:233244912..233244922,+#_7c359682cf90df270a1a0beb4abbc271p2@AK297894
1.09e-32FFCP PHASE2:Hg19::chr2:233246793..233246841,-#_7c359682cf90df270a1a0beb4abbc271p1@ENST00000441266
1.09e-32FFCP PHASE1:Hg19::chr2:53732986..53732989,-#_7c359682cf90df270a1a0beb4abbc271p@chr2:53732986..53732989, -
1.36e-32FFCP PHASE2:Hg19::chr8:128270900..128270912,-#_d04a5900af3661ac046ae6c1fbe3c361p@chr8:128270900..128270912, -
1.36e-32FFCP PHASE1:Hg19::chr8:128270900..128270912,-#_d04a5900af3661ac046ae6c1fbe3c361p@chr8:128270900..128270912, -
1.51e-32FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_65f99dbe8dcedd1c2defe64cae850b43p5@Themis
1.51e-32FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_65f99dbe8dcedd1c2defe64cae850b43p5@Themis
1.65e-32FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_d58fc58bad9f9060ca4d11adc4d5efdcp5@uc009bpa.1
1.65e-32FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_d58fc58bad9f9060ca4d11adc4d5efdcp5@uc009bpa.1
2.0e-32FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_4066de38207d39394e6cd52d44126a9cp2@uc009bnp.1, p2@uc012eki.1
2.0e-32FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_4066de38207d39394e6cd52d44126a9cp2@uc009bnp.1, p2@uc012eki.1
1.12e-31FFCP PHASE2:Mm9::chr6:124838183..124838199,-#_0663b857720e253bfd644745c5f83b40p2@Cd4
1.12e-31FFCP PHASE1:Mm9::chr6:124838183..124838199,-#_0663b857720e253bfd644745c5f83b40p2@Cd4
2.1e-31FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_34324825cc63956ae8cea5b1988c804dp@chr14:61328148..61328173, +
2.1e-31FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_34324825cc63956ae8cea5b1988c804dp@chr14:61328148..61328173, +
2.46e-31FFCP PHASE2:Hg19::chr3:161318448..161318456,+#_140ba304ca67f2179728d82a8e770435p@chr3:161318448..161318456, +
2.46e-31FFCP PHASE1:Hg19::chr3:161318448..161318456,+#_140ba304ca67f2179728d82a8e770435p@chr3:161318448..161318456, +
2.74e-31FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_b0914268992de8baf057edaefe4ebf26p1@uc012ekr.1
2.74e-31FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_b0914268992de8baf057edaefe4ebf26p1@uc012ekr.1
3.12e-31FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_fb2d885d1bfd4a2947eff73b23416cf6p2@1810009J06Rik
3.12e-31FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_fb2d885d1bfd4a2947eff73b23416cf6p2@1810009J06Rik
3.72e-31FFCP PHASE2:Mm9::chr11:52067405..52067434,-#_28f3d7a669795e587c52f87d6948fb56-, p@chr11:52067405..52067434
3.72e-31FFCP PHASE1:Mm9::chr11:52067405..52067434,-#_28f3d7a669795e587c52f87d6948fb56p@chr11:52067405..52067434, -
3.88e-31FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_eb0841da24757e331389733191f2f04bp1@uc012ekk.1
3.88e-31FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_eb0841da24757e331389733191f2f04bp1@uc012ekk.1
4.24e-31FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_eac5aabcaae768eeefdfa6d034443435p1@ENSMUST00000103265
4.24e-31FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_eac5aabcaae768eeefdfa6d034443435p1@ENSMUST00000103265
4.24e-31FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_eac5aabcaae768eeefdfa6d034443435p3@uc009bpo.1, p3@uc009bpp.1
4.24e-31FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_eac5aabcaae768eeefdfa6d034443435p3@uc009bpo.1, p3@uc009bpp.1
4.43e-31FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_6312009f85f5c5b47698d786c68254e9p@chr7:133512043..133512060, -
4.43e-31FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_6312009f85f5c5b47698d786c68254e9p@chr7:133512043..133512060, -
4.75e-31FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_4fe593f1f36b4459e8ed018dba9f316bp2@uc009bpa.1
4.75e-31FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_4fe593f1f36b4459e8ed018dba9f316bp2@uc009bpa.1