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UBERON:0002081

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Name:cardiac atrium
Namespace:FANTOM
Definition:"Cardiac chamber which consists of a wall that surrounds the cavity of an atrium.[FMA]" [FMA:FMA, Wikipedia:Heart_atrium]
Xrefs:
links:

AAO:0010246
BTO:0000903
EFO:0000277
EFO:0000314
EHDAA2:0000154
EHDAA:1265
EMAPA:16688
EV:0100019
FMA:7099
GAID:555
galen:Atrium
MA:0000073
MAT:0000496
MESH:A.07.541.358
ncithesaurus:Cardiac_Atrium
SCTID:261405004
TAO:0000471
VHOG:0000175

ZFA:0000471
Synonyms: "atria" EXACT PLURAL []
"atrial tissue" RELATED [BTO:0000903]
"atrium" EXACT [ZFA:0000471]
"atrium of heart" EXACT []
"Cardiac atria" EXACT PLURAL []
"cardiac atria" EXACT PLURAL []
"heart atrium" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_7099-MA_0000073
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004151(cardiac chamber)
develops_from:UBERON:0010227(future cardiac atrium)



Children

is a:UBERON:0002078 (right cardiac atrium),UBERON:0002079 (left cardiac atrium)
part of:UBERON:0005946 (outflow tract of atrium)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002081 (cardiac atrium), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
8.99e-131FFCP PHASE2:Hg19::chr1:11905799..11905806,-#_2b1dcff6e0a3a0c561c7bf35a52911dap@chr1:11905799..11905806, -
8.99e-131FFCP PHASE2:Hg19::chr1:11907265..11907271,-#_2b1dcff6e0a3a0c561c7bf35a52911dap9@NPPA
8.99e-131FFCP PHASE1:Hg19::chr1:11905799..11905806,-#_2b1dcff6e0a3a0c561c7bf35a52911dap@chr1:11905799..11905806, -
8.99e-131FFCP PHASE1:Hg19::chr1:11907265..11907271,-#_2b1dcff6e0a3a0c561c7bf35a52911dap9@NPPA
9.38e-99FFCP PHASE2:Hg19::chr1:11905830..11905839,-#_32b2f753d39295e6ae32c2fa6bbc4ea4p@chr1:11905830..11905839, -
9.38e-99FFCP PHASE2:Hg19::chr7:44179972..44179982,-#_32b2f753d39295e6ae32c2fa6bbc4ea4p2@MYL7
9.38e-99FFCP PHASE1:Hg19::chr7:44179972..44179982,-#_32b2f753d39295e6ae32c2fa6bbc4ea4p2@MYL7
9.38e-99FFCP PHASE1:Hg19::chr1:11905830..11905839,-#_32b2f753d39295e6ae32c2fa6bbc4ea4p@chr1:11905830..11905839, -
1.55e-98FFCP PHASE2:Hg19::chr15:86272097..86272099,+#_f9c851a3d8da112289a57e14b3a86606p@chr15:86272097..86272099, +
1.55e-98FFCP PHASE2:Hg19::chr10:92678409..92678410,-#_f9c851a3d8da112289a57e14b3a86606-, p@chr10:92678409..92678410
1.55e-98FFCP PHASE2:Hg19::chr5:99390735..99390743,-#_f9c851a3d8da112289a57e14b3a86606p@chr5:99390735..99390743, -
1.55e-98FFCP PHASE1:Hg19::chr15:86272097..86272099,+#_f9c851a3d8da112289a57e14b3a86606p@chr15:86272097..86272099, +
1.55e-98FFCP PHASE1:Hg19::chr1:11907474..11907481,-#_f9c851a3d8da112289a57e14b3a86606p10@NPPA
1.55e-98FFCP PHASE1:Hg19::chr12:4735761..4735787,-#_f9c851a3d8da112289a57e14b3a86606p@chr12:4735761..4735787, -
1.55e-98FFCP PHASE1:Hg19::chr17:79385898..79385905,-#_f9c851a3d8da112289a57e14b3a86606p@chr17:79385898..79385905, -
1.55e-98FFCP PHASE2:Hg19::chr17:79385898..79385905,-#_f9c851a3d8da112289a57e14b3a86606p@chr17:79385898..79385905, -
1.55e-98FFCP PHASE2:Hg19::chr12:4735761..4735787,-#_f9c851a3d8da112289a57e14b3a86606p@chr12:4735761..4735787, -
1.55e-98FFCP PHASE1:Hg19::chr10:92678409..92678410,-#_f9c851a3d8da112289a57e14b3a86606p@chr10:92678409..92678410, -
1.55e-98FFCP PHASE2:Hg19::chr7:44180643..44180652,-#_f9c851a3d8da112289a57e14b3a86606p3@MYL7
1.55e-98FFCP PHASE2:Hg19::chr1:43676416..43676417,-#_f9c851a3d8da112289a57e14b3a86606p@chr1:43676416..43676417, -
1.55e-98FFCP PHASE2:Hg19::chr1:11907474..11907481,-#_f9c851a3d8da112289a57e14b3a86606p10@NPPA
1.55e-98FFCP PHASE1:Hg19::chr7:44180643..44180652,-#_f9c851a3d8da112289a57e14b3a86606p3@MYL7
1.55e-98FFCP PHASE1:Hg19::chr5:99390735..99390743,-#_f9c851a3d8da112289a57e14b3a86606p@chr5:99390735..99390743, -
1.55e-98FFCP PHASE1:Hg19::chr1:43676416..43676417,-#_f9c851a3d8da112289a57e14b3a86606p@chr1:43676416..43676417, -
2.56e-98FFCP PHASE1:Hg19::chr7:44178491..44178498,-#_46aea807006a58a53df862d9da109837p@chr7:44178491..44178498, -
2.56e-98FFCP PHASE2:Hg19::chr7:44178491..44178498,-#_46aea807006a58a53df862d9da109837p@chr7:44178491..44178498, -
4.22e-98FFCP PHASE2:Hg19::chr12:114886577..114886589,-#_01636d5581514cbfcb7278186a3ed408-, p@chr12:114886577..114886589
4.22e-98FFCP PHASE1:Hg19::chr12:114886577..114886589,-#_01636d5581514cbfcb7278186a3ed408p@chr12:114886577..114886589, -
1.56e-79FFCP PHASE2:Hg19::chr10:92725775..92725780,+#_2b64b51266786b39dbb24a542400a39dp@chr10:92725775..92725780, +
1.56e-79FFCP PHASE1:Hg19::chr10:92725775..92725780,+#_2b64b51266786b39dbb24a542400a39dp@chr10:92725775..92725780, +
3.49e-79FFCP PHASE2:Hg19::chr15:86266279..86266292,+#_81ca87df34999fe7325f42c965dae553p@chr15:86266279..86266292, +
3.49e-79FFCP PHASE1:Hg19::chr15:86266279..86266292,+#_81ca87df34999fe7325f42c965dae553p@chr15:86266279..86266292, +
1.16e-78FFCP PHASE2:Hg19::chr2:179585314..179585321,-#_668268131ff8e7b5ca7b1dbd77b46337p@chr2:179585314..179585321, -
1.16e-78FFCP PHASE1:Hg19::chr2:179585314..179585321,-#_668268131ff8e7b5ca7b1dbd77b46337-, p@chr2:179585314..179585321
1.45e-66FFCP PHASE1:Hg19::chr12:114886372..114886399,-#_5c902b50cc464f798c98ac63b263dfa6p@chr12:114886372..114886399, -
1.45e-66FFCP PHASE2:Hg19::chr12:114886372..114886399,-#_5c902b50cc464f798c98ac63b263dfa6p@chr12:114886372..114886399, -
2.03e-66FFCP PHASE2:Hg19::chr13:111935498..111935509,+#_e706ac816e8054303479d3e4feec035fp35@ARHGEF7
2.03e-66FFCP PHASE1:Hg19::chr13:111935498..111935509,+#_e706ac816e8054303479d3e4feec035fp35@ARHGEF7
2.84e-66FFCP PHASE1:Hg19::chr14:23854202..23854211,-#_2045b0aa06c36bb040b7f93d3fcb8866p@chr14:23854202..23854211, -
2.84e-66FFCP PHASE2:Hg19::chr14:23854202..23854211,-#_2045b0aa06c36bb040b7f93d3fcb8866p@chr14:23854202..23854211, -
3.96e-66FFCP PHASE1:Hg19::chrX:78619044..78619053,-#_6ec739f918aece336edc93c58d1b3559p10@ITM2A
3.96e-66FFCP PHASE2:Hg19::chrX:78619044..78619053,-#_6ec739f918aece336edc93c58d1b3559p10@ITM2A
5.53e-66FFCP PHASE1:Hg19::chr2:179396981..179396986,-#_0e90eb70c585097d2962fb698407a717p147@TTN
5.53e-66FFCP PHASE2:Hg19::chr2:179396981..179396986,-#_0e90eb70c585097d2962fb698407a717p147@TTN
1.51e-57FFCP PHASE2:Hg19::chr1:78408547..78408558,+#_dcc10b83d1a1f10a70f4fe1de134c47bp@chr1:78408547..78408558, +
1.51e-57FFCP PHASE1:Hg19::chr1:78408547..78408558,+#_dcc10b83d1a1f10a70f4fe1de134c47bp@chr1:78408547..78408558, +
2.69e-57FFCP PHASE2:Hg19::chr1:11907940..11907947,-#_a5b841e03080c266dfa8ea7e0e8d9e8bp2@NPPA
2.69e-57FFCP PHASE1:Hg19::chr1:11907940..11907947,-#_a5b841e03080c266dfa8ea7e0e8d9e8bp2@NPPA
3.58e-57FFCP PHASE1:Hg19::chr1:11907441..11907453,-#_d8d46845d9d3e7cd34a39249349209a0p3@NPPA
3.58e-57FFCP PHASE2:Hg19::chr1:11907441..11907453,-#_d8d46845d9d3e7cd34a39249349209a0p3@NPPA
4.77e-57FFCP PHASE2:Hg19::chr2:179396338..179396348,-#_f73b13ee40cce04138598616c44794dcp@chr2:179396338..179396348, -
4.77e-57FFCP PHASE1:Hg19::chr2:179396338..179396348,-#_f73b13ee40cce04138598616c44794dcp@chr2:179396338..179396348, -
6.36e-57FFCP PHASE1:Hg19::chr1:12520398..12520406,+#_251e74ba36c0b54e220a36dd91fd4321p@chr1:12520398..12520406, +
6.36e-57FFCP PHASE2:Hg19::chr1:12520398..12520406,+#_251e74ba36c0b54e220a36dd91fd4321p@chr1:12520398..12520406, +
8.47e-57FFCP PHASE1:Hg19::chrX:112324334..112324339,-#_ebb51c7f54edd87afd0950db5c701c6ap@chrX:112324334..112324339, -
8.47e-57FFCP PHASE2:Hg19::chrX:112324334..112324339,-#_ebb51c7f54edd87afd0950db5c701c6ap@chrX:112324334..112324339, -
1.88e-50FFCP PHASE2:Hg19::chr2:179504505..179504514,-#_56f8e70c1b377f1854ac90fe635e779bp@chr2:179504505..179504514, -
1.88e-50FFCP PHASE1:Hg19::chr1:163112604..163112616,-#_56f8e70c1b377f1854ac90fe635e779bp@chr1:163112604..163112616, -
1.88e-50FFCP PHASE1:Hg19::chr4:95508126..95508142,+#_56f8e70c1b377f1854ac90fe635e779bp@chr4:95508126..95508142, +
1.88e-50FFCP PHASE1:Hg19::chr2:179504505..179504514,-#_56f8e70c1b377f1854ac90fe635e779bp@chr2:179504505..179504514, -
1.88e-50FFCP PHASE2:Hg19::chr1:163112604..163112616,-#_56f8e70c1b377f1854ac90fe635e779bp@chr1:163112604..163112616, -
1.88e-50FFCP PHASE2:Hg19::chr4:95508126..95508142,+#_56f8e70c1b377f1854ac90fe635e779bp@chr4:95508126..95508142, +
2.74e-50FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_14b54e6df25b816253a74468f5ee1b03p@chr2:179656442..179656451, -
2.74e-50FFCP PHASE1:Hg19::chr1:11907318..11907327,-#_14b54e6df25b816253a74468f5ee1b03p7@NPPA
2.74e-50FFCP PHASE1:Hg19::chr12:94730118..94730123,-#_14b54e6df25b816253a74468f5ee1b03p13@CCDC41
2.74e-50FFCP PHASE2:Hg19::chr1:11907415..11907418,-#_14b54e6df25b816253a74468f5ee1b03p15@NPPA
2.74e-50FFCP PHASE2:Hg19::chr15:26640258..26640266,+#_14b54e6df25b816253a74468f5ee1b03p4@ENST00000451579
2.74e-50FFCP PHASE1:Hg19::chr15:26640282..26640290,+#_14b54e6df25b816253a74468f5ee1b03p5@ENST00000451579
2.74e-50FFCP PHASE1:Hg19::chr7:97501400..97501407,-#_14b54e6df25b816253a74468f5ee1b03p16@ASNS
2.74e-50FFCP PHASE1:Hg19::chr4:8321842..8321846,+#_14b54e6df25b816253a74468f5ee1b03p5@ENST00000509453
2.74e-50FFCP PHASE2:Hg19::chr1:11907440..11907450,+#_14b54e6df25b816253a74468f5ee1b03p@chr1:11907440..11907450, +
2.74e-50FFCP PHASE2:Hg19::chr15:26640282..26640290,+#_14b54e6df25b816253a74468f5ee1b03p5@ENST00000451579
2.74e-50FFCP PHASE2:Hg19::chr4:8321842..8321846,+#_14b54e6df25b816253a74468f5ee1b03p5@ENST00000509453
2.74e-50FFCP PHASE2:Hg19::chr1:11907318..11907327,-#_14b54e6df25b816253a74468f5ee1b03p7@NPPA
2.74e-50FFCP PHASE1:Hg19::chr1:11907408..11907415,+#_14b54e6df25b816253a74468f5ee1b03p@chr1:11907408..11907415, +
2.74e-50FFCP PHASE1:Hg19::chr1:11906044..11906050,-#_14b54e6df25b816253a74468f5ee1b03p@chr1:11906044..11906050, -
2.74e-50FFCP PHASE2:Hg19::chr7:97501400..97501407,-#_14b54e6df25b816253a74468f5ee1b03p16@ASNS
2.74e-50FFCP PHASE2:Hg19::chr12:70004523..70004545,-#_14b54e6df25b816253a74468f5ee1b03p3@LRRC10
2.74e-50FFCP PHASE1:Hg19::chr1:11907415..11907418,-#_14b54e6df25b816253a74468f5ee1b03p15@NPPA
2.74e-50FFCP PHASE2:Hg19::chr1:109849679..109849688,-#_14b54e6df25b816253a74468f5ee1b03p3@MYBPHL
2.74e-50FFCP PHASE2:Hg19::chr12:94730118..94730123,-#_14b54e6df25b816253a74468f5ee1b03p13@CCDC41
2.74e-50FFCP PHASE1:Hg19::chr12:70004523..70004545,-#_14b54e6df25b816253a74468f5ee1b03p3@LRRC10
2.74e-50FFCP PHASE1:Hg19::chr1:109849679..109849688,-#_14b54e6df25b816253a74468f5ee1b03p3@MYBPHL
2.74e-50FFCP PHASE2:Hg19::chr1:11907408..11907415,+#_14b54e6df25b816253a74468f5ee1b03p@chr1:11907408..11907415, +
2.74e-50FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_14b54e6df25b816253a74468f5ee1b03p@chr2:179656442..179656451, -
2.74e-50FFCP PHASE1:Hg19::chr15:26640258..26640266,+#_14b54e6df25b816253a74468f5ee1b03p4@ENST00000451579
2.74e-50FFCP PHASE1:Hg19::chr1:11907440..11907450,+#_14b54e6df25b816253a74468f5ee1b03p@chr1:11907440..11907450, +
2.74e-50FFCP PHASE2:Hg19::chr1:11906044..11906050,-#_14b54e6df25b816253a74468f5ee1b03p@chr1:11906044..11906050, -
4.0e-50FFCP PHASE1:Hg19::chr5:123739302..123739319,-#_d2d137ea6c35cf2b408c24c7dc3f992ap@chr5:123739302..123739319, -
4.0e-50FFCP PHASE1:Hg19::chr20:44035965..44035976,+#_d2d137ea6c35cf2b408c24c7dc3f992ap30@DBNDD2
4.0e-50FFCP PHASE2:Hg19::chr20:44035965..44035976,+#_d2d137ea6c35cf2b408c24c7dc3f992ap30@DBNDD2
4.0e-50FFCP PHASE1:Hg19::chr14:23863442..23863452,-#_d2d137ea6c35cf2b408c24c7dc3f992ap@chr14:23863442..23863452, -
4.0e-50FFCP PHASE2:Hg19::chr14:23863442..23863452,-#_d2d137ea6c35cf2b408c24c7dc3f992ap@chr14:23863442..23863452, -
4.0e-50FFCP PHASE2:Hg19::chr5:123739302..123739319,-#_d2d137ea6c35cf2b408c24c7dc3f992ap@chr5:123739302..123739319, -
4.52e-50FFCP PHASE2:Hg19::chr14:23862118..23862122,-#_83f469aaacaa8c3bf98c43e6be636518p18@MYH6
4.52e-50FFCP PHASE1:Hg19::chr6:70647888..70647891,+#_83f469aaacaa8c3bf98c43e6be636518p@chr6:70647888..70647891, +
4.52e-50FFCP PHASE2:Hg19::chr18:28807557..28807562,-#_83f469aaacaa8c3bf98c43e6be636518p@chr18:28807557..28807562, -
4.52e-50FFCP PHASE1:Hg19::chr2:50059270..50059276,-#_83f469aaacaa8c3bf98c43e6be636518p@chr2:50059270..50059276, -
4.52e-50FFCP PHASE2:Hg19::chr11:45274072..45274078,-#_83f469aaacaa8c3bf98c43e6be636518p@chr11:45274072..45274078, -
4.52e-50FFCP PHASE1:Hg19::chr8:24530708..24530710,+#_83f469aaacaa8c3bf98c43e6be636518p@chr8:24530708..24530710, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "One of four heart chambers.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "One of two chambers of the heart which receive blood from the veins and forces it by muscular contration to the ventricle.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.