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UBERON:0003056

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Name:pre-chordal neural plate
Namespace:FANTOM
Definition:"The portion of neural plate anterior to the mid-hindbrain junction." [XB:curator]
Xrefs:
links:

AAO:0011084
TAO:0007016
VHOG:0001200
XAO:0000045

ZFA:0007016
Synonyms: "anterior neural plate" RELATED []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:XAO_0000045-ZFA_0007016

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0005291(embryonic tissue)
part_of:UBERON:0003075(neural plate)



Children

develops from:UBERON:0003071 (eye primordium),UBERON:0003080 (anterior neural tube)
part of:UBERON:0003071 (eye primordium)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003056 (pre-chordal neural plate), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.29e-94FFCP PHASE1:Hg19::chr11:31839488..31839515,-#_20bdebb295e78d2d1523406849e2a515p3@PAX6
5.29e-94FFCP PHASE2:Hg19::chr11:31839488..31839515,-#_20bdebb295e78d2d1523406849e2a515p3@PAX6
7.01e-94FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_1e56a924019091ac15f91de095ab09f4p1@NR2E1
7.01e-94FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_1e56a924019091ac15f91de095ab09f4p1@NR2E1
5.34e-93FFCP PHASE2:Hg19::chr5:89977201..89977236,+#_b73139ac7844d220f17c02c651957a65p@chr5:89977201..89977236, +
5.34e-93FFCP PHASE1:Hg19::chr5:89977201..89977236,+#_b73139ac7844d220f17c02c651957a65p@chr5:89977201..89977236, +
6.98e-88FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_f15e4000ce79f40dc8c558f504aca029p5@ST8SIA3
6.98e-88FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_f15e4000ce79f40dc8c558f504aca029p5@ST8SIA3
8.41e-86FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_fd518c617ac6e7d2fcfa8831d5cbee73p5@PHACTR1
8.41e-86FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_fd518c617ac6e7d2fcfa8831d5cbee73p5@PHACTR1
7.05e-85FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_5f6f9ea38cbc740eb060417ed1b0bd6fp3@CTNND2
7.05e-85FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_5f6f9ea38cbc740eb060417ed1b0bd6fp3@CTNND2
1.35e-84FFCP PHASE2:Hg19::chr10:104178839..104178855,-#_b9ac7047871f925b462c76f3c13d07d2p6@PSD
1.35e-84FFCP PHASE1:Hg19::chr10:104178839..104178855,-#_b9ac7047871f925b462c76f3c13d07d2p6@PSD
1.37e-84FFCP PHASE2:Hg19::chr6:12716992..12717005,+#_8d8e36cf030abcb64442a6fb5bb2d29ep3@PHACTR1
1.37e-84FFCP PHASE1:Hg19::chr6:12716992..12717005,+#_8d8e36cf030abcb64442a6fb5bb2d29ep3@PHACTR1
4.78e-83FFCP PHASE2:Hg19::chr20:61806320..61806344,+#_9ae421e39351816ec6cb03d7c154aafbp@chr20:61806320..61806344, +
4.78e-83FFCP PHASE1:Hg19::chr20:61806320..61806344,+#_9ae421e39351816ec6cb03d7c154aafbp@chr20:61806320..61806344, +
7.13e-83FFCP PHASE2:Hg19::chr8:18541544..18541592,-#_6dee95eba72e031c600ea4a5c9f6b773p2@PSD3
7.13e-83FFCP PHASE1:Hg19::chr8:18541544..18541592,-#_6dee95eba72e031c600ea4a5c9f6b773p2@PSD3
7.19e-83FFCP PHASE1:Hg19::chrX:13835472..13835483,-#_703d64242be40c631757a2c407203db4p10@GPM6B
7.19e-83FFCP PHASE2:Hg19::chrX:13835472..13835483,-#_703d64242be40c631757a2c407203db4p10@GPM6B
1.73e-82FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_0bed3e7165d1c4b71321c3435bc8c4f1p6@GPM6B
1.73e-82FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_0bed3e7165d1c4b71321c3435bc8c4f1p6@GPM6B
2.68e-82FFCP PHASE1:Hg19::chr4:165305086..165305179,-#_fd0494280b0d8e3857ac54abb59ebf36p2@MARCH1
2.68e-82FFCP PHASE2:Hg19::chr4:165305086..165305179,-#_fd0494280b0d8e3857ac54abb59ebf36p2@MARCH1
1.94e-81FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_aed8a47fce010c48cf54ca1a37648d0fp2@FXYD7
1.94e-81FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_aed8a47fce010c48cf54ca1a37648d0fp2@FXYD7
3.84e-81FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_37ac19ff73fdc53dce2ac9f4a4ba301ap5@MKL2
3.84e-81FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_37ac19ff73fdc53dce2ac9f4a4ba301ap5@MKL2
5.89e-81FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_778fc0fc08ef950aeccefc584bc6ff44p9@GPM6B
5.89e-81FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_778fc0fc08ef950aeccefc584bc6ff44p9@GPM6B
1.07e-80FFCP PHASE1:Hg19::chr1:177134053..177134069,-#_26d324ed94d5c398107f7154a2761f1dp4@ASTN1
1.07e-80FFCP PHASE2:Hg19::chr1:177134053..177134069,-#_26d324ed94d5c398107f7154a2761f1dp4@ASTN1
6.2e-79FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_c5dea91f6317bf3567e27b1bdd4d032cp2@LMTK3
6.2e-79FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_c5dea91f6317bf3567e27b1bdd4d032cp2@LMTK3
2.83e-78FFCP PHASE1:Hg19::chr19:39006729..39006756,+#_2a2bb6d193d100a28b7c49e31bba2681p@chr19:39006729..39006756, +
2.83e-78FFCP PHASE2:Hg19::chr19:39006729..39006756,+#_2a2bb6d193d100a28b7c49e31bba2681p@chr19:39006729..39006756, +
4.61e-78FFCP PHASE2:Hg19::chr6:97753454..97753523,+#_c04ada59ac84c96ccc448d5fe223f7f7p1@uc003ppd.1
4.61e-78FFCP PHASE1:Hg19::chr6:97753454..97753523,+#_c04ada59ac84c96ccc448d5fe223f7f7p1@uc003ppd.1
7.82e-78FFCP PHASE1:Hg19::chr19:30016395..30016433,+#_2f494b1d3194ecb5b50f1364e1fdc382p@chr19:30016395..30016433, +
7.82e-78FFCP PHASE2:Hg19::chr19:30016395..30016433,+#_2f494b1d3194ecb5b50f1364e1fdc382+, p@chr19:30016395..30016433
7.99e-78FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_ee83ae304fdaa1cf7e56ac54443fd286p@chr4:6514469..6514483, -
7.99e-78FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_ee83ae304fdaa1cf7e56ac54443fd286p@chr4:6514469..6514483, -
9.92e-78FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_177525fecdcdf4f8fdeb8c5eca51a0c9p5@OPCML
9.92e-78FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_177525fecdcdf4f8fdeb8c5eca51a0c9p5@OPCML
1.06e-77FFCP PHASE2:Hg19::chr10:62149542..62149590,-#_a8f4028327a7ddc357f8395e47b0a49dp1@ANK3
1.06e-77FFCP PHASE1:Hg19::chr10:62149542..62149590,-#_a8f4028327a7ddc357f8395e47b0a49dp1@ANK3
1.12e-77FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_1d7388654be1e344f96f0807c057be9ap3@GRIN2B
1.12e-77FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_1d7388654be1e344f96f0807c057be9ap3@GRIN2B
3.17e-77FFCP PHASE1:Hg19::chr11:62475005..62475041,-#_6b0ca751a2da7b85503e09460992f65bp6@BSCL2
3.17e-77FFCP PHASE2:Hg19::chr11:62475005..62475041,-#_6b0ca751a2da7b85503e09460992f65bp6@BSCL2
4.8e-77FFCP PHASE2:Hg19::chr18:59000657..59000672,+#_dcd1ea3d0454820553c0da3e175ddfd1p1@CDH20
4.8e-77FFCP PHASE1:Hg19::chr18:59000657..59000672,+#_dcd1ea3d0454820553c0da3e175ddfd1p1@CDH20
4.84e-77FFCP PHASE1:Hg19::chr4:21792588..21792593,-#_bedca31051a9a1827bc0aa496c846562p@chr4:21792588..21792593, -
4.84e-77FFCP PHASE2:Hg19::chr4:21792588..21792593,-#_bedca31051a9a1827bc0aa496c846562p@chr4:21792588..21792593, -
5.21e-77FFCP PHASE1:Hg19::chr1:35391249..35391269,-#_be0cedde9525106e8bb28e98192f9933p4@DLGAP3
5.21e-77FFCP PHASE2:Hg19::chr1:35391249..35391269,-#_be0cedde9525106e8bb28e98192f9933p4@DLGAP3
7.45e-77FFCP PHASE2:Hg19::chr7:154002341..154002355,+#_b9968d81d9342708654349ea70e47a2ep6@DPP6
7.45e-77FFCP PHASE1:Hg19::chr7:154002341..154002355,+#_b9968d81d9342708654349ea70e47a2ep6@DPP6
8.33e-77FFCP PHASE1:Hg19::chr7:154002369..154002398,+#_99416026f6c736c2b202189d9845c948p4@DPP6
8.33e-77FFCP PHASE2:Hg19::chr7:154002369..154002398,+#_99416026f6c736c2b202189d9845c948p4@DPP6
1.48e-76FFCP PHASE2:Hg19::chr6:12717801..12717817,+#_6ece1b19536ec13dcfa4af17c70da159p8@PHACTR1
1.48e-76FFCP PHASE1:Hg19::chr6:12717801..12717817,+#_6ece1b19536ec13dcfa4af17c70da159p8@PHACTR1
1.66e-76FFCP PHASE1:Hg19::chr6:12717819..12717851,+#_2202735e26e914b6f7cbf9611941d1aep4@PHACTR1
1.66e-76FFCP PHASE2:Hg19::chr6:12717819..12717851,+#_2202735e26e914b6f7cbf9611941d1aep4@PHACTR1
1.7e-76FFCP PHASE2:Hg19::chr8:104831416..104831427,+#_23ede77bd8ad33433c00188b770e899fp8@RIMS2
1.7e-76FFCP PHASE1:Hg19::chr8:104831416..104831427,+#_23ede77bd8ad33433c00188b770e899fp8@RIMS2
1.84e-76FFCP PHASE1:Hg19::chr6:69942657..69942671,+#_5920093ba37f0c66efea414602e790d3p@chr6:69942657..69942671, +
1.84e-76FFCP PHASE2:Hg19::chr6:69942657..69942671,+#_5920093ba37f0c66efea414602e790d3p@chr6:69942657..69942671, +
1.89e-76FFCP PHASE2:Hg19::chr10:10504464..10504475,+#_673a187b9bc78863b88062bd402c749ap@chr10:10504464..10504475, +
1.89e-76FFCP PHASE1:Hg19::chr10:10504464..10504475,+#_673a187b9bc78863b88062bd402c749ap@chr10:10504464..10504475, +
2.63e-76FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_b53c750fc40bd97ae7685897d9d01cb3p8@LRRC7
2.63e-76FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_b53c750fc40bd97ae7685897d9d01cb3p8@LRRC7
2.68e-76FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_aaae87610dab2ca7eb9501da883aa0dep1@ENST00000412957
2.68e-76FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_aaae87610dab2ca7eb9501da883aa0dep1@ENST00000412957
4.52e-76FFCP PHASE1:Hg19::chr7:111424462..111424496,-#_e5d86f354e5097c23ba0db2591c3a498p3@DOCK4
4.52e-76FFCP PHASE2:Hg19::chr7:111424462..111424496,-#_e5d86f354e5097c23ba0db2591c3a498p3@DOCK4
4.91e-76FFCP PHASE1:Hg19::chr5:89936560..89936586,+#_5ec0761f10b9928b32ea4b70ec8315e4p3@GPR98
4.91e-76FFCP PHASE2:Hg19::chr5:89936560..89936586,+#_5ec0761f10b9928b32ea4b70ec8315e4p3@GPR98
6.45e-76FFCP PHASE2:Hg19::chr1:197237352..197237414,+#_8d03e8b3b07296bd1107db14836fcd93p2@CRB1
6.45e-76FFCP PHASE1:Hg19::chr1:197237352..197237414,+#_8d03e8b3b07296bd1107db14836fcd93p2@CRB1
7.05e-76FFCP PHASE1:Hg19::chr1:35391417..35391476,-#_51089a543a6f08bf5bcf05434547e11fp2@DLGAP3
7.05e-76FFCP PHASE2:Hg19::chr1:35391417..35391476,-#_51089a543a6f08bf5bcf05434547e11fp2@DLGAP3
1.25e-75FFCP PHASE2:Hg19::chr19:35631736..35631759,+#_d5f1acb7dd8455ae085c20a1aa144b9ap@chr19:35631736..35631759, +
1.25e-75FFCP PHASE1:Hg19::chr19:35631736..35631759,+#_d5f1acb7dd8455ae085c20a1aa144b9ap@chr19:35631736..35631759, +
1.68e-75FFCP PHASE1:Hg19::chr3:10749696..10749745,-#_bf55d68649fa5bb9d9328e417141e5eap3@ATP2B2
1.68e-75FFCP PHASE2:Hg19::chr3:10749696..10749745,-#_bf55d68649fa5bb9d9328e417141e5eap3@ATP2B2
2.61e-75FFCP PHASE2:Hg19::chr5:146435501..146435530,-#_9fff7a1688c66532d30bd692f9d943e7p3@PPP2R2B
2.61e-75FFCP PHASE1:Hg19::chr5:146435501..146435530,-#_9fff7a1688c66532d30bd692f9d943e7p3@PPP2R2B
3.3e-75FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_a74affec6b55c87c57b209ab59b2e9b7p3@NRXN1
3.3e-75FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_a74affec6b55c87c57b209ab59b2e9b7p3@NRXN1
4.65e-75FFCP PHASE1:Hg19::chr4:165304614..165304693,-#_bb22a9252a9f8553b2a38433b3f1fe4bp3@MARCH1
4.65e-75FFCP PHASE2:Hg19::chr4:165304614..165304693,-#_bb22a9252a9f8553b2a38433b3f1fe4bp3@MARCH1
5.31e-75FFCP PHASE2:Hg19::chr15:30261391..30261419,-#_86a72b8b0b19d0c8041d6a329f8a6003p14@TJP1
5.31e-75FFCP PHASE1:Hg19::chr15:30261391..30261419,-#_86a72b8b0b19d0c8041d6a329f8a6003p14@TJP1
5.33e-75FFCP PHASE2:Hg19::chr5:138210954..138210965,-#_71f801c1385c65b30a6d93317c80d7ecp4@LRRTM2
5.33e-75FFCP PHASE1:Hg19::chr5:138210954..138210965,-#_71f801c1385c65b30a6d93317c80d7ecp4@LRRTM2
6.62e-75FFCP PHASE1:Hg19::chr11:89867681..89867695,+#_847d5fcc21f473690d446edc46cb36d2p2@NAALAD2
6.62e-75FFCP PHASE2:Hg19::chr11:89867681..89867695,+#_847d5fcc21f473690d446edc46cb36d2p2@NAALAD2