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UBERON:0004111

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Name:anatomical conduit
Namespace:FANTOM
Definition:"any opening in the body." [Wikipedia:Foramen]
Xrefs:
links:

AEO:0000080
EHDAA2:0003080

FMA:242873
Synonyms: "foramen" NARROW [EHDAA2:0003080]
"foramina" NARROW PLURAL [UBERON:cjm]
Comments:note that FMA has both conduit and conduit space. In EHDAA2 this is a surface feature

Ontology association

Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.



link to ontology dataset


data

Parents

is_a:UBERON:0000477(anatomical cluster)



Children

is a:UBERON:0000025 (tube),UBERON:0000055 (vessel),UBERON:0000161 (orifice),UBERON:0004145 (outflow tract),UBERON:0005744 (cranial conduit),UBERON:0015787 (upper respiratory conduit)

Ontology Tree: Loaded from BioPortal


FF samples

It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens) Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term
TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004111 (anatomical conduit), sorted by p-values
Analyst: Hideya Kawaji



link to source dataset
human : data

mouse : data

P-valueFFCPShort description
3.09e-50FFCP PHASE1:Hg19::chr19:46105411..46105481,-#_ed5ff2636c4eab5470fa3e8b5c96827fp1@GPR4, p2@OPA3
3.09e-50FFCP PHASE2:Hg19::chr19:46105411..46105481,-#_ed5ff2636c4eab5470fa3e8b5c96827fp1@GPR4, p2@OPA3
5.17e-48FFCP PHASE2:Hg19::chr19:46477244..46477302,-#_05f78df3b012be334bd24e07b927baecp@chr19:46477244..46477302, -
5.17e-48FFCP PHASE1:Hg19::chr19:46477244..46477302,-#_05f78df3b012be334bd24e07b927baecp@chr19:46477244..46477302, -
5.21e-46FFCP PHASE1:Hg19::chr8:21924000..21924036,+#_1199714092d974118d44efecafca5b32p4@EPB49
5.21e-46FFCP PHASE2:Hg19::chr8:21924000..21924036,+#_1199714092d974118d44efecafca5b32p4@EPB49
2.81e-45FFCP PHASE2:Hg19::chr16:66400578..66400600,+#_10baab36c76a223c0df886cd0f8bcafap1@CDH5
2.81e-45FFCP PHASE1:Hg19::chr16:66400578..66400600,+#_10baab36c76a223c0df886cd0f8bcafap1@CDH5
2.66e-43FFCP PHASE1:Hg19::chr6:153019069..153019091,+#_e2c7220dbe2e7259e077a6ad246ea285p1@MYCT1
2.66e-43FFCP PHASE2:Hg19::chr6:153019069..153019091,+#_e2c7220dbe2e7259e077a6ad246ea285p1@MYCT1
5.18e-43FFCP PHASE2:Hg19::chr4:145567297..145567355,+#_e8e02ec33af54d6ec4046e8cbebebff9p1@HHIP
5.18e-43FFCP PHASE1:Hg19::chr4:145567297..145567355,+#_e8e02ec33af54d6ec4046e8cbebebff9p1@HHIP
1.35e-42FFCP PHASE2:Hg19::chr9:27109440..27109456,+#_fda010b641609cabe5623d08c06a3081p2@TEK
1.35e-42FFCP PHASE1:Hg19::chr9:27109440..27109456,+#_fda010b641609cabe5623d08c06a3081p2@TEK
3.14e-42FFCP PHASE1:Hg19::chr10:15413035..15413131,-#_9afee04b520343e6aaa599ad081cbe41p1@FAM171A1
3.14e-42FFCP PHASE2:Hg19::chr10:15413035..15413131,-#_9afee04b520343e6aaa599ad081cbe41p1@FAM171A1
3.34e-41FFCP PHASE2:Hg19::chr20:19867269..19867283,+#_51e7c84c11471aa9631639e60e89bd9cp3@RIN2
3.34e-41FFCP PHASE1:Hg19::chr20:19867269..19867283,+#_51e7c84c11471aa9631639e60e89bd9cp3@RIN2
3.63e-41FFCP PHASE1:Hg19::chr16:19896150..19896205,-#_84ced748cb0f4f2e7065f2dca9c6c83ap1@GPRC5B
3.63e-41FFCP PHASE2:Hg19::chr16:19896150..19896205,-#_84ced748cb0f4f2e7065f2dca9c6c83ap1@GPRC5B
3.97e-40FFCP PHASE2:Hg19::chr4:145662551..145662554,+#_d4296f98a90c9b75cfecfbe0d076cd02p@chr4:145662551..145662554, +
3.97e-40FFCP PHASE1:Hg19::chr4:145662551..145662554,+#_d4296f98a90c9b75cfecfbe0d076cd02p@chr4:145662551..145662554, +
7.24e-40FFCP PHASE1:Hg19::chr15:57668695..57668734,+#_89930225c38600dc3931b5c4e675161bp1@CGNL1
7.24e-40FFCP PHASE2:Hg19::chr15:57668695..57668734,+#_89930225c38600dc3931b5c4e675161bp1@CGNL1
2.94e-39FFCP PHASE1:Hg19::chr19:46476791..46476819,-#_df9c5e9cbf8457eeda06590f09d6223bp1@NOVA2
2.94e-39FFCP PHASE2:Hg19::chr19:46476791..46476819,-#_df9c5e9cbf8457eeda06590f09d6223bp1@NOVA2
9.58e-39FFCP PHASE1:Hg19::chr9:27109392..27109435,+#_2cb8a62766046b48d54d9ef0d6b6de4fp1@TEK
9.58e-39FFCP PHASE2:Hg19::chr9:27109392..27109435,+#_2cb8a62766046b48d54d9ef0d6b6de4fp1@TEK
1.54e-38FFCP PHASE2:Hg19::chr10:88717337..88717379,-#_fe7321e68023af1a891e3a6a99f5e7b5p1@MMRN2
1.54e-38FFCP PHASE1:Hg19::chr10:88717337..88717379,-#_fe7321e68023af1a891e3a6a99f5e7b5p1@MMRN2
8.78e-38FFCP PHASE2:Hg19::chr8:55370487..55370503,+#_cbfdb866be84c034fd411b28c0c45256p1@SOX17
8.78e-38FFCP PHASE1:Hg19::chr8:55370487..55370503,+#_cbfdb866be84c034fd411b28c0c45256p1@SOX17
9.28e-38FFCP PHASE1:Hg19::chr9:14314131..14314147,-#_b74afbafeeab0595d24f741b9ebab144p2@NFIB
9.28e-38FFCP PHASE2:Hg19::chr9:14314131..14314147,-#_b74afbafeeab0595d24f741b9ebab144p2@NFIB
1.14e-37FFCP PHASE1:Hg19::chr3:50360165..50360183,-#_a7db41e27cf392b602eeb0f7cf1de28cp2@HYAL2
1.14e-37FFCP PHASE2:Hg19::chr3:50360165..50360183,-#_a7db41e27cf392b602eeb0f7cf1de28cp2@HYAL2
1.2e-37FFCP PHASE1:Hg19::chr8:21924052..21924103,+#_d4ad3edd10321ce55c567c9de889416bp6@EPB49
1.2e-37FFCP PHASE2:Hg19::chr8:21924052..21924103,+#_d4ad3edd10321ce55c567c9de889416bp6@EPB49
4.72e-37FFCP PHASE2:Hg19::chr5:141257961..141258006,-#_a5194395519de7ffac8f4200571f4a04p1@PCDH1
4.72e-37FFCP PHASE1:Hg19::chr5:141257961..141258006,-#_a5194395519de7ffac8f4200571f4a04p1@PCDH1
5.26e-37FFCP PHASE2:Hg19::chrX:50557095..50557207,-#_4aea6025c3f2f8e7ab273c8c4ec7dfb4p1@SHROOM4
5.26e-37FFCP PHASE1:Hg19::chrX:50557095..50557207,-#_4aea6025c3f2f8e7ab273c8c4ec7dfb4p1@SHROOM4
6.62e-37FFCP PHASE2:Hg19::chr2:133427767..133427797,-#_bd018a98e4b9578ac2958ca3fdee4832p1@LYPD1
6.62e-37FFCP PHASE1:Hg19::chr2:133427767..133427797,-#_bd018a98e4b9578ac2958ca3fdee4832p1@LYPD1
1.11e-36FFCP PHASE1:Hg19::chr5:150004188..150004308,+#_cd73d26d3a70e4ee2351937063349fb5p1@SYNPO
1.11e-36FFCP PHASE2:Hg19::chr5:150004188..150004308,+#_cd73d26d3a70e4ee2351937063349fb5p1@SYNPO
1.16e-36FFCP PHASE2:Hg19::chr11:19736307..19736327,-#_89b0f9a1305a222c994e02d41d30f46cp2@LOC100126784
1.16e-36FFCP PHASE1:Hg19::chr11:19736307..19736327,-#_89b0f9a1305a222c994e02d41d30f46cp2@LOC100126784
3.71e-36FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_5527fc9fd5b0f6988093868b85a4669cp1@NFIB
3.71e-36FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_5527fc9fd5b0f6988093868b85a4669cp1@NFIB
4.4e-36FFCP PHASE1:Hg19::chr5:148521047..148521076,+#_37903366aa371181fe9c74e2066a19c7p1@ABLIM3
4.4e-36FFCP PHASE2:Hg19::chr5:148521047..148521076,+#_37903366aa371181fe9c74e2066a19c7p1@ABLIM3
1.28e-35FFCP PHASE1:Hg19::chr16:2076875..2076915,+#_77d4b65a8c6efd20137e61e5ac92101ap1@SLC9A3R2
1.28e-35FFCP PHASE2:Hg19::chr16:2076875..2076915,+#_77d4b65a8c6efd20137e61e5ac92101ap1@SLC9A3R2
2.42e-35FFCP PHASE2:Hg19::chr1:85930830..85930858,-#_c70b080637d871729671232d403cd5eep1@DDAH1
2.42e-35FFCP PHASE1:Hg19::chr1:85930830..85930858,-#_c70b080637d871729671232d403cd5eep1@DDAH1
3.09e-35FFCP PHASE2:Hg19::chr12:12503156..12503216,-#_b91e263ae1e692c0ab3640df394e37bap1@MANSC1
3.09e-35FFCP PHASE1:Hg19::chr12:12503156..12503216,-#_b91e263ae1e692c0ab3640df394e37bap1@MANSC1
4.78e-35FFCP PHASE1:Hg19::chr17:72968809..72968834,-#_7953afce3873b9f6ce226bdd655dc7b7p1@C17orf28
4.78e-35FFCP PHASE2:Hg19::chr17:72968809..72968834,-#_7953afce3873b9f6ce226bdd655dc7b7p1@C17orf28
1.16e-34FFCP PHASE1:Hg19::chr1:6545502..6545548,-#_7a941f256cde4212324ea3fbdd61c2dap2@PLEKHG5
1.16e-34FFCP PHASE2:Hg19::chr1:6545502..6545548,-#_7a941f256cde4212324ea3fbdd61c2dap2@PLEKHG5
1.44e-34FFCP PHASE2:Hg19::chr4:145567767..145567851,+#_eae64c5b10c1c5855f127c37fd644c25p2@HHIP
1.44e-34FFCP PHASE1:Hg19::chr4:145567767..145567851,+#_eae64c5b10c1c5855f127c37fd644c25p2@HHIP
1.98e-34FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_a8b4a039cdafc47198f4540a59aad9c6p2@SOX17
1.98e-34FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_a8b4a039cdafc47198f4540a59aad9c6p2@SOX17
2.32e-34FFCP PHASE1:Hg19::chr7:150690857..150690878,+#_ca75c87f43f910b41fc8d3c2658166a2p1@NOS3
2.32e-34FFCP PHASE2:Hg19::chr7:150690857..150690878,+#_ca75c87f43f910b41fc8d3c2658166a2p1@NOS3
2.53e-34FFCP PHASE2:Hg19::chr19:54412517..54412583,+#_8cb635c9a1dd269909c8965c61c53e3ap1@CACNG7
2.53e-34FFCP PHASE1:Hg19::chr19:54412517..54412583,+#_8cb635c9a1dd269909c8965c61c53e3ap1@CACNG7
6.6e-34FFCP PHASE1:Hg19::chr19:54411852..54411908,+#_307dbe8b29fec0b1a1f37328a0f738e9p@chr19:54411852..54411908, +
6.6e-34FFCP PHASE2:Hg19::chr19:54411852..54411908,+#_307dbe8b29fec0b1a1f37328a0f738e9p@chr19:54411852..54411908, +
7.68e-34FFCP PHASE2:Hg19::chr5:66311078..66311108,+#_b85348894b5e30ea4ef62d824a9886a7p@chr5:66311078..66311108, +
7.68e-34FFCP PHASE1:Hg19::chr5:66311078..66311108,+#_b85348894b5e30ea4ef62d824a9886a7p@chr5:66311078..66311108, +
8.58e-34FFCP PHASE1:Hg19::chr1:79472365..79472443,-#_ed68efc45ff415b55e05f34d8d5712bap1@ELTD1
8.58e-34FFCP PHASE2:Hg19::chr1:79472365..79472443,-#_ed68efc45ff415b55e05f34d8d5712bap1@ELTD1
1.07e-33FFCP PHASE2:Hg19::chr5:138842286..138842336,-#_d1eba2fc8412ccd1fc68ed3b5c42c4a8p1@ECSCR
1.07e-33FFCP PHASE1:Hg19::chr5:138842286..138842336,-#_d1eba2fc8412ccd1fc68ed3b5c42c4a8p1@ECSCR
1.19e-33FFCP PHASE1:Hg19::chr2:242498138..242498179,+#_46f34509b058d2f92978b022489089e7p1@BOK
1.19e-33FFCP PHASE2:Hg19::chr2:242498138..242498179,+#_46f34509b058d2f92978b022489089e7p1@BOK
1.26e-33FFCP PHASE2:Hg19::chr4:145567278..145567296,+#_0330727f3f2b67456482e129595371bdp3@HHIP
1.26e-33FFCP PHASE1:Hg19::chr4:145567278..145567296,+#_0330727f3f2b67456482e129595371bdp3@HHIP
2.27e-33FFCP PHASE1:Hg19::chr3:58563094..58563126,-#_43fd6b4285cf1410ecb2e2710a852ae5p1@FAM107A
2.27e-33FFCP PHASE2:Hg19::chr3:58563094..58563126,-#_43fd6b4285cf1410ecb2e2710a852ae5p1@FAM107A
2.31e-33FFCP PHASE1:Hg19::chr9:14314946..14314983,-#_0c6343186099899eaee9eac6396e3dadp8@NFIB
2.31e-33FFCP PHASE2:Hg19::chr9:14314946..14314983,-#_0c6343186099899eaee9eac6396e3dadp8@NFIB
2.42e-33FFCP PHASE2:Hg19::chr9:27109199..27109248,+#_5b43b9778728447c798bf0a1f41e4ec0p3@TEK
2.42e-33FFCP PHASE1:Hg19::chr9:27109199..27109248,+#_5b43b9778728447c798bf0a1f41e4ec0p3@TEK
2.59e-33FFCP PHASE1:Hg19::chr6:12290586..12290600,+#_7a6400f360b3e12cacd94cc1b3821001p1@EDN1
2.59e-33FFCP PHASE2:Hg19::chr6:12290586..12290600,+#_7a6400f360b3e12cacd94cc1b3821001p1@EDN1
2.72e-33FFCP PHASE2:Hg19::chr3:195619579..195619630,-#_b2da389506d2683a2769ba57d9f077d8p2@TNK2
2.72e-33FFCP PHASE1:Hg19::chr3:195619579..195619630,-#_b2da389506d2683a2769ba57d9f077d8p2@TNK2
3.0e-33FFCP PHASE2:Hg19::chrX:128788923..128788942,-#_3b49237de304fe0b5975983213b9f022p1@APLN
3.0e-33FFCP PHASE1:Hg19::chrX:128788923..128788942,-#_3b49237de304fe0b5975983213b9f022p1@APLN
3.06e-33FFCP PHASE1:Hg19::chr22:41697520..41697613,+#_9cd15852f96a8e6588ccd7df99627087p1@ZC3H7B
3.06e-33FFCP PHASE2:Hg19::chr22:41697520..41697613,+#_9cd15852f96a8e6588ccd7df99627087p1@ZC3H7B
3.73e-33FFCP PHASE2:Hg19::chr16:66400533..66400545,+#_5bde25a1083a3ff0c4f995a2eb0a0e04p2@CDH5
3.73e-33FFCP PHASE1:Hg19::chr16:66400533..66400545,+#_5bde25a1083a3ff0c4f995a2eb0a0e04p2@CDH5
6.09e-33FFCP PHASE1:Hg19::chr16:19869059..19869073,-#_07f713e9a33fae327691834469617f8dp@chr16:19869059..19869073, -
6.09e-33FFCP PHASE2:Hg19::chr16:19869059..19869073,-#_07f713e9a33fae327691834469617f8dp@chr16:19869059..19869073, -