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UBERON:0004357

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Name:paired limb/fin bud
Namespace:FANTOM
Xrefs:
links:
VHOG:0001258
Synonyms: "paired appendage bud" EXACT []
Comments:Genes: In limb buds of chick and mouse, Shh expression is activated as soon as there is a morphological bud, whereas in S. canicula fin buds, consistent with reported data in other cartilaginous fishes, Shh is transcribed late in fin development[PMID:17187056]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002050(embryonic structure),UBERON:0003102(surface structure)
develops_from:UBERON:0005732(limb/fin field)
part_of:UBERON:0000922(embryo)



Children

is a:UBERON:0004347 (limb bud),UBERON:0005419 (pectoral appendage bud),UBERON:0005420 (pelvic appendage bud)
develops from:UBERON:0004708 (paired limb/fin)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004357 (paired limb/fin bud), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_e0f7000c39621f7dc80a4678a30855d9p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_e0f7000c39621f7dc80a4678a30855d9p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_e0f7000c39621f7dc80a4678a30855d9p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_e0f7000c39621f7dc80a4678a30855d9p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_e0f7000c39621f7dc80a4678a30855d9p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_e0f7000c39621f7dc80a4678a30855d9p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_e0f7000c39621f7dc80a4678a30855d9p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_e0f7000c39621f7dc80a4678a30855d9p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_e0f7000c39621f7dc80a4678a30855d9p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_e0f7000c39621f7dc80a4678a30855d9p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_e0f7000c39621f7dc80a4678a30855d9p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_e0f7000c39621f7dc80a4678a30855d9p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_e0f7000c39621f7dc80a4678a30855d9p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_e0f7000c39621f7dc80a4678a30855d9p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_e0f7000c39621f7dc80a4678a30855d9p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_e0f7000c39621f7dc80a4678a30855d9p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_e0f7000c39621f7dc80a4678a30855d9p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_e0f7000c39621f7dc80a4678a30855d9p@chr11:3691037..3691040, +
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5+, p@chr5:137206180..137206187
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr1:145478051..145478060, -
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_1ce0bba84d838b31b1f0619639f8a1fep27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr3:46924232..46924241, +
2.55e-98FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr12:102079632..102079647, -
2.55e-98FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr5:95180155..95180172, +
2.55e-98FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_1ce0bba84d838b31b1f0619639f8a1fep73@XIRP2
2.55e-98FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_1ce0bba84d838b31b1f0619639f8a1fep27@CLIP4
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr6:125535391..125535409, +
2.55e-98FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr22:26299595..26299605, +
2.55e-98FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr5:95180155..95180172, +
2.55e-98FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_1ce0bba84d838b31b1f0619639f8a1fe+, p@chr22:26299595..26299605
2.55e-98FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr2:152566311..152566321, -
2.55e-98FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr18:8608021..8608050, +
2.55e-98FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr18:8608021..8608050, +
2.55e-98FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr10:29918007..29918031, -
2.55e-98FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_1ce0bba84d838b31b1f0619639f8a1fe-, p@chr2:152590465..152590472
2.55e-98FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_1ce0bba84d838b31b1f0619639f8a1fep38@CLIP1
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr6:125535391..125535409, +
2.55e-98FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr3:35732964..35732965, +
2.55e-98FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr12:69653866..69653876, +
2.55e-98FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_1ce0bba84d838b31b1f0619639f8a1fep38@CLIP1