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UBERON:0004347

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Name:limb bud
Namespace:FANTOM
Definition:"the mesenchymal outgrowth on the lateral trunk of the embryo that develops into a limb[MP]." [MP:0005650, Wikipedia:Limb_bud]
Xrefs:
links:

AAO:0010375
BTO:0001640
GAID:1307
MESH:A.16.254.462
ncithesaurus:Limb_Bud

XAO:0003161
Synonyms: "gemmae membrorum" RELATED LATIN [Wikipedia:Limb_bud]
"limb buds" EXACT PLURAL []
"limbbud" EXACT [GO:0060174]
Comments:induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004357(paired limb/fin bud)
develops_from:UBERON:0005733(limb field)



Children

is a:UBERON:0005417 (forelimb bud),UBERON:0005418 (hindlimb bud)
develops from:UBERON:0002101 (limb),UBERON:0010130 (autopod plate)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004347 (limb bud), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_2b70fa7aa129c6b1ae994f78b59895b0p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_2b70fa7aa129c6b1ae994f78b59895b0p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_2b70fa7aa129c6b1ae994f78b59895b0p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_2b70fa7aa129c6b1ae994f78b59895b0p@chr2:179396370..179396375, -
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_4e40f97ba5019b2926d94b53c38c28f4p46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_4e40f97ba5019b2926d94b53c38c28f4p77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_4e40f97ba5019b2926d94b53c38c28f4p54@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_4e40f97ba5019b2926d94b53c38c28f4p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_4e40f97ba5019b2926d94b53c38c28f4p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_4e40f97ba5019b2926d94b53c38c28f4p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_4e40f97ba5019b2926d94b53c38c28f4p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_4e40f97ba5019b2926d94b53c38c28f4p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_4e40f97ba5019b2926d94b53c38c28f4p7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_4e40f97ba5019b2926d94b53c38c28f4p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_4e40f97ba5019b2926d94b53c38c28f4p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_4e40f97ba5019b2926d94b53c38c28f4p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_4e40f97ba5019b2926d94b53c38c28f4p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_4e40f97ba5019b2926d94b53c38c28f4p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_4e40f97ba5019b2926d94b53c38c28f4p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_4e40f97ba5019b2926d94b53c38c28f4+, p@chr5:137206180..137206187
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_4e40f97ba5019b2926d94b53c38c28f4p77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr5:117747577..117747580, +
2.55e-98FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr22:26299595..26299605, +
2.55e-98FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr12:102079632..102079647, -
2.55e-98FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_1c1f84dfd582b5d978eec6a804d8846ep27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr18:8608021..8608050, +
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr6:125535391..125535409, +
2.55e-98FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr5:95180155..95180172, +
2.55e-98FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_1c1f84dfd582b5d978eec6a804d8846ep38@CLIP1
2.55e-98FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_1c1f84dfd582b5d978eec6a804d8846e+, p@chr22:26299595..26299605
2.55e-98FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr18:8608021..8608050, +
2.55e-98FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr10:29918007..29918031, -
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr12:69653866..69653876, +
2.55e-98FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_1c1f84dfd582b5d978eec6a804d8846ep38@CLIP1
2.55e-98FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr6:125535391..125535409, +
2.55e-98FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_1c1f84dfd582b5d978eec6a804d8846e-, p@chr2:152590465..152590472
2.55e-98FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr3:35732964..35732965, +
2.55e-98FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr3:35732964..35732965, +
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr3:46924232..46924241, +
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr12:102079632..102079647, -
2.55e-98FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_1c1f84dfd582b5d978eec6a804d8846ep73@XIRP2










Property "Property value" (as page type) with input value "UBPROP:0000001 "Early outgrowth of presumptive limb.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.