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UBERON:0002050

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Name:embryonic structure
Namespace:FANTOM
Definition:"Anatomical structure that is part of an embryo." [BTO:0000174, ZFIN:curator]
Xrefs:
links:

AAO:0000138
AEO:0000125
BILA:0000034
BTO:0000174
EFO:0000461
FBbt:00004208
FMA:69067
GAID:407
MESH:A.16
ncithesaurus:Embryonic_Structure
RETIRED_EHDAA2:0003169
SCTID:667009
TAO:0001105
VSAO:0000178
XAO:0003042

ZFA:0001105
Synonyms: "developing embryonic structure" EXACT [FBbt:00004208]
"developing structure" RELATED []
"embryonale Struktur" RELATED [BTO:0000174]
"embryonic anatomical structure" EXACT [RETIRED_EHDAA2:0003169]
Comments:Note in FMA embryo is_a embryonic structure
Alt_id: UBERON:FMA_69067-XAO_0003042-ZFA_0001105
Subset: inconsistent_with_fma
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000061(anatomical structure),UBERON:0005423(developing anatomical structure)
part_of:UBERON:0000922(embryo)



Children

is a:UBERON:0000087 (inner cell mass),UBERON:0000088 (trophoblast),UBERON:0000091 (bilaminar disc),UBERON:0000163 (embryonic cloaca),UBERON:0000358 (blastocyst),UBERON:0000930 (stomodeum),UBERON:0000931 (proctodeum),UBERON:0002061 (truncus arteriosus),UBERON:0002296 (dorsal mesentery),UBERON:0002532 (epiblast (generic)),UBERON:0002539 (pharyngeal arch),UBERON:0003285 (limb of embryo),UBERON:0003890 (Mullerian duct),UBERON:0004348 (optic eminence),UBERON:0004357 (paired limb/fin bud),UBERON:0004363 (pharyngeal arch artery),UBERON:0005291 (embryonic tissue),UBERON:0005432 (aortic sac),UBERON:0005498 (primitive heart tube),UBERON:0005602 (dorsal mesogastrium),UBERON:0005795 (embryonic uterus),UBERON:0006222 (future diencephalon),UBERON:0006232 (facio-acoustic VII-VIII preganglion complex),UBERON:0006256 (knee joint primordium),UBERON:0007026 (primitive gut),UBERON:0008814 (pharyngeal arch system),UBERON:0008816 (embryonic head),UBERON:0009117 (indifferent gonad),UBERON:0009142 (entire embryonic mesenchyme),UBERON:0009196 (indifferent external genitalia),UBERON:0010130 (autopod plate),UBERON:0010375 (pancreas dorsal primordium),UBERON:0011628 (early premaxilla),UBERON:0011997 (coelom),UBERON:0012292 (embryonic cloacal fold),UBERON:0013241 (embryonic urethral groove),UBERON:0014371 (future telencephalon)
disjoint from:UBERON:0000478 (extraembryonic structure)
part of:UBERON:0005291 (embryonic tissue)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002050 (embryonic structure), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
4.53e-31FFCP PHASE1:Hg19::chr20:23618584..23618603,-#_d858c19b45243c63c7c2091a84fd2fbfp1@CST3
4.53e-31FFCP PHASE2:Hg19::chr20:23618584..23618603,-#_d858c19b45243c63c7c2091a84fd2fbfp1@CST3
1.85e-30FFCP PHASE1:Hg19::chr13:77460532..77460548,-#_8bb6b038a6d5582678b22b237bcbca3cp1@KCTD12
1.85e-30FFCP PHASE2:Hg19::chr13:77460532..77460548,-#_8bb6b038a6d5582678b22b237bcbca3cp1@KCTD12
1.06e-29FFCP PHASE2:Hg19::chr13:45010939..45011033,-#_99c359f96069acd87d8d854aedeb6118p1@TSC22D1
1.06e-29FFCP PHASE1:Hg19::chr13:45010939..45011033,-#_99c359f96069acd87d8d854aedeb6118p1@TSC22D1
1.91e-28FFCP PHASE2:Hg19::chr2:230135937..230136016,-#_d4b4c1819be61b0d66a14e0f9a3ba041p1@PID1
1.91e-28FFCP PHASE1:Hg19::chr2:230135937..230136016,-#_d4b4c1819be61b0d66a14e0f9a3ba041p1@PID1
3.23e-27FFCP PHASE1:Hg19::chr7:111846435..111846471,-#_1a073e7d1d6d674ea81802aef162f340p1@DOCK4
3.23e-27FFCP PHASE2:Hg19::chr7:111846435..111846471,-#_1a073e7d1d6d674ea81802aef162f340p1@DOCK4
1.12e-26FFCP PHASE1:Hg19::chr11:1330834..1330875,-#_109507a1b40d25952afe5bc9aab2a702p1@TOLLIP
1.12e-26FFCP PHASE2:Hg19::chr11:1330834..1330875,-#_109507a1b40d25952afe5bc9aab2a702p1@TOLLIP
4.28e-26FFCP PHASE2:Hg19::chr13:77460594..77460613,-#_7ad817e9ae050123e39be4e5fcdd0a6ap3@KCTD12
4.28e-26FFCP PHASE1:Hg19::chr13:77460594..77460613,-#_7ad817e9ae050123e39be4e5fcdd0a6ap3@KCTD12
7.76e-25FFCP PHASE1:Hg19::chr12:112204714..112204781,+#_0bb735c5be4d68b7623773b5fd520cf2p1@ALDH2
7.76e-25FFCP PHASE2:Hg19::chr12:112204714..112204781,+#_0bb735c5be4d68b7623773b5fd520cf2p1@ALDH2
1.05e-24FFCP PHASE2:Hg19::chr4:85887789..85887862,-#_c9a5611eb61c5be0d5febe3f2759aefdp1@WDFY3
1.05e-24FFCP PHASE1:Hg19::chr4:85887789..85887862,-#_c9a5611eb61c5be0d5febe3f2759aefdp1@WDFY3
2.14e-24FFCP PHASE1:Hg19::chr8:30670289..30670354,-#_292edeba934edd2e5dce78065c2b1935p1@PPP2CB
2.14e-24FFCP PHASE2:Hg19::chr8:30670289..30670354,-#_292edeba934edd2e5dce78065c2b1935p1@PPP2CB
5.99e-24FFCP PHASE1:Hg19::chr13:77460635..77460654,-#_930f48e78896754c3fb76bb8933c0a4cp2@KCTD12
5.99e-24FFCP PHASE2:Hg19::chr13:77460635..77460654,-#_930f48e78896754c3fb76bb8933c0a4cp2@KCTD12
7.3e-24FFCP PHASE1:Hg19::chr16:4852616..4852679,-#_930a5d04ee33d5418d9376e995c0ced2p1@ROGDI
7.3e-24FFCP PHASE2:Hg19::chr16:4852616..4852679,-#_930a5d04ee33d5418d9376e995c0ced2p1@ROGDI
2.42e-23FFCP PHASE2:Hg19::chr16:2563989..2564006,+#_29f66dac6362667956c0d3c837baf3efp2@ATP6V0C
2.42e-23FFCP PHASE1:Hg19::chr16:2563989..2564006,+#_29f66dac6362667956c0d3c837baf3efp2@ATP6V0C
4.38e-23FFCP PHASE1:Hg19::chr19:40871734..40871809,+#_e3838a447824581b351e909e35c4121bp1@PLD3
4.38e-23FFCP PHASE2:Hg19::chr19:40871734..40871809,+#_e3838a447824581b351e909e35c4121bp1@PLD3
5.01e-23FFCP PHASE1:Hg19::chr4:159094160..159094185,-#_b58d5e76212f3b12a0f9d083c143b781p2@FAM198B
5.01e-23FFCP PHASE2:Hg19::chr4:159094160..159094185,-#_b58d5e76212f3b12a0f9d083c143b781p2@FAM198B
5.59e-23FFCP PHASE2:Hg19::chr1:183774240..183774270,+#_3b838a685d6e5f9c919a7110b80d0a01p1@RGL1
5.59e-23FFCP PHASE1:Hg19::chr1:183774240..183774270,+#_3b838a685d6e5f9c919a7110b80d0a01p1@RGL1
6.77e-23FFCP PHASE2:Hg19::chr20:35974484..35974529,+#_12fc5b6b59aeb272c931f4c6dd5ac0ccp2@SRC
6.77e-23FFCP PHASE1:Hg19::chr20:35974484..35974529,+#_12fc5b6b59aeb272c931f4c6dd5ac0ccp2@SRC
1.19e-22FFCP PHASE2:Hg19::chr11:65082349..65082378,+#_6364068effcd6f95e18930efdba39f89p1@CDC42EP2
1.19e-22FFCP PHASE1:Hg19::chr11:65082349..65082378,+#_6364068effcd6f95e18930efdba39f89p1@CDC42EP2
1.43e-22FFCP PHASE2:Hg19::chr19:6720653..6720670,-#_e164befb856b7417d28c15c54b4e7251p1@C3
1.43e-22FFCP PHASE1:Hg19::chr19:6720653..6720670,-#_e164befb856b7417d28c15c54b4e7251p1@C3
1.78e-22FFCP PHASE2:Hg19::chr15:90456156..90456198,-#_46a26dd9408e86a05d17aa7f1f283d19p1@C15orf38
1.78e-22FFCP PHASE1:Hg19::chr15:90456156..90456198,-#_46a26dd9408e86a05d17aa7f1f283d19p1@C15orf38
1.87e-22FFCP PHASE1:Hg19::chr4:24914581..24914691,-#_decc0f032aab9f04551be13e2249e20dp1@CCDC149
1.87e-22FFCP PHASE2:Hg19::chr4:24914581..24914691,-#_decc0f032aab9f04551be13e2249e20dp1@CCDC149
2.63e-22FFCP PHASE1:Hg19::chr18:59561635..59561651,-#_1696a099ff45195e8031870cf386dd24p@chr18:59561635..59561651, -
2.63e-22FFCP PHASE2:Hg19::chr18:59561635..59561651,-#_1696a099ff45195e8031870cf386dd24p@chr18:59561635..59561651, -
5.07e-22FFCP PHASE1:Hg19::chr19:44100155..44100211,-#_b1bcb234e86e33aaf9fa51bf3e777133p1@IRGQ
5.07e-22FFCP PHASE2:Hg19::chr19:44100155..44100211,-#_b1bcb234e86e33aaf9fa51bf3e777133p1@IRGQ
5.66e-22FFCP PHASE1:Hg19::chr17:1466030..1466129,-#_f238cf566bf4423e3b89fb1e59514b55p1@PITPNA
5.66e-22FFCP PHASE2:Hg19::chr17:1466030..1466129,-#_f238cf566bf4423e3b89fb1e59514b55p1@PITPNA
7.24e-22FFCP PHASE2:Hg19::chr7:2671611..2671658,+#_a8b4fcf1fa2522dd0c3f149470891618p2@TTYH3
7.24e-22FFCP PHASE1:Hg19::chr7:2671611..2671658,+#_a8b4fcf1fa2522dd0c3f149470891618p2@TTYH3
1.04e-21FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_02f3ac34340382422b6683474f6ec06fp1@NFIB
1.04e-21FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_02f3ac34340382422b6683474f6ec06fp1@NFIB
1.42e-21FFCP PHASE1:Hg19::chr18:59561658..59561685,-#_899d000dfe981a654a9499e182c109d0p@chr18:59561658..59561685, -
1.42e-21FFCP PHASE2:Hg19::chr18:59561658..59561685,-#_899d000dfe981a654a9499e182c109d0p@chr18:59561658..59561685, -
1.76e-21FFCP PHASE2:Hg19::chr17:7492684..7492778,-#_843890bc9f1db414479ab378da9d8003p2@SOX15
1.76e-21FFCP PHASE1:Hg19::chr17:7492684..7492778,-#_843890bc9f1db414479ab378da9d8003p2@SOX15
1.92e-21FFCP PHASE2:Hg19::chr2:127864839..127864888,-#_6445d435b028a21027f48199d6c680adp2@BIN1
1.92e-21FFCP PHASE1:Hg19::chr2:127864839..127864888,-#_6445d435b028a21027f48199d6c680adp2@BIN1
3.14e-21FFCP PHASE1:Hg19::chr9:14314131..14314147,-#_ee3d4b449e4108d2625de95b82b11e77p2@NFIB
3.14e-21FFCP PHASE2:Hg19::chr9:14314131..14314147,-#_ee3d4b449e4108d2625de95b82b11e77p2@NFIB
3.31e-21FFCP PHASE2:Hg19::chr1:10270620..10270637,+#_c5cccb1f84792586dc292679accf211dp1@KIF1B
3.31e-21FFCP PHASE1:Hg19::chr1:10270620..10270637,+#_c5cccb1f84792586dc292679accf211dp1@KIF1B
7.13e-21FFCP PHASE2:Hg19::chr10:30025922..30025958,-#_256456901ada28627fe5441ea50d983bp3@SVIL
7.13e-21FFCP PHASE1:Hg19::chr10:30025922..30025958,-#_256456901ada28627fe5441ea50d983bp3@SVIL
7.14e-21FFCP PHASE2:Hg19::chr17:73851380..73851427,-#_ef93584d93eb88383fd74d0673b3a4afp1@WBP2
7.14e-21FFCP PHASE1:Hg19::chr17:73851380..73851427,-#_ef93584d93eb88383fd74d0673b3a4afp1@WBP2
1.03e-20FFCP PHASE2:Hg19::chr2:127864608..127864688,-#_0b4ce5200381a358c53c99f041798d7dp1@BIN1
1.03e-20FFCP PHASE1:Hg19::chr2:127864608..127864688,-#_0b4ce5200381a358c53c99f041798d7dp1@BIN1
1.29e-20FFCP PHASE1:Hg19::chr9:34989685..34989748,+#_9d4c95b0aa8ff87d3c5a6026c714f01ap1@DNAJB5
1.29e-20FFCP PHASE2:Hg19::chr9:34989685..34989748,+#_9d4c95b0aa8ff87d3c5a6026c714f01ap1@DNAJB5
2.36e-20FFCP PHASE1:Hg19::chr22:31003154..31003188,+#_81852d5f8744dd0a7209ea10d699ad09p1@TCN2
2.36e-20FFCP PHASE2:Hg19::chr22:31003154..31003188,+#_81852d5f8744dd0a7209ea10d699ad09p1@TCN2
2.87e-20FFCP PHASE2:Hg19::chr12:110719036..110719113,+#_46cc6473c14383b161763e6385198d4dp1@ATP2A2
2.87e-20FFCP PHASE1:Hg19::chr12:110719036..110719113,+#_46cc6473c14383b161763e6385198d4dp1@ATP2A2
3.22e-20FFCP PHASE2:Hg19::chr19:14228541..14228582,-#_d17e9342afe94efa240a040358a149c9p1@PRKACA
3.22e-20FFCP PHASE1:Hg19::chr19:14228541..14228582,-#_d17e9342afe94efa240a040358a149c9p1@PRKACA
3.72e-20FFCP PHASE1:Hg19::chr10:118764649..118764683,-#_0f5396f48e60d08bd533d1ccefe351dfp2@KIAA1598
3.72e-20FFCP PHASE2:Hg19::chr10:118764649..118764683,-#_0f5396f48e60d08bd533d1ccefe351dfp2@KIAA1598
3.9e-20FFCP PHASE2:Hg19::chr1:68698197..68698214,-#_523ae4db432d985124ac7e7188ea9badp1@WLS
3.9e-20FFCP PHASE1:Hg19::chr1:68698197..68698214,-#_523ae4db432d985124ac7e7188ea9badp1@WLS
5.62e-20FFCP PHASE2:Hg19::chr16:89787269..89787359,-#_823cc04d67b1d0a774f97f54e7035d3dp1@C16orf7
5.62e-20FFCP PHASE1:Hg19::chr16:89787269..89787359,-#_823cc04d67b1d0a774f97f54e7035d3dp1@C16orf7
6.21e-20FFCP PHASE2:Hg19::chr2:153191678..153191697,+#_4012c8adeb686a84872b8b44dc2217e6p1@FMNL2
6.21e-20FFCP PHASE1:Hg19::chr2:153191678..153191697,+#_4012c8adeb686a84872b8b44dc2217e6p1@FMNL2
7.05e-20FFCP PHASE1:Hg19::chr15:64995399..64995422,-#_a0673acefa04cc54109e1a016387d187p1@OAZ2
7.05e-20FFCP PHASE2:Hg19::chr15:64995399..64995422,-#_a0673acefa04cc54109e1a016387d187p1@OAZ2
7.55e-20FFCP PHASE1:Hg19::chr10:25012800..25012822,-#_e16a7269f5ff8717f5f65cc41e4ad213p1@ARHGAP21
7.55e-20FFCP PHASE2:Hg19::chr10:25012800..25012822,-#_e16a7269f5ff8717f5f65cc41e4ad213p1@ARHGAP21
1.14e-19FFCP PHASE2:Hg19::chr6:123110389..123110441,+#_eaa8845d2d19acc4a88175de9109d64bp1@SMPDL3A
1.14e-19FFCP PHASE1:Hg19::chr6:123110389..123110441,+#_eaa8845d2d19acc4a88175de9109d64bp1@SMPDL3A
1.21e-19FFCP PHASE2:Hg19::chr20:23614485..23614564,-#_6ad72a97905ec28e8ac946c6bfcee604p@chr20:23614485..23614564, -
1.21e-19FFCP PHASE1:Hg19::chr20:23614485..23614564,-#_6ad72a97905ec28e8ac946c6bfcee604p@chr20:23614485..23614564, -
1.23e-19FFCP PHASE1:Hg19::chr4:77134999..77135036,-#_ea92c963e05ded40c88b0250c9642f41p3@SCARB2
1.23e-19FFCP PHASE2:Hg19::chr4:77134999..77135036,-#_ea92c963e05ded40c88b0250c9642f41p3@SCARB2
1.59e-19FFCP PHASE2:Hg19::chr12:52345448..52345532,+#_4292215ed2e38922cfcd1bbf5d17ae06p1@ACVR1B
1.59e-19FFCP PHASE1:Hg19::chr12:52345448..52345532,+#_4292215ed2e38922cfcd1bbf5d17ae06p1@ACVR1B
1.75e-19FFCP PHASE2:Hg19::chr16:2563941..2563983,+#_fc839cd0850ee4913f8f56ba475423f8p1@ATP6V0C
1.75e-19FFCP PHASE1:Hg19::chr16:2563941..2563983,+#_fc839cd0850ee4913f8f56ba475423f8p1@ATP6V0C
1.76e-19FFCP PHASE1:Hg19::chr8:28559004..28559039,+#_0f8f8a0edafbff7b6e1bd8bb39f67bc9p1@EXTL3
1.76e-19FFCP PHASE2:Hg19::chr8:28559004..28559039,+#_0f8f8a0edafbff7b6e1bd8bb39f67bc9p1@EXTL3










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.