Personal tools

UBERON:0005085

From FANTOM5_SSTAR

Jump to: navigation, search

Name:ectodermal placode
Namespace:FANTOM
Definition:"An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]" [GO:0060788]
Comments:Homology: With the exception of the adenohypophysis, homologues of the nonneurogenic placodes (e.g. placodes giving rise to the teeth, hair follicles and lens), appear to be lacking in invertebrate chordates. Editor notes: consder adding placodal ectoderm as a distinct class? Also place placodal ectoderm as develops_from ectoderm

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0001048(primordium)
part_of:UBERON:0000924(ectoderm)



Children

is a:UBERON:0002546 (cranial placode),UBERON:0011814 (non-neurogenic ectodermal placode)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005085 (ectodermal placode), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.21e-60FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_319474fd79d06e4a21a03269347f2259p@chr17:31817987..31818013, +
5.21e-60FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_319474fd79d06e4a21a03269347f2259p6@Celf1
5.21e-60FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_319474fd79d06e4a21a03269347f2259p4@Dct
5.21e-60FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_319474fd79d06e4a21a03269347f2259p@chr17:31817987..31818013, +
5.21e-60FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_319474fd79d06e4a21a03269347f2259p@chr17:31818263..31818276, +
5.21e-60FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_319474fd79d06e4a21a03269347f2259p4@Dct
5.21e-60FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_319474fd79d06e4a21a03269347f2259p8@Osbp2
5.21e-60FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_319474fd79d06e4a21a03269347f2259p3@Osbp2
5.21e-60FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_319474fd79d06e4a21a03269347f2259p@chr17:31818263..31818276, +
5.21e-60FFCP PHASE2:Mm9::chr11:5876195..5876219,-#_319474fd79d06e4a21a03269347f2259p@chr11:5876195..5876219, -
5.21e-60FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_319474fd79d06e4a21a03269347f2259p5@Zfp365
5.21e-60FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_319474fd79d06e4a21a03269347f2259p@chr11:77532391..77532408, -
5.21e-60FFCP PHASE1:Mm9::chr11:5876195..5876219,-#_319474fd79d06e4a21a03269347f2259p@chr11:5876195..5876219, -
5.21e-60FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_319474fd79d06e4a21a03269347f2259p3@Osbp2
5.21e-60FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_319474fd79d06e4a21a03269347f2259p@chr17:31815126..31815139, -
5.21e-60FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_319474fd79d06e4a21a03269347f2259p@chr17:31818106..31818119, +
5.21e-60FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_319474fd79d06e4a21a03269347f2259p@chr3:129525389..129525400, -
5.21e-60FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_319474fd79d06e4a21a03269347f2259p@chr17:31818106..31818119, +
5.21e-60FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_319474fd79d06e4a21a03269347f2259p1@E130218I03Rik
5.21e-60FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_319474fd79d06e4a21a03269347f2259p6@Celf1
5.21e-60FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_319474fd79d06e4a21a03269347f2259p@chr11:77532391..77532408, -
5.21e-60FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_319474fd79d06e4a21a03269347f2259p5@Zfp365
5.21e-60FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_319474fd79d06e4a21a03269347f2259p1@Mir184
5.21e-60FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_319474fd79d06e4a21a03269347f2259p@chr10:127668442..127668453, +
5.21e-60FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_319474fd79d06e4a21a03269347f2259p@chr11:77532283..77532316, -
5.21e-60FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_319474fd79d06e4a21a03269347f2259p1@Mir184
5.21e-60FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_319474fd79d06e4a21a03269347f2259p@chr11:77532283..77532316, -
5.21e-60FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_319474fd79d06e4a21a03269347f2259p1@E130218I03Rik
5.21e-60FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_319474fd79d06e4a21a03269347f2259p@chr17:31815126..31815139, -
5.21e-60FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_319474fd79d06e4a21a03269347f2259p@chr10:127668442..127668453, +
5.21e-60FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_319474fd79d06e4a21a03269347f2259p8@Osbp2
5.21e-60FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_319474fd79d06e4a21a03269347f2259-, p@chr16:21743134..21743139
5.21e-60FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_319474fd79d06e4a21a03269347f2259p@chr16:21743134..21743139, -
5.21e-60FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_319474fd79d06e4a21a03269347f2259p@chr3:129525389..129525400, -
3.12e-54FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_1fa336b024598f5e686f63499f1589a0p3@LOC100504989, p3@Timeless
3.12e-54FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_1fa336b024598f5e686f63499f1589a0p3@LOC100504989, p3@Timeless
3.12e-54FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_1fa336b024598f5e686f63499f1589a0p@chr7:64675015..64675028, +
3.12e-54FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_1fa336b024598f5e686f63499f1589a0p@chr7:64675015..64675028, +
3.6e-54FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_10d84c1da81736d7dfe79bc4851dd78ep@chr6:97891135..97891147, +
3.6e-54FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_10d84c1da81736d7dfe79bc4851dd78ep6@Pax6
3.6e-54FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_10d84c1da81736d7dfe79bc4851dd78ep@chr6:97891135..97891147, +
3.6e-54FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_10d84c1da81736d7dfe79bc4851dd78ep6@Pax6
4.15e-54FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_df2d40a560b649e4126033a7f548d404p1@4933429O19Rik
4.15e-54FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_df2d40a560b649e4126033a7f548d404p1@4933429O19Rik
1.94e-53FFCP PHASE1:Mm9::chr6:85969237..85969247,+#_e2893feaec9dd349ee48f2e56700d837p@chr6:85969237..85969247, +
1.94e-53FFCP PHASE1:Mm9::chr5:112696408..112696421,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:112696408..112696421, -
1.94e-53FFCP PHASE2:Mm9::chr5:112690636..112690656,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112690636..112690656, +
1.94e-53FFCP PHASE2:Mm9::chr17:31817947..31817965,+#_e2893feaec9dd349ee48f2e56700d837p@chr17:31817947..31817965, +
1.94e-53FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112686483..112686494, +
1.94e-53FFCP PHASE2:Mm9::chr14:49501519..49501530,-#_e2893feaec9dd349ee48f2e56700d837p@chr14:49501519..49501530, -
1.94e-53FFCP PHASE1:Mm9::chr9:107964319..107964338,-#_e2893feaec9dd349ee48f2e56700d837p11@Rnf123
1.94e-53FFCP PHASE2:Mm9::chr5:112696408..112696421,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:112696408..112696421, -
1.94e-53FFCP PHASE1:Mm9::chr1:38092602..38092616,+#_e2893feaec9dd349ee48f2e56700d837p@chr1:38092602..38092616, +
1.94e-53FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_e2893feaec9dd349ee48f2e56700d837p3@Rrh
1.94e-53FFCP PHASE2:Mm9::chr1:65149656..65149674,-#_e2893feaec9dd349ee48f2e56700d837p2@Cryga
1.94e-53FFCP PHASE2:Mm9::chr5:112690729..112690741,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112690729..112690741, +
1.94e-53FFCP PHASE2:Mm9::chr5:113506006..113506025,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:113506006..113506025, -
1.94e-53FFCP PHASE1:Mm9::chr5:112675556..112675574,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:112675556..112675574, -
1.94e-53FFCP PHASE2:Mm9::chr1:65147224..65147236,-#_e2893feaec9dd349ee48f2e56700d837p@chr1:65147224..65147236, -
1.94e-53FFCP PHASE1:Mm9::chr3:34488839..34488876,+#_e2893feaec9dd349ee48f2e56700d837p1@ENSMUST00000173365
1.94e-53FFCP PHASE1:Mm9::chr5:112691047..112691066,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112691047..112691066, +
1.94e-53FFCP PHASE1:Mm9::chr1:65146997..65147021,-#_e2893feaec9dd349ee48f2e56700d837p@chr1:65146997..65147021, -
1.94e-53FFCP PHASE2:Mm9::chr14:35413322..35413333,-#_e2893feaec9dd349ee48f2e56700d837p1@Opn4
1.94e-53FFCP PHASE1:Mm9::chr5:112690729..112690741,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112690729..112690741, +
1.94e-53FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_e2893feaec9dd349ee48f2e56700d837p@chr1:38092538..38092550, +
1.94e-53FFCP PHASE1:Mm9::chr2:93906955..93906973,-#_e2893feaec9dd349ee48f2e56700d837p2@Hsd17b12
1.94e-53FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:113507470..113507483, -
1.94e-53FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_e2893feaec9dd349ee48f2e56700d837p1@Cngb3
1.94e-53FFCP PHASE1:Mm9::chr10:127668686..127668697,+#_e2893feaec9dd349ee48f2e56700d837p4@LOC100504989, p4@Timeless
1.94e-53FFCP PHASE1:Mm9::chr5:113504891..113504916,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:113504891..113504916, -
1.94e-53FFCP PHASE2:Mm9::chr1:38092602..38092616,+#_e2893feaec9dd349ee48f2e56700d837p@chr1:38092602..38092616, +
1.94e-53FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:113507470..113507483, -
1.94e-53FFCP PHASE1:Mm9::chr5:112690636..112690656,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112690636..112690656, +
1.94e-53FFCP PHASE1:Mm9::chr3:129525452..129525463,-#_e2893feaec9dd349ee48f2e56700d837p3@Rrh
1.94e-53FFCP PHASE1:Mm9::chr6:115162924..115162933,+#_e2893feaec9dd349ee48f2e56700d837p@chr6:115162924..115162933, +
1.94e-53FFCP PHASE1:Mm9::chr5:112698505..112698537,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:112698505..112698537, -
1.94e-53FFCP PHASE2:Mm9::chr8:77582194..77582219,+#_e2893feaec9dd349ee48f2e56700d837p@chr8:77582194..77582219, +
1.94e-53FFCP PHASE2:Mm9::chr5:112690744..112690755,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112690744..112690755, +
1.94e-53FFCP PHASE1:Mm9::chr5:112681470..112681483,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:112681470..112681483, -
1.94e-53FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_e2893feaec9dd349ee48f2e56700d837p@chr6:115162924..115162933, +
1.94e-53FFCP PHASE1:Mm9::chr17:31816514..31816526,+#_e2893feaec9dd349ee48f2e56700d837p@chr17:31816514..31816526, +
1.94e-53FFCP PHASE1:Mm9::chr7:29477874..29477889,+#_e2893feaec9dd349ee48f2e56700d837p6@Fbxo27
1.94e-53FFCP PHASE2:Mm9::chr5:112688342..112688357,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112688342..112688357, +
1.94e-53FFCP PHASE1:Mm9::chr15:36655026..36655032,+#_e2893feaec9dd349ee48f2e56700d837p@chr15:36655026..36655032, +
1.94e-53FFCP PHASE1:Mm9::chr5:113506190..113506202,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:113506190..113506202, -
1.94e-53FFCP PHASE2:Mm9::chr10:93761330..93761358,-#_e2893feaec9dd349ee48f2e56700d837p1@Gm4792
1.94e-53FFCP PHASE1:Mm9::chr5:112690744..112690755,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112690744..112690755, +
1.94e-53FFCP PHASE2:Mm9::chr5:112681470..112681483,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:112681470..112681483, -
1.94e-53FFCP PHASE1:Mm9::chr14:35413322..35413333,-#_e2893feaec9dd349ee48f2e56700d837p1@Opn4
1.94e-53FFCP PHASE2:Mm9::chr1:38092538..38092550,+#_e2893feaec9dd349ee48f2e56700d837p@chr1:38092538..38092550, +
1.94e-53FFCP PHASE1:Mm9::chr16:56204438..56204451,+#_e2893feaec9dd349ee48f2e56700d837p1@Impg2
1.94e-53FFCP PHASE2:Mm9::chr11:77532270..77532280,-#_e2893feaec9dd349ee48f2e56700d837p@chr11:77532270..77532280, -
1.94e-53FFCP PHASE2:Mm9::chr10:127668686..127668697,+#_e2893feaec9dd349ee48f2e56700d837p4@LOC100504989, p4@Timeless
1.94e-53FFCP PHASE1:Mm9::chr17:31818629..31818644,+#_e2893feaec9dd349ee48f2e56700d837p@chr17:31818629..31818644, +
1.94e-53FFCP PHASE2:Mm9::chr3:129525405..129525428,-#_e2893feaec9dd349ee48f2e56700d837p1@Rrh
1.94e-53FFCP PHASE1:Mm9::chr7:28282354..28282365,+#_e2893feaec9dd349ee48f2e56700d837p@chr7:28282354..28282365, +
1.94e-53FFCP PHASE1:Mm9::chr11:77532270..77532280,-#_e2893feaec9dd349ee48f2e56700d837p@chr11:77532270..77532280, -
1.94e-53FFCP PHASE2:Mm9::chr17:31818629..31818644,+#_e2893feaec9dd349ee48f2e56700d837p@chr17:31818629..31818644, +
1.94e-53FFCP PHASE1:Mm9::chr10:127668799..127668810,+#_e2893feaec9dd349ee48f2e56700d837p5@LOC100504989, p5@Timeless
1.94e-53FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_e2893feaec9dd349ee48f2e56700d837p1@Gm4792