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UBERON:0009494

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Name:pharyngeal arch mesenchymal region
Namespace:FANTOM
Definition:"A portion of mesenchymal tissue associated with an individual pharyngeal arch." [UBERON:cjm]
Synonyms: "branchial arch mesenchyme" EXACT [MP:0011262]
"pharyngeal arch mesenchyme" EXACT [UBERON:cjm]
Comments:Editor notes: this represents a part of the entire arch mesenchyme (UBERON:0010046), and is therefore a superclass of the individual arch mesenchyme classes. Alternate definition: primordial embryonic connective tissue associated with the branchial arches, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to facial and cranial nerve-associated structures. [MP:0011262]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004119(endoderm-derived structure),UBERON:0005253(head mesenchyme),UBERON:0007524(dense mesenchyme tissue),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0002539(pharyngeal arch),UBERON:0010046(entire pharyngeal arch associated mesenchyme)



Children

is a:UBERON:0010042 (1st arch mesenchyme)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009494 (pharyngeal arch mesenchymal region), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_620a136ddaeb98de45c8634a1f2768acp14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_620a136ddaeb98de45c8634a1f2768acp14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_1a33975f97cbfda11c7eb2e1f1a0cb3dp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_1a33975f97cbfda11c7eb2e1f1a0cb3dp11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_1a33975f97cbfda11c7eb2e1f1a0cb3dp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_1a33975f97cbfda11c7eb2e1f1a0cb3dp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_1a33975f97cbfda11c7eb2e1f1a0cb3dp13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_1a33975f97cbfda11c7eb2e1f1a0cb3dp13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_1a33975f97cbfda11c7eb2e1f1a0cb3dp12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_1a33975f97cbfda11c7eb2e1f1a0cb3dp12@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_28032f9bed98a384aed84bc9fcf5dcb9p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_28032f9bed98a384aed84bc9fcf5dcb9p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_28032f9bed98a384aed84bc9fcf5dcb9p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_28032f9bed98a384aed84bc9fcf5dcb9p14@MAB21L2
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_df202582fd3c3fc34e0f4ec84247c798p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_df202582fd3c3fc34e0f4ec84247c798p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_766d6d0f1d343f982dc2df8a98752b36p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_766d6d0f1d343f982dc2df8a98752b36p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_766d6d0f1d343f982dc2df8a98752b36p9@C17orf67
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_766d6d0f1d343f982dc2df8a98752b36p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_766d6d0f1d343f982dc2df8a98752b36p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_766d6d0f1d343f982dc2df8a98752b36+, p@chr8:57354278..57354286
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_0400a17246dcfc99d2069283a7d34498p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_0400a17246dcfc99d2069283a7d34498p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_a04bc0a271cdb319618788f324974561p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_a04bc0a271cdb319618788f324974561p7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_a04bc0a271cdb319618788f324974561p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_a04bc0a271cdb319618788f324974561p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_a04bc0a271cdb319618788f324974561p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_a04bc0a271cdb319618788f324974561p1@AK123925
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_427b7e1627c453d4381c6907dbc074c5p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_427b7e1627c453d4381c6907dbc074c5p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_427b7e1627c453d4381c6907dbc074c5p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_427b7e1627c453d4381c6907dbc074c5p@chr2:33519090..33519092, +
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_0a3c841c34153ddd39cebc3be1e6ef34p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_0a3c841c34153ddd39cebc3be1e6ef34-, p@chr8:57353779..57353790
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_0a3c841c34153ddd39cebc3be1e6ef34p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_0a3c841c34153ddd39cebc3be1e6ef34p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_0a3c841c34153ddd39cebc3be1e6ef34p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_0a3c841c34153ddd39cebc3be1e6ef34p@chr8:57353779..57353790, -
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_e706dbebead4f7ba9408e34d15997559p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_e706dbebead4f7ba9408e34d15997559p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_e706dbebead4f7ba9408e34d15997559p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_e706dbebead4f7ba9408e34d15997559p2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_e706dbebead4f7ba9408e34d15997559p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_e706dbebead4f7ba9408e34d15997559p2@TAS1R1
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_3948b33cc6e1e7be0c064853895829cfp@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_3948b33cc6e1e7be0c064853895829cfp@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_3948b33cc6e1e7be0c064853895829cfp@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_3948b33cc6e1e7be0c064853895829cfp@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_a3424243a1725d22ac7431f12ab261b8p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_a3424243a1725d22ac7431f12ab261b8p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_a3424243a1725d22ac7431f12ab261b8p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_a3424243a1725d22ac7431f12ab261b8p@chr9:125165007..125165016, +
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_2b930db954572e669553f7d51c625447p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_2b930db954572e669553f7d51c625447p4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_2b930db954572e669553f7d51c625447p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_2b930db954572e669553f7d51c625447p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_2b930db954572e669553f7d51c625447p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_2b930db954572e669553f7d51c625447p4@CPZ
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_d97565b678e6ee4ddbd4dfcad488a110p9@SIX1
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_d97565b678e6ee4ddbd4dfcad488a110p9@SIX1
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_4363aede665d9a198a28ffef8b6202b8p@chr6:134327986..134327991, -
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_4363aede665d9a198a28ffef8b6202b8p@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_69f5ab9cf05e59e4b1da23fb78e264dep@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_69f5ab9cf05e59e4b1da23fb78e264dep@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_69f5ab9cf05e59e4b1da23fb78e264de-, p@chr8:57353676..57353688
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_69f5ab9cf05e59e4b1da23fb78e264dep@chr8:57353676..57353688, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_25f9b4ebd4888971837ce54296353401p4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_25f9b4ebd4888971837ce54296353401p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_25f9b4ebd4888971837ce54296353401p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_25f9b4ebd4888971837ce54296353401p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_25f9b4ebd4888971837ce54296353401p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_25f9b4ebd4888971837ce54296353401-, p@chr5:19721484..19721507
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_43b1d492e7a2ab02121b534cdfb85e28p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_43b1d492e7a2ab02121b534cdfb85e28p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_43b1d492e7a2ab02121b534cdfb85e28p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_43b1d492e7a2ab02121b534cdfb85e28+, p@chr8:57354360..57354367
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_43b1d492e7a2ab02121b534cdfb85e28-, p@chr8:57353982..57353991
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_43b1d492e7a2ab02121b534cdfb85e28p@chr8:57353982..57353991, -
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_11f08bbbeb19188b5e8ffb267cb23760p7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_11f08bbbeb19188b5e8ffb267cb23760p7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_11f08bbbeb19188b5e8ffb267cb23760p10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_11f08bbbeb19188b5e8ffb267cb23760p10@ITGA8
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_1d0985765e1200ac5396954338f0d5ccp@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_1d0985765e1200ac5396954338f0d5ccp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_1d0985765e1200ac5396954338f0d5ccp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_1d0985765e1200ac5396954338f0d5ccp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_1d0985765e1200ac5396954338f0d5ccp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_1d0985765e1200ac5396954338f0d5ccp@chr22:28193943..28193956, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_391141a5c4f8da8210624d48757abbd2p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_391141a5c4f8da8210624d48757abbd2p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_81942027b5ffff582a887355e509bb30p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_81942027b5ffff582a887355e509bb30p18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_81942027b5ffff582a887355e509bb30p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_81942027b5ffff582a887355e509bb30p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_81942027b5ffff582a887355e509bb30p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_81942027b5ffff582a887355e509bb30-, p@chr8:57359975..57359992
4.2e-29FFCP PHASE2:Hg19::chr10:28033565..28033575,-#_200e1f738dfcc9399ab0b4740c16077ap@chr10:28033565..28033575, -
4.2e-29FFCP PHASE2:Hg19::chr1:6615468..6615485,+#_200e1f738dfcc9399ab0b4740c16077ap1@TAS1R1