Personal tools

Difference between revisions of "UBERON:0003129"

From FANTOM5_SSTAR

Jump to: navigation, search
 
Line 13: Line 13:
 
|located_in=
 
|located_in=
 
|name=skull
 
|name=skull
|namespace=
+
|namespace=FANTOM
 
|obo_creation_date=
 
|obo_creation_date=
 
|part_of=UBERON:0000033;;UBERON:0010323
 
|part_of=UBERON:0000033;;UBERON:0010323

Latest revision as of 08:38, 12 September 2014

Name:skull
Namespace:FANTOM
Definition:"Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://sourceforge.net/tracker/?func
Xrefs:
links:

BTO:0001295
EHDAA2:0000325
EMAPA:17680
FMA:46565
GAID:82
galen:Skull
MESH:A.02.835.232.781
ncithesaurus:Skull
OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA

SCTID:110530005
Synonyms: "cranial skeleton" RELATED []
"skeletal system of head" RELATED []
Comments:In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. Editor/AO notes: in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000075(subdivision of skeletal system),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0000033(head),UBERON:0010323(cranial skeletal system)



Children

part of:UBERON:0001825 (paranasal sinus),UBERON:0003128 (cranium),UBERON:0005744 (cranial conduit),UBERON:0011158 (primary subdivision of skull)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10195-103E6 (olfactory region, adult)
  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)

... further results Mouse (Mus musculus)

  • 10195-103E6 (olfactory region, adult)
  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003129 (skull), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:81314626..81314636, +
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:58022966..58022995, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_40d70c2e6c9363196e5764093c9b0a2ep18@Trpm3
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Grxcr1
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr16:93971325..93971337, -
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Otof
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_40d70c2e6c9363196e5764093c9b0a2ep13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_40d70c2e6c9363196e5764093c9b0a2ep7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Otog
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_40d70c2e6c9363196e5764093c9b0a2ep5@Tecta
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:58022966..58022995, -
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_40d70c2e6c9363196e5764093c9b0a2ep10@Otof
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_40d70c2e6c9363196e5764093c9b0a2ep6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:141605556..141605563, -
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_40d70c2e6c9363196e5764093c9b0a2ep7@Glt25d2
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_40d70c2e6c9363196e5764093c9b0a2ep5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_40d70c2e6c9363196e5764093c9b0a2ep2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Strc
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_40d70c2e6c9363196e5764093c9b0a2ep@chrX:154140781..154140788, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_40d70c2e6c9363196e5764093c9b0a2ep@chrX:154140781..154140788, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_40d70c2e6c9363196e5764093c9b0a2ep6@Tecta
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_40d70c2e6c9363196e5764093c9b0a2ep21@Espn
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:172843885..172843890, -
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42207397..42207408, -
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_40d70c2e6c9363196e5764093c9b0a2ep5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_40d70c2e6c9363196e5764093c9b0a2ep4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_40d70c2e6c9363196e5764093c9b0a2ep2@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_40d70c2e6c9363196e5764093c9b0a2e+, p@chr13:43699228..43699239
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_40d70c2e6c9363196e5764093c9b0a2ep2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:11599532..11599539, -
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_40d70c2e6c9363196e5764093c9b0a2ep11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:81327205..81327211, +
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_40d70c2e6c9363196e5764093c9b0a2ep5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_40d70c2e6c9363196e5764093c9b0a2ep9@Otof
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_40d70c2e6c9363196e5764093c9b0a2ep4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Tmc1