UBERON:0003129: Difference between revisions
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|name=skull | |name=skull | ||
|namespace= | |namespace= | ||
|def="Anatomical structure that is part of the head consisting entirely of cranium and mandible." [http://sourceforge.net/tracker/?func=detail&aid=2962656&group_id=76834&atid=1205376, Wikipedia:Skull] | |def="Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://sourceforge.net/tracker/?func=detail&aid=2962656&group_id=76834&atid=1205376, PMID:11523816, Wikipedia:Skull] | ||
|xref= | |xref=BTO:0001295;;EHDAA2:0000325;;EMAPA:17680;;FMA:46565;;GAID:82;;galen:Skull;;MESH:A.02.835.232.781;;ncithesaurus:Skull;;OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA;;SCTID:110530005 | ||
|is_a=UBERON: | |is_a=UBERON:0000075;;UBERON:0010314 | ||
|synonym="cranial skeleton" RELATED [];;"skeletal system of head" RELATED [] | |synonym="cranial skeleton" RELATED [];;"skeletal system of head" RELATED [] | ||
|comment=In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. | |comment=In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. Editor/AO notes: in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton | ||
|alt_id= | |alt_id= | ||
|disjoint_from= | |disjoint_from= | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim | |subset=uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} |
Revision as of 17:03, 26 June 2012
Name: | skull | ||
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Definition: | "Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." PMID:11523816, Wikipedia:Skull | ||
Xrefs: |
| ||
Synonyms: |
"cranial skeleton" RELATED [] "skeletal system of head" RELATED [] | ||
Comments: | In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. Editor/AO notes: in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton | ||
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000075(subdivision of skeletal system),UBERON:0010314(structure with developmental contribution from neural crest) |
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Children
part of: | UBERON:0001825 (paranasal sinus),UBERON:0003128 (cranium),UBERON:0005744 (cranial conduit),UBERON:0011158 (primary subdivision of skull) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10195-103E6 (olfactory region, adult)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
- 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
... further results Mouse (Mus musculus)
- 10195-103E6 (olfactory region, adult)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
- 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003129 (skull), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
1.87e-86 | FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr12:109905468..109905474, + |
1.87e-86 | FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_40d70c2e6c9363196e5764093c9b0a2e | p2@Gpr152 |
1.87e-86 | FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr11:11599532..11599539, - |
1.87e-86 | FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:172843885..172843890, - |
1.87e-86 | FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr6:29428397..29428407, - |
1.87e-86 | FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_40d70c2e6c9363196e5764093c9b0a2e | p3@Kncn |
1.87e-86 | FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_40d70c2e6c9363196e5764093c9b0a2e | p4@Kncn |
1.87e-86 | FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_40d70c2e6c9363196e5764093c9b0a2e | p1@Tmprss7 |
1.87e-86 | FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:47293496..47293510, - |
1.87e-86 | FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:94627290..94627299, - |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_40d70c2e6c9363196e5764093c9b0a2e | p7@Tecta |
1.87e-86 | FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_40d70c2e6c9363196e5764093c9b0a2e | p2@Gpr152 |
1.87e-86 | FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr8:13414266..13414279, + |
1.87e-86 | FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:78257454..78257465, + |
1.87e-86 | FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Slc26a5 |
1.87e-86 | FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr7:29733825..29733837, - |
1.87e-86 | FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr7:133957514..133957529, + |
1.87e-86 | FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_40d70c2e6c9363196e5764093c9b0a2e | p18@Trpm3 |
1.87e-86 | FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr2:75320183..75320189, + |
1.87e-86 | FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:20649897..20649907, + |
1.87e-86 | FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr17:13983198..13983203, + |
1.87e-86 | FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:43454162..43454170, - |
1.87e-86 | FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr18:81327205..81327211, + |
1.87e-86 | FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:81012915..81012923, + |
1.87e-86 | FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr6:113251606..113251613, + |
1.87e-86 | FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr2:170417150..170417155, - |
1.87e-86 | FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr17:27252925..27252939, + |
1.87e-86 | FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_40d70c2e6c9363196e5764093c9b0a2e | p1@Otogl |
1.87e-86 | FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr8:94180607..94180619, - |
1.87e-86 | FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr2:170417150..170417155, - |
1.87e-86 | FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:58283583..58283607, - |
1.87e-86 | FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:182528388..182528403, + |
1.87e-86 | FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_40d70c2e6c9363196e5764093c9b0a2e | p7@A730017C20Rik |
1.87e-86 | FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr4:133802857..133802884, + |
1.87e-86 | FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr19:10536797..10536802, - |
1.87e-86 | FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr17:13983160..13983167, + |
1.87e-86 | FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_40d70c2e6c9363196e5764093c9b0a2e | p3@Otogl |
1.87e-86 | FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:154459231..154459240, + |
1.87e-86 | FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_40d70c2e6c9363196e5764093c9b0a2e | p1@Gm1322 |
1.87e-86 | FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_40d70c2e6c9363196e5764093c9b0a2e | p10@Sec11a |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_40d70c2e6c9363196e5764093c9b0a2e | p6@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:100724698..100724706, + |
1.87e-86 | FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:102297728..102297742, + |
1.87e-86 | FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:35012425..35012439, + |
1.87e-86 | FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_40d70c2e6c9363196e5764093c9b0a2e | p41@Cacnb2 |
1.87e-86 | FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:89215319..89215330, + |
1.87e-86 | FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr11:8405038..8405048, - |
1.87e-86 | FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Slc26a5 |
1.87e-86 | FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:172843796..172843799, - |
1.87e-86 | FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_40d70c2e6c9363196e5764093c9b0a2e | p4@Chrna10 |
1.87e-86 | FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr12:13572961..13572974, + |
1.87e-86 | FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr16:93971357..93971363, - |
1.87e-86 | FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:43699228..43699239, + |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_40d70c2e6c9363196e5764093c9b0a2e | p5@Tecta |
1.87e-86 | FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:58022966..58022995, - |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:42207397..42207408, - |
1.87e-86 | FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Strc |
1.87e-86 | FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@uc007rhb.1 |
1.87e-86 | FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:182528388..182528403, + |
1.87e-86 | FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:154459184..154459195, + |
1.87e-86 | FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Otof |
1.87e-86 | FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr5:144115382..144115389, + |
1.87e-86 | FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_40d70c2e6c9363196e5764093c9b0a2e | p1@Tomt |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:42206784..42206793, - |
1.87e-86 | FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:41495920..41495928, - |
1.87e-86 | FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_40d70c2e6c9363196e5764093c9b0a2e | p3@Gm1322 |
1.87e-86 | FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr4:133802857..133802884, + |
1.87e-86 | FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr4:154208086..154208123, + |
1.87e-86 | FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Tmprss3 |
1.87e-86 | FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr11:114603036..114603048, + |
1.87e-86 | FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:50968647..50968668, - |
1.87e-86 | FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:65641779..65641790, + |
1.87e-86 | FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Strc |
1.87e-86 | FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr16:93971367..93971379, - |
1.87e-86 | FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr11:4689837..4689845, - |
1.87e-86 | FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr8:13425469..13425503, + |
1.87e-86 | FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr17:13983095..13983100, + |
1.87e-86 | FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr5:72652660..72652667, + |
1.87e-86 | FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_40d70c2e6c9363196e5764093c9b0a2e | p9@Ankrd24 |
1.87e-86 | FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr10:67371994..67372010, + |
1.87e-86 | FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr18:66033526..66033539, - |
1.87e-86 | FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:89215333..89215341, + |
1.87e-86 | FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_40d70c2e6c9363196e5764093c9b0a2e | p3@Ptprq |
1.87e-86 | FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:31585340..31585360, + |
1.87e-86 | FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:102297747..102297765, + |
1.87e-86 | FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr18:81314626..81314636, + |
1.87e-86 | FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:97806034..97806061, + |
1.87e-86 | FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_40d70c2e6c9363196e5764093c9b0a2e | p9@Otof |
1.87e-86 | FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr12:13572961..13572974, + |
1.87e-86 | FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:63099970..63099980, - |
1.87e-86 | FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_40d70c2e6c9363196e5764093c9b0a2e | p4@Otogl |
1.87e-86 | FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr19:10536767..10536777, - |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:31585340..31585360, + |
1.87e-86 | FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_40d70c2e6c9363196e5764093c9b0a2e | p6@Jag1 |
1.87e-86 | FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_40d70c2e6c9363196e5764093c9b0a2e | p12@B3galt5 |
1.87e-86 | FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr18:38104702..38104718, - |
1.87e-86 | FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr11:94371127..94371139, - |
1.87e-86 | FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:35012397..35012405, + |
1.87e-86 | FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr12:13508015..13508019, + |