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{{UBERON
{{UBERON
|id=UBERON:0010913
|alt_id=
|name=vertebral element
|namespace=
|def="Skeletal element that forms around the notochord and is part of the vertebral column." [VSAO:0000184]
|xref=VHOG:0001143;;VSAO:0000184
|is_a=UBERON:0004765
|synonym=
|comment=Note that Uberon includes a distinct subclass for bony vertebra
|comment=Note that Uberon includes a distinct subclass for bony vertebra
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Skeletal element that forms around the notochord and is part of the vertebral column." [VSAO:0000184]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0003089
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010913
|is_a=UBERON:0004120 ;;UBERON:0004765
|is_obsolete=
|located_in=
|located_in=
|name=vertebral element
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001130
|part_of=UBERON:0001130
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=VHOG:0001143;;VSAO:0000184
}}
}}

Latest revision as of 18:10, 12 September 2014

Name:vertebral element
Namespace:FANTOM
Definition:"Skeletal element that forms around the notochord and is part of the vertebral column." [VSAO:0000184]
Xrefs:
links:

VHOG:0001143

VSAO:0000184
Comments:Note that Uberon includes a distinct subclass for bony vertebra

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0004765(skeletal element)
develops_from:UBERON:0003089(sclerotome)
part_of:UBERON:0001130(vertebral column)



Children

is a:UBERON:0002412 (vertebra),UBERON:0011094 (vertebra cartilage element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010913 (vertebral element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results