CL:0002371: Difference between revisions
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|id=CL:0002371 | |id=CL:0002371 | ||
|name=somatic cell | |name=somatic cell | ||
|namespace=efo | |namespace=cell;;efo | ||
|def="A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell)." [GOC:tfm, ISBN:0721662544] | |def="A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell)." [GOC:tfm, ISBN:0721662544] | ||
|xref=BTO:0001268;;FMA:72300;;WBbt:0008378 | |xref=BTO:0001268;;FMA:72300;;WBbt:0008378 | ||
|is_a=CL: | |is_a=CL:0000003;;EFO:0000324 | ||
|synonym= | |synonym= | ||
|comment= | |comment= | ||
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|obo_creation_date=2010-09-24T09:44:42Z | |obo_creation_date=2010-09-24T09:44:42Z | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
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|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:27, 26 June 2012
| Name: | somatic cell | ||
|---|---|---|---|
| Namespace: | cell;;efo | ||
| Definition: | "A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell)." [GOC:tfm, ISBN:0721662544] | ||
| Xrefs: |
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| Created by: | tmeehan | ||
| Creation date: | 2010-09-24T09:44:42Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000003(native cell),EFO:0000324(cell type) |
|---|
Children
| is a: | CL:0000068 (duct epithelial cell),CL:0000075 (columnar/cuboidal epithelial cell),CL:0000079 (stratified epithelial cell),CL:0000083 (epithelial cell of pancreas),CL:0000098 (sensory epithelial cell),CL:0000150 (glandular epithelial cell),CL:0000182 (hepatocyte),CL:0000186 (myofibroblast cell),CL:0000187 (muscle cell),CL:0000188 (cell of skeletal muscle),CL:0000244 (transitional epithelial cell),CL:0000349 (extraembryonic cell),CL:0000666 (fenestrated cell),CL:0000680 (muscle precursor cell),CL:0000723 (somatic stem cell),CL:0000988 (hematopoietic cell),CL:0002076 (endo-epithelial cell),CL:0002077 (ecto-epithelial cell),CL:0002078 (meso-epithelial cell),CL:0002222 (vertebrate lens cell),CL:0002319 (neural cell),CL:0002320 (connective tissue cell),CL:0002327 (mammary gland epithelial cell),CL:0002494 (cardiocyte),CL:0002535 (epithelial cell of cervix),CL:0002546 (embryonic blood vessel endothelial progenitor cell),CL:0002559 (hair follicle cell),CL:0009004 (retinal cell),CL:1000415 (epithelial cell of gall bladder),CL:1000497 (kidney cell) |
|---|---|
| disjoint from: | CL:0000039 (germ line cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
- 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
- 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
- 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10413-106B8 (glioma cell line:GI-1)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
... further results Mouse (Mus musculus)
- 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
- 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
- 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
- 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10413-106B8 (glioma cell line:GI-1)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002371 (somatic cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results for this cluster
