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MCL coexpression mm9:1251: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000219!2.91e-14!54;CL:0002031!1.18e-13!25;CL:0002320!1.88e-12!46;CL:0000134!1.88e-12!46;CL:0000738!1.05e-10!17;CL:0002087!1.05e-10!17;CL:0000548!3.53e-10!115;CL:0000255!3.53e-10!115;CL:0000723!2.73e-09!91;CL:0000048!2.73e-09!91;CL:0000838!3.96e-09!12;CL:0000034!8.39e-09!97;CL:0002371!1.25e-08!118;CL:0000542!1.36e-08!13;CL:0000051!1.36e-08!13;CL:0000988!1.40e-08!32;CL:0002032!1.40e-08!32;CL:0000037!1.40e-08!32;CL:0000566!1.40e-08!32;CL:0000837!1.40e-08!32;CL:0000084!1.54e-08!11;CL:0000827!1.54e-08!11;CL:0002242!1.12e-07!16;CL:0000791!1.89e-07!9;CL:0000789!1.89e-07!9;CL:0002420!1.89e-07!9;CL:0002419!1.89e-07!9;CL:0000790!1.89e-07!9;CL:0000624!9.33e-07!8
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002384!1.88e-12!46;UBERON:0002193!1.99e-09!48;UBERON:0002405!1.99e-09!48;UBERON:0002390!8.60e-09!45;UBERON:0003061!8.60e-09!45
}}
}}

Revision as of 16:35, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:79351411..79351412,+p@chr10:79351411..79351412
+
Mm9::chr12:76732358..76732367,-p2@ENSMUST00000164240
Mm9::chr18:22477492..22477500,+p@chr18:22477492..22477500
+
Mm9::chr19:12921264..12921271,+p1@ENSMUST00000164001
Mm9::chr4:8383704..8383705,-p1@ENSMUST00000118311
Mm9::chr7:135270306..135270310,+p@chr7:135270306..135270310
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
motile cell2.91e-1454
hematopoietic lineage restricted progenitor cell1.18e-1325
connective tissue cell1.88e-1246
mesenchymal cell1.88e-1246
leukocyte1.05e-1017
nongranular leukocyte1.05e-1017
animal cell3.53e-10115
eukaryotic cell3.53e-10115
somatic stem cell2.73e-0991
multi fate stem cell2.73e-0991
lymphoid lineage restricted progenitor cell3.96e-0912
stem cell8.39e-0997
somatic cell1.25e-08118
lymphocyte1.36e-0813
common lymphoid progenitor1.36e-0813
hematopoietic cell1.40e-0832
hematopoietic oligopotent progenitor cell1.40e-0832
hematopoietic stem cell1.40e-0832
angioblastic mesenchymal cell1.40e-0832
hematopoietic multipotent progenitor cell1.40e-0832
T cell1.54e-0811
pro-T cell1.54e-0811
nucleate cell1.12e-0716
mature alpha-beta T cell1.89e-079
alpha-beta T cell1.89e-079
immature T cell1.89e-079
mature T cell1.89e-079
immature alpha-beta T cell1.89e-079
CD4-positive, alpha-beta T cell9.33e-078

Uber Anatomy
Ontology termp-valuen
connective tissue1.88e-1246
hemolymphoid system1.99e-0948
immune system1.99e-0948
hematopoietic system8.60e-0945
blood island8.60e-0945


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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