Personal tools

MCL coexpression mm9:2022: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0.156721203568719,0.539200247149777,0.439512459450826,0.872833295894444,1.01416355441807,0.261257543215815,0.234639609902564,-0.05109589206082,0.0286026095447835,0.066015043122264,0,0.0219761645770208,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,0.046168240742642,0.0204261414970744,0,0.0772930256699151,0.036248948056458,0.41255247326347,0.306885499372084,0.210988585265102,0.299473921884882,0.228499850177523,0.125725381225285,0.0292963710022192,0.0966984673430685,0,0.206057513534433,0.216899039638168,0.107005485107592,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.051717285391284,-0.0564985933697085,-0.07746658125413,-0.07746658125413,0.00891695757691855,0.0324642750229693,-0.0437733076742035,-0.0490167420105855,-0.07746658125413,-0.0437855801471558,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.0227560417554767,-0.07746658125413,0.198113396314675,0.235974981913246,0.264334176976267,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,0,0.11693046144117,0.0870960208443009,0.0274990668782,0.120033384610194,0.0741856044141052,0.0465567008704061,0.131748018332754,0.0792791468156851,-0.00198003408671943,0,0.045058151337131,0.0847156983688755,0.197167980701037,0.123925313246823,0,0.190491970546478,0.327466262382121,0.119700686060694,0.0516187555346981,0.0579298015653407,0.113112692487464,-0.0468435891033903,-0.07746658125413,0.0770967542203538,0,0,0.0109671818512868,0,0,0,-0.07746658125413,-0.07746658125413,-0.07746658125413,0.219701554563385,-0.07746658125413,-0.056503227240332,-0.0703362688298955,-0.07746658125413,-0.07746658125413,-0.07746658125413,0.0983695190276536,-0.07746658125413,0.0325709487717886,0.0102669007596434,-0.0155469671257356,-0.0058235142988329,-0.059233993301932,-0.05332557889104,-0.00799964676667275,0.097266874818303,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.0341369360651923,-0.07746658125413,0.141385918892153,0.403562170985131,0.373982879232087,0.242713737259688,-0.07746658125413,-0.07746658125413,-0.0514910924945645,0.167447598507104,0.375343021879513,0.231311688380805,0.182264238536694,0.039621476976509,0.090596272613075,0.140591600733283,-0.0191346926318274,-0.0520048166070815,-0.028539097554683,0.119153642071697,0.216169873136811,0.520955964160809,0.54747582761141,0.643041731301812,0.838460641248275,0.813385408785293,0.814765061320783,0.208294516644914,0.057554972212666,0,-0.0119939360972436,0.0540859905814258,-0.07746658125413,0,-0.07746658125413,0.0344511442653147,-0.07746658125413,-0.07746658125413,-0.07746658125413,0,0,-0.0410237758051068,-0.00529082135357305,0.000358966627476254,-0.0190740380295643,0.0054622936685607,0.102356832981449,0,0.0739772316792867,0,0.03706132251119,0,0.0755106663481923,0.0431917728518314,0.07018778340487,0.146597332412339,0.383738989009715,0.306745574627534,0,0,0.0732343414618978,0.0797901069290224,0.128471858458514,0.105490962264336,0.317355648347951,0.176992566790213,0.122314349752431,0.072481178301674,0.154689199807726,0.285171072431105,0.28100497061478,0.335156615067667,0,-0.000817633177577902,0.0864250609681375,0.040250349638994,-0.0352290440564104,0.0614227144786636,-0.0044935484181705,-0.0212947606814919,-0.0181693191080067,0.0351538908396659,0,0,-0.00547263096239525,-0.07746658125413,-0.037359017809122,-0.0305496937232828,-0.0282094652511339,-0.0225598847567457,-0.044838248369296,-0.0247861981242899,-0.0331395422650373,0,0.0132975914955338,0.127664478140194,0.0358300855065507,0.206223524727078,-0.00918455129902635,0.0110950427204482,0,0,-0.0482392408996606,-0.0427864603723602,0,0,-0.0456807298266161,0,0,0,-0.0408828992790637,0.0293361777120366,-0.07746658125413,-0.07746658125413,0.105311279539128,0.0179615762723677,0.144790163008998,0.129555537027717,0,-0.0284446443703073,0.059546782971018,0.0478504408419046,0.172859150615042,0.114734172472902,0.104142026169735,0.184375297662356,0.0536938096207415,0.187502653982147,0,0.255042496539323,-0.00827604644492975,0.0154739565867039,-0.0153595365980804,0.0098409958615697,0.184464842530807,0.108027629596524,0,0,0.0233144246322886,0.015947073530248,0.00728130896298905,0.0320505396555813,0.0456078491128597,0.174307286713673,0.176234141904199,0.0764263786905555,0.0353016717593272,0.18306078667504,0.12676580901887,0,0,0.0394723391916305,0.062987970011122,0.0835181868671428,0,-0.07746658125413,0.127190029615486,0.0325279368730632,0,-0.0137535471663851,0.0863125801472057,0.134634972293871,0.283611123747793,0.180980400255573,-0.0432120785722598,0,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.0327298370637946,-0.0433776537233549,-0.07746658125413,-0.07746658125413,0.250517797983219,0.0608686694491832,0.0143502813099593,0.0222709268946923,0.0124082055539023,0,0.100560203594715,0.0893549665508435,0.174236796957584,0.205659417960713,0.141397063199447,-0.07746658125413,-0.0472089678299582,-0.07746658125413,-0.0388823778260712,-0.0275710924660775,-0.07746658125413,-0.0533705578259755,0,-0.0361243862130571,0,-0.0604419118182635,0,0.113990974502719,0.0405695412953027,0.0399339691786154,0.0158816668864733,0.0240558574403138,0.0649544868868682,0.0052190271178938,0.0208870423994129,0.0614926263248134,0.0384953473587026,0.00873116063976455,0,-0.0318523288260754,0.094466897781656,0,0.0160515587390427,-0.0437666123281342,0.0852129203561783,0,0.0575840644045165,0.136559207986444,0.210185786538457,0,0.00475821399772338,0.0126353074883448,0.0128199210801893,0.113310586729352,-0.00774850310767395,-0.0297996743741047,-0.0247251031338871,0.062627313284994,0.0933345541303255,0.156820808390384,0,0.0793830141833633,0.0346864148784672,0.0542300691744554,0.0648097504839994,0.0871588832444397,0.0381415155990541,-0.0550534927306915,-0.0227662345004551,0.0206505851073781,-0.0079597677465141,-0.0401894538003778,-0.0144784208949259,0.00463305093264263,-0.00412542855878362,0.0052353170194279,0,-0.00253602287140491,-0.0253181251547097,-0.0134497162942195,-0.0351719948988672,-0.00863810558119405,0.0515207484998133,-0.0261628183496528,0,-0.0256592317753244,0.0143305242904354,0.035061427043622,0.0192546604693742,0.0337838865770506,0.0178030828447368,-0.00297548053060776,-0.0285568732155832,-0.0319089873764389,0.0845133161669775,0.0379975007231075,-0.0352014889894827,-0.0394581371746347,0.0091037312432724,-0.07746658125413
|coexpression_dpi_cluster_scores_median=0.156721203568719,0.539200247149777,0.439512459450826,0.872833295894444,1.01416355441807,0.261257543215815,0.234639609902564,-0.05109589206082,0.0286026095447835,0.066015043122264,0,0.0219761645770208,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,0.046168240742642,0.0204261414970744,0,0.0772930256699151,0.036248948056458,0.41255247326347,0.306885499372084,0.210988585265102,0.299473921884882,0.228499850177523,0.125725381225285,0.0292963710022192,0.0966984673430685,0,0.206057513534433,0.216899039638168,0.107005485107592,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.051717285391284,-0.0564985933697085,-0.07746658125413,-0.07746658125413,0.00891695757691855,0.0324642750229693,-0.0437733076742035,-0.0490167420105855,-0.07746658125413,-0.0437855801471558,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.0227560417554767,-0.07746658125413,0.198113396314675,0.235974981913246,0.264334176976267,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.07746658125413,0,0.11693046144117,0.0870960208443009,0.0274990668782,0.120033384610194,0.0741856044141052,0.0465567008704061,0.131748018332754,0.0792791468156851,-0.00198003408671943,0,0.045058151337131,0.0847156983688755,0.197167980701037,0.123925313246823,0,0.190491970546478,0.327466262382121,0.119700686060694,0.0516187555346981,0.0579298015653407,0.113112692487464,-0.0468435891033903,-0.07746658125413,0.0770967542203538,0,0,0.0109671818512868,0,0,0,-0.07746658125413,-0.07746658125413,-0.07746658125413,0.219701554563385,-0.07746658125413,-0.056503227240332,-0.0703362688298955,-0.07746658125413,-0.07746658125413,-0.07746658125413,0.0983695190276536,-0.07746658125413,0.0325709487717886,0.0102669007596434,-0.0155469671257356,-0.0058235142988329,-0.059233993301932,-0.05332557889104,-0.00799964676667275,0.097266874818303,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.0341369360651923,-0.07746658125413,0.141385918892153,0.403562170985131,0.373982879232087,0.242713737259688,-0.07746658125413,-0.07746658125413,-0.0514910924945645,0.167447598507104,0.375343021879513,0.231311688380805,0.182264238536694,0.039621476976509,0.090596272613075,0.140591600733283,-0.0191346926318274,-0.0520048166070815,-0.028539097554683,0.119153642071697,0.216169873136811,0.520955964160809,0.54747582761141,0.643041731301812,0.838460641248275,0.813385408785293,0.814765061320783,0.208294516644914,0.057554972212666,0,-0.0119939360972436,0.0540859905814258,-0.07746658125413,0,-0.07746658125413,0.0344511442653147,-0.07746658125413,-0.07746658125413,-0.07746658125413,0,0,-0.0410237758051068,-0.00529082135357305,0.000358966627476254,-0.0190740380295643,0.0054622936685607,0.102356832981449,0,0.0739772316792867,0,0.03706132251119,0,0.0755106663481923,0.0431917728518314,0.07018778340487,0.146597332412339,0.383738989009715,0.306745574627534,0,0,0.0732343414618978,0.0797901069290224,0.128471858458514,0.105490962264336,0.317355648347951,0.176992566790213,0.122314349752431,0.072481178301674,0.154689199807726,0.285171072431105,0.28100497061478,0.335156615067667,0,-0.000817633177577902,0.0864250609681375,0.040250349638994,-0.0352290440564104,0.0614227144786636,-0.0044935484181705,-0.0212947606814919,-0.0181693191080067,0.0351538908396659,0,0,-0.00547263096239525,-0.07746658125413,-0.037359017809122,-0.0305496937232828,-0.0282094652511339,-0.0225598847567457,-0.044838248369296,-0.0247861981242899,-0.0331395422650373,0,0.0132975914955338,0.127664478140194,0.0358300855065507,0.206223524727078,-0.00918455129902635,0.0110950427204482,0,0,-0.0482392408996606,-0.0427864603723602,0,0,-0.0456807298266161,0,0,0,-0.0408828992790637,0.0293361777120366,-0.07746658125413,-0.07746658125413,0.105311279539128,0.0179615762723677,0.144790163008998,0.129555537027717,0,-0.0284446443703073,0.059546782971018,0.0478504408419046,0.172859150615042,0.114734172472902,0.104142026169735,0.184375297662356,0.0536938096207415,0.187502653982147,0,0.255042496539323,-0.00827604644492975,0.0154739565867039,-0.0153595365980804,0.0098409958615697,0.184464842530807,0.108027629596524,0,0,0.0233144246322886,0.015947073530248,0.00728130896298905,0.0320505396555813,0.0456078491128597,0.174307286713673,0.176234141904199,0.0764263786905555,0.0353016717593272,0.18306078667504,0.12676580901887,0,0,0.0394723391916305,0.062987970011122,0.0835181868671428,0,-0.07746658125413,0.127190029615486,0.0325279368730632,0,-0.0137535471663851,0.0863125801472057,0.134634972293871,0.283611123747793,0.180980400255573,-0.0432120785722598,0,-0.07746658125413,-0.07746658125413,-0.07746658125413,-0.0327298370637946,-0.0433776537233549,-0.07746658125413,-0.07746658125413,0.250517797983219,0.0608686694491832,0.0143502813099593,0.0222709268946923,0.0124082055539023,0,0.100560203594715,0.0893549665508435,0.174236796957584,0.205659417960713,0.141397063199447,-0.07746658125413,-0.0472089678299582,-0.07746658125413,-0.0388823778260712,-0.0275710924660775,-0.07746658125413,-0.0533705578259755,0,-0.0361243862130571,0,-0.0604419118182635,0,0.113990974502719,0.0405695412953027,0.0399339691786154,0.0158816668864733,0.0240558574403138,0.0649544868868682,0.0052190271178938,0.0208870423994129,0.0614926263248134,0.0384953473587026,0.00873116063976455,0,-0.0318523288260754,0.094466897781656,0,0.0160515587390427,-0.0437666123281342,0.0852129203561783,0,0.0575840644045165,0.136559207986444,0.210185786538457,0,0.00475821399772338,0.0126353074883448,0.0128199210801893,0.113310586729352,-0.00774850310767395,-0.0297996743741047,-0.0247251031338871,0.062627313284994,0.0933345541303255,0.156820808390384,0,0.0793830141833633,0.0346864148784672,0.0542300691744554,0.0648097504839994,0.0871588832444397,0.0381415155990541,-0.0550534927306915,-0.0227662345004551,0.0206505851073781,-0.0079597677465141,-0.0401894538003778,-0.0144784208949259,0.00463305093264263,-0.00412542855878362,0.0052353170194279,0,-0.00253602287140491,-0.0253181251547097,-0.0134497162942195,-0.0351719948988672,-0.00863810558119405,0.0515207484998133,-0.0261628183496528,0,-0.0256592317753244,0.0143305242904354,0.035061427043622,0.0192546604693742,0.0337838865770506,0.0178030828447368,-0.00297548053060776,-0.0285568732155832,-0.0319089873764389,0.0845133161669775,0.0379975007231075,-0.0352014889894827,-0.0394581371746347,0.0091037312432724,-0.07746658125413
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000540!5.14e-07!33;CL:0000047!5.14e-07!33;CL:0000031!5.14e-07!33;CL:0000404!5.14e-07!33
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004121!3.89e-14!95;UBERON:0000924!3.89e-14!95;UBERON:0006601!3.89e-14!95;UBERON:0000160!3.05e-13!31;UBERON:0010371!3.03e-12!73;UBERON:0000477!1.86e-11!244;UBERON:0002346!3.03e-11!64;UBERON:0003075!3.03e-11!64;UBERON:0007284!3.03e-11!64;UBERON:0011216!1.41e-10!194;UBERON:0005409!1.02e-09!47;UBERON:0001017!2.55e-09!73;UBERON:0003056!1.02e-08!49;UBERON:0001016!2.42e-08!75;UBERON:0001242!3.00e-08!13;UBERON:0000060!3.00e-08!13;UBERON:0001262!3.00e-08!13;UBERON:0004786!3.00e-08!13;UBERON:0000344!4.14e-08!15;UBERON:0000033!6.72e-08!13;UBERON:0010314!1.08e-07!92;UBERON:0000020!1.41e-07!12;UBERON:0001032!1.41e-07!12;UBERON:0004456!1.41e-07!12;UBERON:0005085!2.74e-07!13;UBERON:0000481!2.77e-07!230;UBERON:0000485!3.87e-07!11;UBERON:0001444!4.63e-07!11
}}
}}

Revision as of 17:48, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:109513528..109513539,-p6@Ccdc85c
Mm9::chr12:109513548..109513561,-p2@Ccdc85c
Mm9::chr12:109513562..109513618,-p1@Ccdc85c
Mm9::chr4:154320552..154320555,-p@chr4:154320552..154320555
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
neuron5.14e-0733
neuronal stem cell5.14e-0733
neuroblast5.14e-0733
electrically signaling cell5.14e-0733

Uber Anatomy
Ontology termp-valuen
ectoderm-derived structure3.89e-1495
ectoderm3.89e-1495
presumptive ectoderm3.89e-1495
intestine3.05e-1331
ecto-epithelium3.03e-1273
anatomical cluster1.86e-11244
neurectoderm3.03e-1164
neural plate3.03e-1164
presumptive neural plate3.03e-1164
organ system subdivision1.41e-10194
gastrointestinal system1.02e-0947
central nervous system2.55e-0973
pre-chordal neural plate1.02e-0849
nervous system2.42e-0875
intestinal mucosa3.00e-0813
anatomical wall3.00e-0813
wall of intestine3.00e-0813
gastrointestinal system mucosa3.00e-0813
mucosa4.14e-0815
head6.72e-0813
structure with developmental contribution from neural crest1.08e-0792
sense organ1.41e-0712
sensory system1.41e-0712
entire sense organ system1.41e-0712
ectodermal placode2.74e-0713
multi-tissue structure2.77e-07230
simple columnar epithelium3.87e-0711
subdivision of head4.63e-0711


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:2022&oldid=2154203"