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MCL coexpression mm9:942: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000219!1.91e-15!54;CL:0002320!5.14e-15!46;CL:0000134!5.14e-15!46;CL:0002031!1.45e-12!25;CL:0000988!8.90e-12!32;CL:0002032!8.90e-12!32;CL:0000037!8.90e-12!32;CL:0000566!8.90e-12!32;CL:0000837!8.90e-12!32;CL:0000723!1.27e-11!91;CL:0000048!1.27e-11!91;CL:0000034!2.00e-11!97;CL:0000548!1.38e-10!115;CL:0000255!1.38e-10!115;CL:0000738!1.02e-09!17;CL:0002087!1.02e-09!17;CL:0002371!5.38e-09!118;CL:0002242!7.01e-09!16;CL:0000542!8.19e-09!13;CL:0000051!8.19e-09!13;CL:0000838!1.30e-08!12;CL:0000084!3.41e-08!11;CL:0000827!3.41e-08!11;CL:0000791!4.59e-07!9;CL:0000789!4.59e-07!9;CL:0002420!4.59e-07!9;CL:0002419!4.59e-07!9;CL:0000790!4.59e-07!9
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002384!5.14e-15!46;UBERON:0002193!9.23e-08!48;UBERON:0002405!9.23e-08!48;UBERON:0002390!1.98e-07!45;UBERON:0003061!1.98e-07!45
}}
}}

Revision as of 21:29, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:101540355..101540356,+p1@ENSMUST00000077495
Mm9::chr17:45504681..45504694,+p@chr17:45504681..45504694
+
Mm9::chr3:157551885..157551892,-p@chr3:157551885..157551892
-
Mm9::chr3:37613630..37613631,+p1@ENSMUST00000077976
p1@ENSMUST00000116115
Mm9::chr5:110526503..110526511,-p@chr5:110526503..110526511
-
Mm9::chr6:66661639..66661644,+p@chr6:66661639..66661644
+
Mm9::chr7:31048193..31048198,+p1@ENSMUST00000118272
Mm9::chrX:91269151..91269161,+p1@ENSMUST00000119319


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
motile cell1.91e-1554
connective tissue cell5.14e-1546
mesenchymal cell5.14e-1546
hematopoietic lineage restricted progenitor cell1.45e-1225
hematopoietic cell8.90e-1232
hematopoietic oligopotent progenitor cell8.90e-1232
hematopoietic stem cell8.90e-1232
angioblastic mesenchymal cell8.90e-1232
hematopoietic multipotent progenitor cell8.90e-1232
somatic stem cell1.27e-1191
multi fate stem cell1.27e-1191
stem cell2.00e-1197
animal cell1.38e-10115
eukaryotic cell1.38e-10115
leukocyte1.02e-0917
nongranular leukocyte1.02e-0917
somatic cell5.38e-09118
nucleate cell7.01e-0916
lymphocyte8.19e-0913
common lymphoid progenitor8.19e-0913
lymphoid lineage restricted progenitor cell1.30e-0812
T cell3.41e-0811
pro-T cell3.41e-0811
mature alpha-beta T cell4.59e-079
alpha-beta T cell4.59e-079
immature T cell4.59e-079
mature T cell4.59e-079
immature alpha-beta T cell4.59e-079

Uber Anatomy
Ontology termp-valuen
connective tissue5.14e-1546
hemolymphoid system9.23e-0848
immune system9.23e-0848
hematopoietic system1.98e-0745
blood island1.98e-0745


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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