FFCP PHASE1:Hg19::chr17:57784918..57784932,+: Difference between revisions
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|ontology_enrichment_celltype=CL:0000738!1.36e-32!140;CL:0002087!2.15e-26!119;CL:0002031!9.16e-26!124;CL:0000037!2.61e-25!172;CL:0000566!2.61e-25!172;CL:0000766!2.93e-25!76;CL:0002057!7.33e-24!42;CL:0002032!1.24e-22!165;CL:0000837!1.24e-22!165;CL:0000988!5.26e-22!182;CL:0000860!2.02e-21!45;CL:0000557!2.10e-21!71;CL:0000839!3.21e-19!70;CL:0002194!1.29e-18!63;CL:0000576!1.29e-18!63;CL:0000040!1.29e-18!63;CL:0000559!1.29e-18!63;CL:0002009!1.58e-18!65;CL:0000763!6.97e-15!112;CL:0000049!6.97e-15!112;CL:0000542!1.18e-07!53;CL:0000051!1.18e-07!53;CL:0000838!1.96e-07!52;CL:0002393!9.39e-07!9;CL:0002397!9.39e-07!9 | |ontology_enrichment_celltype=CL:0000738!1.36e-32!140;CL:0002087!2.15e-26!119;CL:0002031!9.16e-26!124;CL:0000037!2.61e-25!172;CL:0000566!2.61e-25!172;CL:0000766!2.93e-25!76;CL:0002057!7.33e-24!42;CL:0002032!1.24e-22!165;CL:0000837!1.24e-22!165;CL:0000988!5.26e-22!182;CL:0000860!2.02e-21!45;CL:0000557!2.10e-21!71;CL:0000839!3.21e-19!70;CL:0002194!1.29e-18!63;CL:0000576!1.29e-18!63;CL:0000040!1.29e-18!63;CL:0000559!1.29e-18!63;CL:0002009!1.58e-18!65;CL:0000763!6.97e-15!112;CL:0000049!6.97e-15!112;CL:0000542!1.18e-07!53;CL:0000051!1.18e-07!53;CL:0000838!1.96e-07!52;CL:0002393!9.39e-07!9;CL:0002397!9.39e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.37e-34;33!CL:0002057;3.37e-34;33!CL:0000473;5.59e-26;39!CL:0000234;5.59e-26;39!CL:0000576;9.48e-26;48!CL:0000766;8.97e-23;69!CL:0002087;3.49e-11;104!CL:0000094;3.68e-10;8!CL:0000763;5.34e-10;100!CL:0000738;6.93e-09;136!CL:0002393;9.29e-09;6!CL:0002397;9.29e-09;6!CL:0000988;5.42e-08;177!CL:0000081;5.71e-07;11 | |ontology_enrichment_celltype_v019=CL:0000860;3.37e-34;33!CL:0002057;3.37e-34;33!CL:0000473;5.59e-26;39!CL:0000234;5.59e-26;39!CL:0000576;9.48e-26;48!CL:0000766;8.97e-23;69!CL:0002087;3.49e-11;104!CL:0000094;3.68e-10;8!CL:0000763;5.34e-10;100!CL:0000738;6.93e-09;136!CL:0002393;9.29e-09;6!CL:0002397;9.29e-09;6!CL:0000988;5.42e-08;177!CL:0000081;5.71e-07;11 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.61e-49,42;CL:0002057,2.61e-49,42;CL:0000473,3.24e-46,48;CL:0000234,3.24e-46,48;CL:0000766,2.25e-44,72;CL:0000738,7.27e-43,136;CL:0000557,6.29e-36,67;CL:0000037,3.74e-35,168;CL:0000839,1.39e-34,66;CL:0002087,1.90e-34,115;CL:0002194,4.20e-34,59;CL:0000576,4.20e-34,59;CL:0000040,4.20e-34,59;CL:0000559,4.20e-34,59;CL:0002031,6.08e-34,120;CL:0002009,1.50e-32,61;CL:0000988,3.59e-32,177;CL:0002032,8.41e-32,161;CL:0000837,8.41e-32,161;CL:0000763,6.67e-28,108;CL:0000049,6.67e-28,108;CL:0002393,1.01e-13,9;CL:0002397,1.01e-13,9;CL:0000094,7.55e-10,8;CL:0000134,3.91e-09,354;CL:0002320,1.45e-08,361;CL:0000219,5.09e-07,386;CL:0000236,5.53e-07,14;CL:0000081,9.31e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;9.14e-35;42!CL:0000049;2.46e-08;108 | |ontology_enrichment_development_v019=CL:0002057;9.14e-35;42!CL:0000049;2.46e-08;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.86e-26!102;UBERON:0003061!3.86e-26!102;UBERON:0002193!6.54e-26!112;UBERON:0002371!2.49e-19!80;UBERON:0001474!1.26e-17!86;UBERON:0004765!3.28e-14!101;UBERON:0001434!3.28e-14!101;UBERON:0002405!4.24e-14!115;UBERON:0002204!3.32e-07!167 | |ontology_enrichment_uberon=UBERON:0002390!3.86e-26!102;UBERON:0003061!3.86e-26!102;UBERON:0002193!6.54e-26!112;UBERON:0002371!2.49e-19!80;UBERON:0001474!1.26e-17!86;UBERON:0004765!3.28e-14!101;UBERON:0001434!3.28e-14!101;UBERON:0002405!4.24e-14!115;UBERON:0002204!3.32e-07!167 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.64e-12;15!UBERON:0000179;3.64e-12;15!UBERON:0000463;3.64e-12;15!UBERON:0002390;4.61e-09;32!UBERON:0002193;2.55e-07;42 | |ontology_enrichment_uberon_v019=UBERON:0000178;3.64e-12;15!UBERON:0000179;3.64e-12;15!UBERON:0000463;3.64e-12;15!UBERON:0002390;4.61e-09;32!UBERON:0002193;2.55e-07;42 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,7.19e-45,108;UBERON:0002390,7.32e-45,98;UBERON:0003061,7.32e-45,98;UBERON:0002405,7.11e-34,93;UBERON:0002371,2.26e-33,76;UBERON:0001474,1.69e-31,82;UBERON:0004765,2.49e-27,90;UBERON:0001434,1.90e-25,100;UBERON:0003081,1.07e-14,203;UBERON:0000178,4.09e-12,15;UBERON:0000179,4.09e-12,15;UBERON:0000463,4.09e-12,15;UBERON:0002204,1.23e-10,167;UBERON:0002384,3.60e-08,371 | |||
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| ||
|short_description=p4@VMP1 | |short_description=p4@VMP1 | ||
}} | }} |
Revision as of 20:09, 18 November 2012
Short description: | p4@VMP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_VMP1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 55bp_to_ENST00000262291, NM_030938, uc002ixu.3, uc010wog.1, uc010woh.1, uc010woi.1, uc010woj.1_5end |
EntrezGene: | VMP1 |
HGNC: | 29559 |
UniProt: | Q96GC9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.61e-49 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.61e-49 | 42 |
defensive cell | 3.24e-46 | 48 |
phagocyte | 3.24e-46 | 48 |
myeloid leukocyte | 2.25e-44 | 72 |
leukocyte | 7.27e-43 | 136 |
granulocyte monocyte progenitor cell | 6.29e-36 | 67 |
hematopoietic stem cell | 3.74e-35 | 168 |
myeloid lineage restricted progenitor cell | 1.39e-34 | 66 |
nongranular leukocyte | 1.90e-34 | 115 |
monopoietic cell | 4.20e-34 | 59 |
monocyte | 4.20e-34 | 59 |
monoblast | 4.20e-34 | 59 |
promonocyte | 4.20e-34 | 59 |
hematopoietic lineage restricted progenitor cell | 6.08e-34 | 120 |
macrophage dendritic cell progenitor | 1.50e-32 | 61 |
hematopoietic cell | 3.59e-32 | 177 |
hematopoietic oligopotent progenitor cell | 8.41e-32 | 161 |
hematopoietic multipotent progenitor cell | 8.41e-32 | 161 |
myeloid cell | 6.67e-28 | 108 |
common myeloid progenitor | 6.67e-28 | 108 |
intermediate monocyte | 1.01e-13 | 9 |
CD14-positive, CD16-positive monocyte | 1.01e-13 | 9 |
granulocyte | 7.55e-10 | 8 |
mesenchymal cell | 3.91e-09 | 354 |
connective tissue cell | 1.45e-08 | 361 |
motile cell | 5.09e-07 | 386 |
B cell | 5.53e-07 | 14 |
blood cell | 9.31e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 7.19e-45 | 108 |
hematopoietic system | 7.32e-45 | 98 |
blood island | 7.32e-45 | 98 |
immune system | 7.11e-34 | 93 |
bone marrow | 2.26e-33 | 76 |
bone element | 1.69e-31 | 82 |
skeletal element | 2.49e-27 | 90 |
skeletal system | 1.90e-25 | 100 |
lateral plate mesoderm | 1.07e-14 | 203 |
blood | 4.09e-12 | 15 |
haemolymphatic fluid | 4.09e-12 | 15 |
organism substance | 4.09e-12 | 15 |
musculoskeletal system | 1.23e-10 | 167 |
connective tissue | 3.60e-08 | 371 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.