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MCL coexpression mm9:2410: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000475!3.23e-12!150;UBERON:0001041!7.54e-12!80;UBERON:0000077!1.35e-10!35;UBERON:0004921!2.37e-10!114;UBERON:0004119!3.06e-10!118;UBERON:0000925!3.06e-10!118;UBERON:0006595!3.06e-10!118;UBERON:0001007!4.45e-10!116;UBERON:0001555!4.45e-10!116;UBERON:0007026!4.45e-10!116;UBERON:0001048!5.48e-10!134;UBERON:0004177!2.71e-09!29;UBERON:0005057!2.71e-09!29;UBERON:0002390!1.45e-08!45;UBERON:0003061!1.45e-08!45;UBERON:0002193!3.62e-08!48;UBERON:0002405!3.62e-08!48;UBERON:0005911!7.78e-08!69;UBERON:0005177!1.05e-07!79;UBERON:0003081!1.08e-07!87;UBERON:0002100!1.36e-07!90;UBERON:0007811!2.73e-07!36;UBERON:0002530!3.46e-07!65;UBERON:0003408!3.51e-07!24;UBERON:0001004!3.78e-07!42;UBERON:0006562!7.88e-07!24;UBERON:0001557!7.88e-07!24;UBERON:0001042!7.88e-07!24;UBERON:0008814!7.88e-07!24;UBERON:0009145!7.88e-07!24;UBERON:0000065!8.25e-07!41;UBERON:0002370!8.31e-07!23;UBERON:0000974!8.31e-07!23;UBERON:0004807!8.31e-07!23;UBERON:0005058!8.31e-07!23;UBERON:0003351!8.31e-07!23;UBERON:0009113!8.31e-07!23;UBERON:0003295!8.31e-07!23;UBERON:0009722!8.31e-07!23;UBERON:0005562!8.31e-07!23;UBERON:0007690!8.31e-07!23;UBERON:0000926!8.63e-07!120;UBERON:0004120!8.63e-07!120;UBERON:0006603!8.63e-07!120;UBERON:0000949!9.40e-07!72
|ontology_enrichment_uberon=UBERON:0000475!3.23e-12!150;UBERON:0001041!7.54e-12!80;UBERON:0000077!1.35e-10!35;UBERON:0004921!2.37e-10!114;UBERON:0004119!3.06e-10!118;UBERON:0000925!3.06e-10!118;UBERON:0006595!3.06e-10!118;UBERON:0001007!4.45e-10!116;UBERON:0001555!4.45e-10!116;UBERON:0007026!4.45e-10!116;UBERON:0001048!5.48e-10!134;UBERON:0004177!2.71e-09!29;UBERON:0005057!2.71e-09!29;UBERON:0002390!1.45e-08!45;UBERON:0003061!1.45e-08!45;UBERON:0002193!3.62e-08!48;UBERON:0002405!3.62e-08!48;UBERON:0005911!7.78e-08!69;UBERON:0005177!1.05e-07!79;UBERON:0003081!1.08e-07!87;UBERON:0002100!1.36e-07!90;UBERON:0007811!2.73e-07!36;UBERON:0002530!3.46e-07!65;UBERON:0003408!3.51e-07!24;UBERON:0001004!3.78e-07!42;UBERON:0006562!7.88e-07!24;UBERON:0001557!7.88e-07!24;UBERON:0001042!7.88e-07!24;UBERON:0008814!7.88e-07!24;UBERON:0009145!7.88e-07!24;UBERON:0000065!8.25e-07!41;UBERON:0002370!8.31e-07!23;UBERON:0000974!8.31e-07!23;UBERON:0004807!8.31e-07!23;UBERON:0005058!8.31e-07!23;UBERON:0003351!8.31e-07!23;UBERON:0009113!8.31e-07!23;UBERON:0003295!8.31e-07!23;UBERON:0009722!8.31e-07!23;UBERON:0005562!8.31e-07!23;UBERON:0007690!8.31e-07!23;UBERON:0000926!8.63e-07!120;UBERON:0004120!8.63e-07!120;UBERON:0006603!8.63e-07!120;UBERON:0000949!9.40e-07!72
|tfbs_overrepresentation_for_novel_motifs=0.641384,0.128156,0.612053,0.688265,0.483253,0.704257,0.803568,0.370124,0.993085,0.489964,0.755749,0.790506,0.37041,0.81685,1.2551,0,1.02248,0.473993,0.352304,0.683591,0.570433,0.197567,0.815872,0.481455,0.620553,0.846564,0.906602,0.727368,0.535752,0.290745,0.711848,1.12823,0.471365,0.318879,0.503207,0.623685,0.460474,0.786577,1.10929,0.40068,0.478558,0.717547,0.185353,0.504971,0.325217,0.675898,0.938241,0.744678,0.162985,0.539131,1.0041,0.875451,0.282443,1.2746,1.29252,0.82458,0.549352,0.776619,0.331485,0.822375,1.10737,0.885556,0.39557,0.992216,0.8366,1.03484,1.43193,1.78579,1.1025,1.63712,0.590754,0.377213,0.205546,1.32691,0.323563,0.310084,0.318792,0.926147,1.08947,0.575233,0.37865,1.04072,0.884013,1.69489,1.20828,0.11855,0.129654,0.791209,0.943446,1.94914,1.50286,1.21342,1.14153,0.490141,0.430015,0.409166,0.367176,1.14445,0.938512,0.731844,0.460566,1.12793,1.25667,1.00472,1.00361,0.717061,1.06633,0.740267,0.580757,0.57247,0.633483,1.25851,0.576517,0.7614,1.51002,0.476467,0.143825,0.692434,1.02384,1.15537,1.33244,0.970073,0.848526,0.925183,1.56496,1.09333,0.812403,1.13449,1.43038,0.493609,1.23918,0.680176,1.40022,0.839311,1.53196,0.195549,0.650785,0.719099,1.482,2.31884,1.91709,1.43673,0.861473,1.1391,0.996781,0.718046,0.941555,2.27909,0.653418,0.485304,0.293812,0.184289,1.27621,0.416214,0.838313,1.35996,0.87653,0.516549,0.63863,0.650472,1.49167,1.20739,1.09379,0.630949,0.993294,0.830321,1.16191,0.788782,0.0824127
}}
}}

Revision as of 21:22, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr5:104183813..104183817,+p@chr5:104183813..104183817
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Mm9::chr5:104211087..104211090,+p@chr5:104211087..104211090
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Mm9::chr5:104253470..104253475,+p@chr5:104253470..104253475
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Mm9::chr5:104275611..104275615,+p@chr5:104275611..104275615
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
organism subdivision3.23e-12150
foregut7.54e-1280
mixed endoderm/mesoderm-derived structure1.35e-1035
subdivision of digestive tract2.37e-10114
endoderm-derived structure3.06e-10118
endoderm3.06e-10118
presumptive endoderm3.06e-10118
digestive system4.45e-10116
digestive tract4.45e-10116
primitive gut4.45e-10116
primordium5.48e-10134
hemopoietic organ2.71e-0929
immune organ2.71e-0929
hematopoietic system1.45e-0845
blood island1.45e-0845
hemolymphoid system3.62e-0848
immune system3.62e-0848
endo-epithelium7.78e-0869
trunk region element1.05e-0779
lateral plate mesoderm1.08e-0787
trunk1.36e-0790
craniocervical region2.73e-0736
gland3.46e-0765
gland of gut3.51e-0724
respiratory system3.78e-0742
pharynx7.88e-0724
upper respiratory tract7.88e-0724
chordate pharynx7.88e-0724
pharyngeal arch system7.88e-0724
pharyngeal region of foregut7.88e-0724
respiratory tract8.25e-0741
thymus8.31e-0723
neck8.31e-0723
respiratory system epithelium8.31e-0723
hemolymphoid system gland8.31e-0723
pharyngeal epithelium8.31e-0723
thymic region8.31e-0723
pharyngeal gland8.31e-0723
entire pharyngeal arch endoderm8.31e-0723
thymus primordium8.31e-0723
early pharyngeal endoderm8.31e-0723
mesoderm8.63e-07120
mesoderm-derived structure8.63e-07120
presumptive mesoderm8.63e-07120
endocrine system9.40e-0772


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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