FFCP PHASE1:Hg19::chr12:51442103..51442127,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=25875|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24241|TSSclassifier=S|UniProt=F8W6J0,B3KXK7,B7Z7E4,F8W1Z2,F8VR35,F8VR33,F8VPY5,F8W0R0,F8VQE7,F8VVQ3,F8W1U1,F8VTR1,F8VS60,F8VXQ4|association_with_transcript=0bp_to_ENST00000380123,ENST00000380135,ENST00000418425,ENST00000448283,ENST00000546992,ENST00000547008,ENST00000547555,ENST00000547660,ENST00000547877,ENST00000548209,ENST00000548251,ENST00000548390,ENST00000548401,ENST00000549340,ENST00000549686,ENST00000550100,ENST00000550442,ENST00000550715,ENST00000550814,ENST00000551261_5end|description=CAGE_peak_1_at_LETMD1_5end|id=chr12:51442103..51442127,+|ontology_enrichment_celltype=CL:0000838!2.05e-07!52;CL:0000542!4.86e-07!53;CL:0000051!4.86e-07!53;CL:0000791!7.63e-07!18;CL:0000789!7.63e-07!18;CL:0002420!7.63e-07!18;CL:0002419!7.63e-07!18;CL:0000790!7.63e-07!18|ontology_enrichment_celltype_v019=CL:0000791;7.71e-07;18!CL:0000789;7.71e-07;18!CL:0002419;7.71e-07;18|ontology_enrichment_celltype_v019_2=CL:0000838,2.05e-07,52;CL:0000542,4.86e-07,53;CL:0000051,4.86e-07,53;CL:0000791,7.63e-07,18;CL:0000789,7.63e-07,18;CL:0002420,7.63e-07,18;CL:0002419,7.63e-07,18;CL:0000790,7.63e-07,18|ontology_enrichment_development_v019=CL:0000790;7.71e-07;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.42e-08!115;UBERON:0001950!4.89e-07!20;UBERON:0002619!6.34e-07!22;UBERON:0001049!8.03e-07!57;UBERON:0005068!8.03e-07!57;UBERON:0006241!8.03e-07!57;UBERON:0007135!8.03e-07!57|ontology_enrichment_uberon_v019=UBERON:0001950;4.81e-07;20!UBERON:0002619;6.12e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.27e-08,114;UBERON:0001950,4.89e-07,20;UBERON:0002619,6.34e-07,22;UBERON:0000073,6.81e-07,53;UBERON:0002616,6.81e-07,53;UBERON:0001049,7.32e-07,56;UBERON:0005068,7.32e-07,56;UBERON:0006241,7.32e-07,56;UBERON:0007135,7.32e-07,56|phase1_expression=43.9661677834747,68.5121676451146,54.1264911728529,49.0359161930339,67.4911252585205,47.1062803014199,111.451946394057,55.5913488615611,200.329376829276,24.8191275866524,24.423040879035,64.0033220341405,52.4896286674623,62.6257745977836,49.0468116077315,31.5992818832334,37.3670607374866,40.8973650616929,42.9380862935646,55.7738393087849,44.2681500000029,49.839300715016,33.7758464814647,32.3023643172007,21.7188766499009,48.675339461445,44.4985194818706,43.9993267543467,56.6444558662422,64.8671682784289,51.8634013108855,22.0661093874943,25.301297177373,60.2699036571864,80.9532246064152,97.9546011838334,72.5193085157073,41.5496556398908,42.1143339687298,39.0619567288533,53.7397138175818,61.2159028775871,57.1817760147894,35.1863737846547,48.7459967358564,39.7837860348019,41.1399395323062,46.8731392344881,27.2541606387691,28.4815468398929,36.3748203271323,41.1479080006138,52.401343471966,52.2842593702899,58.233389235567,35.5778021735523,37.115236407867,39.3266097778898,36.4239831921374,49.4230701697184,33.2455305415501,31.9955761181115,36.302385687137,34.9504295436809,30.1817608173727,44.2560475259089,38.6149794377257,32.4110778181199,30.7674921867919,41.4830693386773,42.3779651843358,39.0374294146819,43.3553470794012,55.3488850137287,56.9779523906317,53.8822718956526,50.8848699093623,56.3163348155649,54.8074250637043,48.7371791797535,61.0674199001207,51.3286272078621,51.0389108937836,51.3370294586404,49.8125182163591,55.0481987110794,60.8601900294739,62.0732635150842,56.1888141867133,57.2432252721218,73.4284730151188,62.8343792626905,56.9587109906591,89.8765034337376,83.5157758842489,65.3192530242191,83.7983620684929,70.7419372948496,71.9605246498282,60.6886978268162,72.6806654592907,90.428530895334,95.4650969198765,80.215528957325,75.7137182210332,83.7398121526088,66.3469466224288,71.3468650872011,72.7031752859719,67.4195408875072,66.6003542863895,64.6260881189167,93.8653944815842,116.647801047115,88.8551952342303,68.3255336466324,63.231381444317,80.4088222429354,62.7488836208367,79.9599189953483,82.0365151859087,88.3920401336988,69.565705013931,74.1042478584082,111.188346631588,72.4538391254692,76.3649037136573,57.6595285622735,52.1508381777839,59.088356784182,39.0090986102339,48.9611627583654,30.3034271569167,51.685798790993,57.6538597231273,66.1948591650964,38.9690114055039,39.4174244945135,38.0029964999553,33.037680221922,32.059696777991,57.4998141434958,71.0375812170457,52.651390875389,24.9901493114106,28.5572769170798,25.7938443406598,47.4596342367631,41.1836335761692,46.0607301648661,17.6898542556368,18.0649264972286,23.6055541093164,22.0470097350364,19.7164735018656,18.9831448938647,15.465627523724,41.3466814670926,38.4227563701647,36.1498261785844,31.8235160516226,44.0957821316737,46.127728876604,25.0010894635191,24.3042584364528,35.5412918570637,24.4737016162525,20.1574550065147,21.4643292452237,24.6809071487714,17.2209639294583,13.1780417436063,11.6334079244498,76.3164591249435,25.3455695364612,19.1212072613515,52.5664447828479,68.2671157382177,19.861429403108,31.95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881011,89.8741112918056,53.4289656742102,33.0819273370395,47.4618036756715,77.6006847265354,71.0781069738601,56.6321822413244,80.6014947564556,105.019163331498,35.0884970788597,42.6741613414793,24.094360477268,40.5006895617517,58.9272019466115,50.1062746106048,72.2289069041592,57.5985344118783,32.0215556287126,61.9958853050092,47.5021786141649,64.231397663106,90.7664275167317,55.5511052154651,48.9418168325104,58.634340359334,63.0033515563168,68.3864078485645,114.144840063687,50.0952011627202,74.0515116224928,70.9762083674198,97.0203576038941,43.590534513047,88.8415771466181,49.7061046132757,98.8421103057686,85.359238546975,49.7706956506146,87.7663811993366,46.8594722893039,57.1781945933948,69.0120891811214,44.2176256290017,26.3675427814672,27.7106292303456,51.9009203541756,101.0947406237,82.0507635130673,72.5120297650442,54.8219388612359,83.5066390563503,53.4282092365053,60.1224421097611,59.0883802229264,50.1842783081339,90.1309734670901,111.919446046847,54.6485493711358,78.7948154282115,92.4506940931739,49.3833161179599,48.0490710637655,54.6769589275772,63.8002518123572,45.7451456503712,46.0694743065906,20.7311079919137,43.5145540246722,45.6361846852926,45.4732259458427,87.3128759781666,144.334002531718,39.1577869443141,85.4493574248425,62.3871825430175,38.128329118286,45.9115245982167,87.0291074443708,73.7432666675238,96.8119118143183,26.7836413080061,66.0911148942928,34.6101249699031,33.9387682806362,26.7700651311054,31.9280222548821,47.2208281705375,38.7465237635063,121.485057185065,62.6768848230938,52.2873017705852,50.1092923392054,62.1877079594084,44.2693222288912,40.9409245249883,63.0870743378912,47.9895600081525,58.2260820095147,56.9629861909516,72.0485831708827,64.475383277672,31.7866451929564,34.5655634096134,56.5757245322535,43.3202120571765,53.8909777604542,22.0602857935741,108.968620141147,25.0993966973022,95.9333158498348,37.5425507845527,71.1445205144283,50.0482299328358,46.6029741929859,79.1006008812733,62.5108559991304|short_description=p1@LETMD1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=25875 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24241 | |||
|TSSclassifier=S | |||
|UniProt=F8W6J0,B3KXK7,B7Z7E4,F8W1Z2,F8VR35,F8VR33,F8VPY5,F8W0R0,F8VQE7,F8VVQ3,F8W1U1,F8VTR1,F8VS60,F8VXQ4 | |||
|association_with_transcript=0bp_to_ENST00000380123,ENST00000380135,ENST00000418425,ENST00000448283,ENST00000546992,ENST00000547008,ENST00000547555,ENST00000547660,ENST00000547877,ENST00000548209,ENST00000548251,ENST00000548390,ENST00000548401,ENST00000549340,ENST00000549686,ENST00000550100,ENST00000550442,ENST00000550715,ENST00000550814,ENST00000551261_5end | |||
|description=CAGE_peak_1_at_LETMD1_5end | |||
|id=chr12:51442103..51442127,+ | |||
|ontology_enrichment_celltype=CL:0000838!2.05e-07!52;CL:0000542!4.86e-07!53;CL:0000051!4.86e-07!53;CL:0000791!7.63e-07!18;CL:0000789!7.63e-07!18;CL:0002420!7.63e-07!18;CL:0002419!7.63e-07!18;CL:0000790!7.63e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000791;7.71e-07;18!CL:0000789;7.71e-07;18!CL:0002419;7.71e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.05e-07,52;CL:0000542,4.86e-07,53;CL:0000051,4.86e-07,53;CL:0000791,7.63e-07,18;CL:0000789,7.63e-07,18;CL:0002420,7.63e-07,18;CL:0002419,7.63e-07,18;CL:0000790,7.63e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;7.71e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.42e-08!115;UBERON:0001950!4.89e-07!20;UBERON:0002619!6.34e-07!22;UBERON:0001049!8.03e-07!57;UBERON:0005068!8.03e-07!57;UBERON:0006241!8.03e-07!57;UBERON:0007135!8.03e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;4.81e-07;20!UBERON:0002619;6.12e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.27e-08,114;UBERON:0001950,4.89e-07,20;UBERON:0002619,6.34e-07,22;UBERON:0000073,6.81e-07,53;UBERON:0002616,6.81e-07,53;UBERON:0001049,7.32e-07,56;UBERON:0005068,7.32e-07,56;UBERON:0006241,7.32e-07,56;UBERON:0007135,7.32e-07,56 | |||
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| |||
|short_description=p1@LETMD1 | |||
}} |
Revision as of 23:01, 10 September 2013
Short description: | p1@LETMD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LETMD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000380123, ENST00000380135, ENST00000418425, ENST00000448283, ENST00000546992, ENST00000547008, ENST00000547555, ENST00000547660, ENST00000547877, ENST00000548209, ENST00000548251, ENST00000548390, ENST00000548401, ENST00000549340, ENST00000549686, ENST00000550100, ENST00000550442, ENST00000550715, ENST00000550814, ENST00000551261_5end |
EntrezGene: | LETMD1 |
HGNC: | 24241 |
UniProt: | F8W6J0B3KXK7B7Z7E4F8W1Z2F8VR35F8VR33F8VPY5F8W0R0F8VQE7F8VVQ3F8W1U1F8VTR1F8VS60F8VXQ4 |
Genome view: | ZENBU |
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CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.05e-07 | 52 |
lymphocyte | 4.86e-07 | 53 |
common lymphoid progenitor | 4.86e-07 | 53 |
mature alpha-beta T cell | 7.63e-07 | 18 |
alpha-beta T cell | 7.63e-07 | 18 |
immature T cell | 7.63e-07 | 18 |
mature T cell | 7.63e-07 | 18 |
immature alpha-beta T cell | 7.63e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.27e-08 | 114 |
neocortex | 4.89e-07 | 20 |
regional part of cerebral cortex | 6.34e-07 | 22 |
regional part of nervous system | 6.81e-07 | 53 |
regional part of brain | 6.81e-07 | 53 |
neural tube | 7.32e-07 | 56 |
neural rod | 7.32e-07 | 56 |
future spinal cord | 7.32e-07 | 56 |
neural keel | 7.32e-07 | 56 |
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