FFCP PHASE1:Hg19::chr12:56510368..56510379,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6171|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10354|TSSclassifier=S|UniProt=P62945|association_with_transcript=0bp_to_ENST00000501597,ENST00000546591,NM_001035267,NM_021104,uc001sjn.2,uc001sjo.2_5end|description=CAGE_peak_5_at_RPL41_5end|id=chr12:56510368..56510379,+|ontology_enrichment_celltype=CL:0000393!1.11e-13!60;CL:0000211!1.11e-13!60;CL:0000680!1.68e-12!57;CL:0000056!1.68e-12!57;CL:0000355!1.68e-12!57;CL:0000187!4.53e-12!54;CL:0000183!5.69e-12!59;CL:0000192!1.12e-10!42;CL:0000514!1.12e-10!42;CL:0000055!3.67e-09!180;CL:0000359!1.04e-07!32|ontology_enrichment_celltype_v019=CL:0000192;1.24e-07;43!CL:0000187;1.61e-07;55!CL:0000359;2.18e-07;32!CL:0000393;8.82e-07;61!CL:0000211;8.82e-07;61|ontology_enrichment_celltype_v019_2=CL:0000393,7.52e-14,61;CL:0000211,7.52e-14,61;CL:0000680,1.14e-12,58;CL:0000056,1.14e-12,58;CL:0000355,1.14e-12,58;CL:0000187,3.09e-12,55;CL:0000192,8.95e-11,43;CL:0000514,8.95e-11,43;CL:0000359,1.16e-07,32|ontology_enrichment_development_v019=CL:0000514;1.24e-07;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004290!2.91e-15!70;UBERON:0000914!1.04e-14!83;UBERON:0002329!1.04e-14!83;UBERON:0003077!1.04e-14!83;UBERON:0003059!1.04e-14!83;UBERON:0007282!1.04e-14!83;UBERON:0009618!1.04e-14!83;UBERON:0007285!1.04e-14!83;UBERON:0001134!9.81e-13!61;UBERON:0002036!9.81e-13!61;UBERON:0003082!9.81e-13!61;UBERON:0002385!5.84e-12!63;UBERON:0001015!5.84e-12!63;UBERON:0000383!5.84e-12!63;UBERON:0000486!1.68e-11!82;UBERON:0000481!2.50e-10!347;UBERON:0005256!3.15e-10!143;UBERON:0000119!1.12e-08!312;UBERON:0000483!1.95e-08!309;UBERON:0000475!1.97e-08!365;UBERON:0003104!3.64e-08!238;UBERON:0009142!3.64e-08!238;UBERON:0002100!1.01e-07!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.42e-16,78;UBERON:0003077,7.39e-16,72;UBERON:0007285,7.39e-16,72;UBERON:0002329,1.95e-15,71;UBERON:0003059,1.95e-15,71;UBERON:0007282,1.95e-15,71;UBERON:0004290,1.95e-15,71;UBERON:0009618,1.95e-15,71;UBERON:0007524,2.21e-15,73;UBERON:0001134,6.64e-13,62;UBERON:0002036,6.64e-13,62;UBERON:0003082,6.64e-13,62;UBERON:0002385,4.17e-12,64;UBERON:0001015,4.17e-12,64;UBERON:0000383,4.17e-12,64;UBERON:0000486,1.17e-11,83;UBERON:0005256,3.36e-09,122;UBERON:0003104,3.42e-09,160;UBERON:0009142,3.42e-09,160;UBERON:0000119,4.79e-09,309;UBERON:0000483,8.44e-09,306;UBERON:0010314,1.20e-07,132;UBERON:0002100,7.94e-07,199|phase1_expression=3.81524596468169,4.06790995392868,2.11431606143957,3.00219895059391,0.893922188854576,5.23403114460221,17.7309914717817,2.52687949370732,3.3954131665979,5.89761447603621,7.6758128476967,1.96597234917155,3.16520373874144,5.19818682432196,5.96515276310248,11.4295274896802,8.43772339233568,8.03341099426111,2.43966399395253,4.30923703268758,7.34402488479311,4.38836610069323,4.00730381983479,6.56997240349844,4.6450776650077,7.18286014030742,6.23964479819588,6.76912719297642,3.93364276848904,4.60595277716655,2.01260960310899,12.871897142705,6.024118375565,2.9580320813343,5.26776963946051,2.55904618477359,0.880801318004542,1.10799081706375,1.60435557976113,0.868043482863407,1.34349284543955,1.94336199611388,1.28787783817093,0.872389432677388,0.755751887377619,1.94067248950253,2.32429036905685,2.87817521615278,0.619412741790207,2.3015391385772,1.7931249457037,1.41889337933151,1.37898272294647,3.22742341791913,2.70852973188684,1.12945403725563,1.09162460023138,2.02251136000576,1.22433556948361,0.962787081228281,1.27867425159808,1.31940520074686,0.598390972864896,0.852449501065388,0.580418477257168,1.13477044938228,0.622822248995575,1.7587406567972,2.08593167368081,2.6062661364614,2.42159801053347,1.84138817993782,0.949387162322653,2.11255286311942,2.12604299965044,1.46761051855863,1.46027220490444,1.80212271409808,1.28580469357664,3.13514018115373,1.19350006319454,3.28795476776341,1.75996244461323,1.63841583378639,2.66852776159066,3.84057200309856,3.60356388332411,2.87376219977242,4.62731410949403,1.90810750907073,2.27685187643779,0.587237189370939,1.52909291250092,0,1.68152568894461,1.58030450865046,1.57367816091066,2.75107533924415,2.2616164889946,1.33749196312542,2.60737813306872,5.20792586308207,9.74133642039557,2.33961959458865,4.41908861212256,5.53834736459053,1.35401931882508,1.66518715643378,4.03183977435623,1.80881695064044,4.42160028457357,2.02862160014537,1.33457906845854,2.1403266247177,1.04535523804977,1.35971211237079,5.3650869104269,1.71813722741315,2.02415753615602,3.82278497188916,1.95325036156926,3.8018081777935,1.20460095262218,2.17577238962511,6.24653632761729,4.02521328474829,6.56902397536837,3.02410114837099,2.40696176205157,2.46201486600758,0,7.37770945674,4.85877735005415,2.1686349143074,4.51204119572301,3.33146993609895,0.795285947051099,6.8128881842369,5.2939497611878,7.53879951372717,3.77689578480442,5.37014209540622,2.18577172975525,5.93255108455087,0,0.696518949197069,0.797747763113191,2.6233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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6171 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10354 | |||
|TSSclassifier=S | |||
|UniProt=P62945 | |||
|association_with_transcript=0bp_to_ENST00000501597,ENST00000546591,NM_001035267,NM_021104,uc001sjn.2,uc001sjo.2_5end | |||
|description=CAGE_peak_5_at_RPL41_5end | |||
|id=chr12:56510368..56510379,+ | |||
|ontology_enrichment_celltype=CL:0000393!1.11e-13!60;CL:0000211!1.11e-13!60;CL:0000680!1.68e-12!57;CL:0000056!1.68e-12!57;CL:0000355!1.68e-12!57;CL:0000187!4.53e-12!54;CL:0000183!5.69e-12!59;CL:0000192!1.12e-10!42;CL:0000514!1.12e-10!42;CL:0000055!3.67e-09!180;CL:0000359!1.04e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000192;1.24e-07;43!CL:0000187;1.61e-07;55!CL:0000359;2.18e-07;32!CL:0000393;8.82e-07;61!CL:0000211;8.82e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,7.52e-14,61;CL:0000211,7.52e-14,61;CL:0000680,1.14e-12,58;CL:0000056,1.14e-12,58;CL:0000355,1.14e-12,58;CL:0000187,3.09e-12,55;CL:0000192,8.95e-11,43;CL:0000514,8.95e-11,43;CL:0000359,1.16e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;1.24e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!2.91e-15!70;UBERON:0000914!1.04e-14!83;UBERON:0002329!1.04e-14!83;UBERON:0003077!1.04e-14!83;UBERON:0003059!1.04e-14!83;UBERON:0007282!1.04e-14!83;UBERON:0009618!1.04e-14!83;UBERON:0007285!1.04e-14!83;UBERON:0001134!9.81e-13!61;UBERON:0002036!9.81e-13!61;UBERON:0003082!9.81e-13!61;UBERON:0002385!5.84e-12!63;UBERON:0001015!5.84e-12!63;UBERON:0000383!5.84e-12!63;UBERON:0000486!1.68e-11!82;UBERON:0000481!2.50e-10!347;UBERON:0005256!3.15e-10!143;UBERON:0000119!1.12e-08!312;UBERON:0000483!1.95e-08!309;UBERON:0000475!1.97e-08!365;UBERON:0003104!3.64e-08!238;UBERON:0009142!3.64e-08!238;UBERON:0002100!1.01e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.42e-16,78;UBERON:0003077,7.39e-16,72;UBERON:0007285,7.39e-16,72;UBERON:0002329,1.95e-15,71;UBERON:0003059,1.95e-15,71;UBERON:0007282,1.95e-15,71;UBERON:0004290,1.95e-15,71;UBERON:0009618,1.95e-15,71;UBERON:0007524,2.21e-15,73;UBERON:0001134,6.64e-13,62;UBERON:0002036,6.64e-13,62;UBERON:0003082,6.64e-13,62;UBERON:0002385,4.17e-12,64;UBERON:0001015,4.17e-12,64;UBERON:0000383,4.17e-12,64;UBERON:0000486,1.17e-11,83;UBERON:0005256,3.36e-09,122;UBERON:0003104,3.42e-09,160;UBERON:0009142,3.42e-09,160;UBERON:0000119,4.79e-09,309;UBERON:0000483,8.44e-09,306;UBERON:0010314,1.20e-07,132;UBERON:0002100,7.94e-07,199 | |||
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| |||
|short_description=p5@RPL41 | |||
}} |
Revision as of 23:31, 10 September 2013
Short description: | p5@RPL41 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_RPL41_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000501597, ENST00000546591, NM_001035267, NM_021104, uc001sjn.2, uc001sjo.2_5end |
EntrezGene: | RPL41 |
HGNC: | 10354 |
UniProt: | P62945 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 7.52e-14 | 61 |
electrically active cell | 7.52e-14 | 61 |
muscle precursor cell | 1.14e-12 | 58 |
myoblast | 1.14e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.14e-12 | 58 |
muscle cell | 3.09e-12 | 55 |
smooth muscle cell | 8.95e-11 | 43 |
smooth muscle myoblast | 8.95e-11 | 43 |
vascular associated smooth muscle cell | 1.16e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 2.42e-16 | 78 |
paraxial mesoderm | 7.39e-16 | 72 |
presumptive paraxial mesoderm | 7.39e-16 | 72 |
somite | 1.95e-15 | 71 |
presomitic mesoderm | 1.95e-15 | 71 |
presumptive segmental plate | 1.95e-15 | 71 |
dermomyotome | 1.95e-15 | 71 |
trunk paraxial mesoderm | 1.95e-15 | 71 |
dense mesenchyme tissue | 2.21e-15 | 73 |
skeletal muscle tissue | 6.64e-13 | 62 |
striated muscle tissue | 6.64e-13 | 62 |
myotome | 6.64e-13 | 62 |
muscle tissue | 4.17e-12 | 64 |
musculature | 4.17e-12 | 64 |
musculature of body | 4.17e-12 | 64 |
multilaminar epithelium | 1.17e-11 | 83 |
trunk mesenchyme | 3.36e-09 | 122 |
mesenchyme | 3.42e-09 | 160 |
entire embryonic mesenchyme | 3.42e-09 | 160 |
cell layer | 4.79e-09 | 309 |
epithelium | 8.44e-09 | 306 |
structure with developmental contribution from neural crest | 1.20e-07 | 132 |
trunk | 7.94e-07 | 199 |
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