FFCP PHASE1:Hg19::chr14:73583951..73583955,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr14:73583951..73583955,+|id=chr14:73583951..73583955,+|ontology_enrichment_celltype=CL:0000037!2.75e-08!172;CL:0000566!2.75e-08!172;CL:0000738!7.49e-07!140;CL:0000542!8.43e-07!53;CL:0000051!8.43e-07!53;CL:0000988!8.52e-07!182;CL:0002032!8.56e-07!165;CL:0000837!8.56e-07!165|ontology_enrichment_celltype_v019=CL:0000624;2.94e-11;6!CL:0002393;2.94e-11;6!CL:0002397;2.94e-11;6!CL:0000623;5.30e-11;3!CL:0000784;1.87e-10;3!CL:0000791;9.84e-10;18!CL:0000789;9.84e-10;18!CL:0002419;9.84e-10;18!CL:0000511;1.83e-08;1!CL:0002625;1.83e-08;1!CL:0000216;1.83e-08;1!CL:0002591;1.83e-08;1!CL:0000084;5.98e-07;25|ontology_enrichment_celltype_v019_2=CL:0000624,2.15e-11,6;CL:0000623,5.06e-11,3;CL:0000825,5.06e-11,3;CL:0000784,2.27e-10,3;CL:0000791,1.09e-09,18;CL:0000789,1.09e-09,18;CL:0002420,1.09e-09,18;CL:0002419,1.09e-09,18;CL:0000790,1.09e-09,18;CL:0000511,9.46e-09,1;CL:0002625,9.46e-09,1;CL:0000216,9.46e-09,1;CL:0002591,3.53e-08,1;CL:0002087,4.18e-08,115;CL:0000037,7.58e-08,168;CL:0000838,8.69e-08,52;CL:0002393,9.81e-08,9;CL:0002397,9.81e-08,9;CL:0000738,1.19e-07,136;CL:0000542,1.28e-07,53;CL:0000051,1.28e-07,53;CL:0000988,2.68e-07,177;CL:0000084,6.41e-07,25;CL:0000827,6.41e-07,25|ontology_enrichment_development_v019=CL:0000790;9.84e-10;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0002134;1.83e-08;1!UBERON:0001136;1.83e-08;1!UBERON:0001343;1.83e-08;1!UBERON:0005208;1.83e-08;1!UBERON:0004910;1.83e-08;1!UBERON:0004145;1.83e-08;1!UBERON:0005946;1.83e-08;1!UBERON:0004813;1.83e-08;1!UBERON:0005965;1.83e-08;1!UBERON:0002078;1.83e-08;1|ontology_enrichment_uberon_v019_2=UBERON:0004145,2.27e-10,3;UBERON:0001136,9.46e-09,1;UBERON:0001343,9.46e-09,1;UBERON:0004910,9.46e-09,1;UBERON:0005154,9.46e-09,1;UBERON:0005295,9.46e-09,1;UBERON:0004813,9.46e-09,1;UBERON:0005297,9.46e-09,1;UBERON:0005294,9.46e-09,1;UBERON:0010141,9.46e-09,1;UBERON:0005891,9.46e-09,1;UBERON:0002134,1.27e-08,1;UBERON:0005208,1.27e-08,1;UBERON:0005946,1.27e-08,1;UBERON:0005965,1.27e-08,1;UBERON:0002078,1.27e-08,1|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0.436882744260345,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0.125542639594803,0.382067028739756,0.410502947249729,0.629686250509434,0,0.767658796194425,0.619264493264304,0,0,0,0.232401601740905,0.426507697462265,0.293600439334847,1.66198622559563,0.200544447470142,1.51907609501096,0,0,0,0.290796477559129,0,0.242584061187816,0.232429036905685,0,0,0.575384784644301,0,0,0.344745680736619,0,0,0.188242339542605,0,0,0,0,0,0,0.199463657621632,0,0.290209238628584,0,0,0.502497330513487,0,0,0,0,0,0.633765858935825,1.06302149982522,0.419317291016752,0.561643155732475,0.450530678524519,0.16072558669708,0.855038231223746,0.79566670879636,0,0,0,0,0.853460445133014,0,0,0,0,1.70763890732835,0,0,0,0,0.263384084775077,1.180258620683,1.57204305099666,1.43921049299656,0.334372990781356,0,3.31413464014313,0,0,0.589211814949674,0,0.541607727530031,0.640456598628376,0,1.31550323682941,0,0.579606171470105,0.296573126324121,0.802622484269139,0,0.453237370790265,0,0.68725489096526,0.253019692019503,0,0,0,0.301150238155546,0.127986611154418,0,0.473554504088034,0,1.20964045934839,0.802320587350522,1.01377082717959,0,0,0,0,0,0.144846518960824,0,0,0.283604451492204,0.221729397462564,0.087834785693126,0.130979075497713,0,0,0,0,0,1.43094374583205,1.14398982156026,0,0,0,0,0,0,0,0,0.516833518338658,0,0,0,0,0.24406205754817,0.367663080345869,0,0.267899184852239,0,0.112611480483322,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0.161872944368132,0.561803226808994,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0.113432183160021,0,0,0,0.300091096084402,0.206105058476878,0.257640540045629,0,0,0,0,0.0920498986422993,0,0,0,0.169560592310488,0,0,0,0,0,0.232387885739037,0.310983165046111,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0.122988438543114,0.171567810298526,0,0,0,0,0,0,0,0,0,0.577465791044295,0.462985512576611,0,0,0,0.246217006087397,0,0.594524649154913,0,0,0.141775097242386,0,0.290633938513962,0,0,0,0,0.144119953416961,0.37872730027914,0,0,0,0,0,0,0.285826432630578,0.112131084345361,0.43596006883328,0.07333828582095,0.129271715757778,0,0,0,0,0.257207374262142,0,0,0.285955987316295,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0.112085143993527,2.56139988262505,0.215627574859517,2.56686072559497,0,0,0,0.167516265334349,0,0.749007023947182,0,0,0.12269149171914,0,0,0,0.356857977594324,0.157702415033935,0,0,0,0,0,0,0,0,0,0.206768026122887,3.66714141391649,0.853820462427555,0,0,0,0,0.460385919864187,0.280660094433074,0,0,0.160853921143607,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21925987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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr14:73583951..73583955,+ | |||
|id=chr14:73583951..73583955,+ | |||
|ontology_enrichment_celltype=CL:0000037!2.75e-08!172;CL:0000566!2.75e-08!172;CL:0000738!7.49e-07!140;CL:0000542!8.43e-07!53;CL:0000051!8.43e-07!53;CL:0000988!8.52e-07!182;CL:0002032!8.56e-07!165;CL:0000837!8.56e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000624;2.94e-11;6!CL:0002393;2.94e-11;6!CL:0002397;2.94e-11;6!CL:0000623;5.30e-11;3!CL:0000784;1.87e-10;3!CL:0000791;9.84e-10;18!CL:0000789;9.84e-10;18!CL:0002419;9.84e-10;18!CL:0000511;1.83e-08;1!CL:0002625;1.83e-08;1!CL:0000216;1.83e-08;1!CL:0002591;1.83e-08;1!CL:0000084;5.98e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,2.15e-11,6;CL:0000623,5.06e-11,3;CL:0000825,5.06e-11,3;CL:0000784,2.27e-10,3;CL:0000791,1.09e-09,18;CL:0000789,1.09e-09,18;CL:0002420,1.09e-09,18;CL:0002419,1.09e-09,18;CL:0000790,1.09e-09,18;CL:0000511,9.46e-09,1;CL:0002625,9.46e-09,1;CL:0000216,9.46e-09,1;CL:0002591,3.53e-08,1;CL:0002087,4.18e-08,115;CL:0000037,7.58e-08,168;CL:0000838,8.69e-08,52;CL:0002393,9.81e-08,9;CL:0002397,9.81e-08,9;CL:0000738,1.19e-07,136;CL:0000542,1.28e-07,53;CL:0000051,1.28e-07,53;CL:0000988,2.68e-07,177;CL:0000084,6.41e-07,25;CL:0000827,6.41e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;9.84e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002134;1.83e-08;1!UBERON:0001136;1.83e-08;1!UBERON:0001343;1.83e-08;1!UBERON:0005208;1.83e-08;1!UBERON:0004910;1.83e-08;1!UBERON:0004145;1.83e-08;1!UBERON:0005946;1.83e-08;1!UBERON:0004813;1.83e-08;1!UBERON:0005965;1.83e-08;1!UBERON:0002078;1.83e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004145,2.27e-10,3;UBERON:0001136,9.46e-09,1;UBERON:0001343,9.46e-09,1;UBERON:0004910,9.46e-09,1;UBERON:0005154,9.46e-09,1;UBERON:0005295,9.46e-09,1;UBERON:0004813,9.46e-09,1;UBERON:0005297,9.46e-09,1;UBERON:0005294,9.46e-09,1;UBERON:0010141,9.46e-09,1;UBERON:0005891,9.46e-09,1;UBERON:0002134,1.27e-08,1;UBERON:0005208,1.27e-08,1;UBERON:0005946,1.27e-08,1;UBERON:0005965,1.27e-08,1;UBERON:0002078,1.27e-08,1 | |||
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| |||
|short_description=p@chr14:73583951..73583955,+ | |||
}} |
Revision as of 05:26, 11 September 2013
Short description: | p@chr14:73583951..73583955, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr14:73583951..73583955, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 2.15e-11 | 6 |
natural killer cell | 5.06e-11 | 3 |
pro-NK cell | 5.06e-11 | 3 |
plasmacytoid dendritic cell | 2.27e-10 | 3 |
mature alpha-beta T cell | 1.09e-09 | 18 |
alpha-beta T cell | 1.09e-09 | 18 |
immature T cell | 1.09e-09 | 18 |
mature T cell | 1.09e-09 | 18 |
immature alpha-beta T cell | 1.09e-09 | 18 |
androgen binding protein secreting cell | 9.46e-09 | 1 |
seminiferous tubule epithelial cell | 9.46e-09 | 1 |
Sertoli cell | 9.46e-09 | 1 |
smooth muscle cell of the pulmonary artery | 3.53e-08 | 1 |
nongranular leukocyte | 4.18e-08 | 115 |
hematopoietic stem cell | 7.58e-08 | 168 |
lymphoid lineage restricted progenitor cell | 8.69e-08 | 52 |
intermediate monocyte | 9.81e-08 | 9 |
CD14-positive, CD16-positive monocyte | 9.81e-08 | 9 |
leukocyte | 1.19e-07 | 136 |
lymphocyte | 1.28e-07 | 53 |
common lymphoid progenitor | 1.28e-07 | 53 |
hematopoietic cell | 2.68e-07 | 177 |
T cell | 6.41e-07 | 25 |
pro-T cell | 6.41e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
outflow tract | 2.27e-10 | 3 |
mesothelium | 9.46e-09 | 1 |
seminiferous tubule of testis | 9.46e-09 | 1 |
epithelium of male gonad | 9.46e-09 | 1 |
epithelial cord | 9.46e-09 | 1 |
sex cord | 9.46e-09 | 1 |
seminiferous tubule epithelium | 9.46e-09 | 1 |
testis sex cord | 9.46e-09 | 1 |
genital ridge | 9.46e-09 | 1 |
primitive sex cord of indifferent gonad | 9.46e-09 | 1 |
coelomic epithelium | 9.46e-09 | 1 |
tricuspid valve | 1.27e-08 | 1 |
right atrium valve | 1.27e-08 | 1 |
outflow tract of atrium | 1.27e-08 | 1 |
outflow part of right atrium | 1.27e-08 | 1 |
right cardiac atrium | 1.27e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.