FFCP PHASE1:Hg19::chr19:42259430..42259452,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4680|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1818|TSSclassifier=S|UniProt=P40199|association_with_transcript=32bp_to_NM_002483,uc002orm.2_5end|coexpression_cluster_id=C742|description=CAGE_peak_1_at_CEACAM6_5end|id=chr19:42259430..42259452,+|ontology_enrichment_celltype=CL:0002076!1.34e-16!43;CL:0000223!2.14e-11!59;CL:0002368!3.49e-09!13;CL:0002251!4.54e-08!21;CL:0000066!2.45e-07!254|ontology_enrichment_celltype_v019=CL:0002076;2.06e-14;42!CL:0002368;4.80e-12;13!CL:0002251;1.12e-08;20!CL:0002202;2.35e-07;9!CL:0002632;2.35e-07;9!CL:0000197;2.79e-07;6!CL:0000098;2.79e-07;6!CL:0002167;2.79e-07;6|ontology_enrichment_celltype_v019_2=CL:0002076,1.87e-18,42;CL:0000223,8.82e-14,58;CL:0002368,4.61e-12,13;CL:0002251,1.11e-08,20;CL:0002202,2.27e-07,9;CL:0002632,2.27e-07,9;CL:0000197,2.55e-07,6;CL:0000098,2.55e-07,6;CL:0002167,2.55e-07,6;CL:0000066,2.58e-07,253|ontology_enrichment_development_v019=UBERON:0006595;4.75e-08;86!CL:0000223;2.54e-07;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!8.15e-20!169;UBERON:0000925!8.15e-20!169;UBERON:0006595!8.15e-20!169;UBERON:0001007!1.68e-16!155;UBERON:0001555!1.68e-16!155;UBERON:0007026!1.68e-16!155;UBERON:0004921!1.97e-15!129;UBERON:0004185!1.97e-15!129;UBERON:0001004!8.12e-14!72;UBERON:0000077!5.95e-12!130;UBERON:0000161!2.08e-09!35;UBERON:0000065!8.91e-09!53;UBERON:0000464!1.19e-08!104;UBERON:0001041!1.72e-08!98;UBERON:0005911!4.87e-08!82;UBERON:0000466!1.70e-07!126;UBERON:0005181!4.12e-07!35;UBERON:0000166!4.38e-07!21;UBERON:0005178!9.87e-07!34;UBERON:0002224!9.87e-07!34|ontology_enrichment_uberon_v019=UBERON:0004921;2.66e-15;33!UBERON:0005409;1.59e-10;22!UBERON:0005181;2.13e-09;35!UBERON:0000160;5.77e-09;17!UBERON:0005178;6.63e-09;34!UBERON:0002224;6.63e-09;34!UBERON:0001555;2.10e-08;54!UBERON:0001041;6.79e-08;14!UBERON:0005911;1.86e-07;36!UBERON:0001007;3.76e-07;81!UBERON:0002048;8.74e-07;22!UBERON:0000117;8.74e-07;22!UBERON:0000171;8.74e-07;22!UBERON:0000170;8.74e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.07e-26,160;UBERON:0000925,1.07e-26,160;UBERON:0006595,1.07e-26,160;UBERON:0004921,4.01e-23,118;UBERON:0001007,1.04e-22,145;UBERON:0001555,1.04e-22,145;UBERON:0007026,1.04e-22,145;UBERON:0001004,1.05e-15,74;UBERON:0001041,9.15e-13,87;UBERON:0005911,6.24e-12,82;UBERON:0005409,2.79e-11,25;UBERON:0005181,1.06e-10,35;UBERON:0000065,1.89e-10,54;UBERON:0000161,2.33e-10,36;UBERON:0005178,3.65e-10,34;UBERON:0002224,3.65e-10,34;UBERON:0000160,5.78e-09,17;UBERON:0000915,2.92e-08,52;UBERON:0000166,2.28e-07,22;UBERON:0001046,2.63e-07,19;UBERON:0002048,9.35e-07,22;UBERON:0000117,9.35e-07,22;UBERON:0000171,9.35e-07,22;UBERON:0000170,9.35e-07,22;UBERON:0005597,9.35e-07,22;UBERON:0000118,9.35e-07,22|phase1_expression=0,0,0,0,0,0,0,0,0,1.72013755551056,9.76921635161399,0,0,0,0,2.01697543935533,0,1.46062018077475,0.487932798790507,0,0,0,0,0,0,0,0,0,2.75354993794233,1.91914699048606,0.928896739896456,6.43594857135249,6.6265302131215,4.43704812200145,0,0,3.52320527201817,0,0,0,0,0,0,0,0,0.485168122375632,0.232429036905685,0,0,0,0.256160706529101,0,0,0,1.35426486594342,0.376484679085209,0,0,0.612167784741805,0,0,0,0,0,0,0,0.622822248995575,0,0,0.217188844705117,6.05399502633369,0,0,0,0,0.419317291016752,0,0,0.16072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,3.16060901730092,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,46.95599856593,13.1146303785315,8.15725774125745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,15.511210565933,6.54141078213801,0,0,3.70745706277013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.1772119082664,0,0,0,4.52608959092673,0,0,0,17.9732593441866,7.36414525595254,5.44928731239107,0,0,0.232387885739037,0.621966330092223,0,0,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0,0,0.237270619111097,0,0,0.38474715694639,0,0,0,0,1.26755034821831,0,0,0,69.7344446539454,0,0.439001141634502,0,0.201057944823262,0.185176890317059,0,0,0,0,0,0,0,0.190254152234598,6.3216351836742,3.43394464837949,0,0,0,1.87467667973554,0.671928512795438,0.283550194484773,0,0,0,0,0,1.86595303986695,1.72943944100354,1.13618190083742,0.126995788584338,0,0,3.4214489204541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99602809578873,11.966458368161,4.14415513436035,0,0,0,7.27898015357825,6.60187258549499,6.93890626149313,7.02848489956279,0,0,0,0,0,0,0,0,0.620304078368662,1.2942852049117,0.106727557803444,0,0,0,0,3.6830873589135,0,0,0,0,0,0,0,0,0,0,41.2130723107432,4.61164881697555,90.3314501461143,0,0,0,0,0.770153371044148,0,0,0.422206515571503,0,0,0,0,0,0,2.54876273045038,0.831076008928724,0,0.438519753291869,0,0,0,0,157.549706809367,0,0,1.14853107599234,0,0,0,0,0,0,0,0,0,0,43.1393629092153,49.0084671781021,88.3079970462522,59.6830907047745,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4680 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1818 | |||
|TSSclassifier=S | |||
|UniProt=P40199 | |||
|association_with_transcript=32bp_to_NM_002483,uc002orm.2_5end | |||
|coexpression_cluster_id=C742 | |||
|description=CAGE_peak_1_at_CEACAM6_5end | |||
|id=chr19:42259430..42259452,+ | |||
|ontology_enrichment_celltype=CL:0002076!1.34e-16!43;CL:0000223!2.14e-11!59;CL:0002368!3.49e-09!13;CL:0002251!4.54e-08!21;CL:0000066!2.45e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.06e-14;42!CL:0002368;4.80e-12;13!CL:0002251;1.12e-08;20!CL:0002202;2.35e-07;9!CL:0002632;2.35e-07;9!CL:0000197;2.79e-07;6!CL:0000098;2.79e-07;6!CL:0002167;2.79e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.87e-18,42;CL:0000223,8.82e-14,58;CL:0002368,4.61e-12,13;CL:0002251,1.11e-08,20;CL:0002202,2.27e-07,9;CL:0002632,2.27e-07,9;CL:0000197,2.55e-07,6;CL:0000098,2.55e-07,6;CL:0002167,2.55e-07,6;CL:0000066,2.58e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0006595;4.75e-08;86!CL:0000223;2.54e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!8.15e-20!169;UBERON:0000925!8.15e-20!169;UBERON:0006595!8.15e-20!169;UBERON:0001007!1.68e-16!155;UBERON:0001555!1.68e-16!155;UBERON:0007026!1.68e-16!155;UBERON:0004921!1.97e-15!129;UBERON:0004185!1.97e-15!129;UBERON:0001004!8.12e-14!72;UBERON:0000077!5.95e-12!130;UBERON:0000161!2.08e-09!35;UBERON:0000065!8.91e-09!53;UBERON:0000464!1.19e-08!104;UBERON:0001041!1.72e-08!98;UBERON:0005911!4.87e-08!82;UBERON:0000466!1.70e-07!126;UBERON:0005181!4.12e-07!35;UBERON:0000166!4.38e-07!21;UBERON:0005178!9.87e-07!34;UBERON:0002224!9.87e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;2.66e-15;33!UBERON:0005409;1.59e-10;22!UBERON:0005181;2.13e-09;35!UBERON:0000160;5.77e-09;17!UBERON:0005178;6.63e-09;34!UBERON:0002224;6.63e-09;34!UBERON:0001555;2.10e-08;54!UBERON:0001041;6.79e-08;14!UBERON:0005911;1.86e-07;36!UBERON:0001007;3.76e-07;81!UBERON:0002048;8.74e-07;22!UBERON:0000117;8.74e-07;22!UBERON:0000171;8.74e-07;22!UBERON:0000170;8.74e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.07e-26,160;UBERON:0000925,1.07e-26,160;UBERON:0006595,1.07e-26,160;UBERON:0004921,4.01e-23,118;UBERON:0001007,1.04e-22,145;UBERON:0001555,1.04e-22,145;UBERON:0007026,1.04e-22,145;UBERON:0001004,1.05e-15,74;UBERON:0001041,9.15e-13,87;UBERON:0005911,6.24e-12,82;UBERON:0005409,2.79e-11,25;UBERON:0005181,1.06e-10,35;UBERON:0000065,1.89e-10,54;UBERON:0000161,2.33e-10,36;UBERON:0005178,3.65e-10,34;UBERON:0002224,3.65e-10,34;UBERON:0000160,5.78e-09,17;UBERON:0000915,2.92e-08,52;UBERON:0000166,2.28e-07,22;UBERON:0001046,2.63e-07,19;UBERON:0002048,9.35e-07,22;UBERON:0000117,9.35e-07,22;UBERON:0000171,9.35e-07,22;UBERON:0000170,9.35e-07,22;UBERON:0005597,9.35e-07,22;UBERON:0000118,9.35e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.72013755551056,9.76921635161399,0,0,0,0,2.01697543935533,0,1.46062018077475,0.487932798790507,0,0,0,0,0,0,0,0,0,2.75354993794233,1.91914699048606,0.928896739896456,6.43594857135249,6.6265302131215,4.43704812200145,0,0,3.52320527201817,0,0,0,0,0,0,0,0,0.485168122375632,0.232429036905685,0,0,0,0.256160706529101,0,0,0,1.35426486594342,0.376484679085209,0,0,0.612167784741805,0,0,0,0,0,0,0,0.622822248995575,0,0,0.217188844705117,6.05399502633369,0,0,0,0,0.419317291016752,0,0,0.16072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,3.16060901730092,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,46.95599856593,13.1146303785315,8.15725774125745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,15.511210565933,6.54141078213801,0,0,3.70745706277013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.1772119082664,0,0,0,4.52608959092673,0,0,0,17.9732593441866,7.36414525595254,5.44928731239107,0,0,0.232387885739037,0.621966330092223,0,0,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0,0,0.237270619111097,0,0,0.38474715694639,0,0,0,0,1.26755034821831,0,0,0,69.7344446539454,0,0.439001141634502,0,0.201057944823262,0.185176890317059,0,0,0,0,0,0,0,0.190254152234598,6.3216351836742,3.43394464837949,0,0,0,1.87467667973554,0.671928512795438,0.283550194484773,0,0,0,0,0,1.86595303986695,1.72943944100354,1.13618190083742,0.126995788584338,0,0,3.4214489204541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99602809578873,11.966458368161,4.14415513436035,0,0,0,7.27898015357825,6.60187258549499,6.93890626149313,7.02848489956279,0,0,0,0,0,0,0,0,0.620304078368662,1.2942852049117,0.106727557803444,0,0,0,0,3.6830873589135,0,0,0,0,0,0,0,0,0,0,41.2130723107432,4.61164881697555,90.3314501461143,0,0,0,0,0.770153371044148,0,0,0.422206515571503,0,0,0,0,0,0,2.54876273045038,0.831076008928724,0,0.438519753291869,0,0,0,0,157.549706809367,0,0,1.14853107599234,0,0,0,0,0,0,0,0,0,0,43.1393629092153,49.0084671781021,88.3079970462522,59.6830907047745,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717056761020258,2.06322986127554,0,0,0,0,0,0,5.09977197445214,42.2290433587546,9.80018863751903,158.444016707319,9.47111819876706,10.1082885400575,22.1715076768338,21.1345528190403,0,0,0.569647187174163,0.238231775457789,0,1.29694662238543,0,1.58625035258854,0,0.962479855263359,0.735120647943095,0,0,0,0,0,3.83010740264733,2.11673582723883,0,0,0,21.1517859293581,2.50634477090067,0,0,0,0.851692475380653,10.3051603426729,4.91585222893533,6.03925491309523,6.84081481018825,5.08009048045305,0,0,0,0,0,74.4819350824715,0,0,0,0,0.71623345421307,0.890894042497916,0,0,0,0,0,1.90012867315194,7.77067154179172,23.2078489046164,0,0,0,0,2.87578723671446,208.73868967176,0,6.01724774385295,0,0,0,0,0,3.38556089410803,0,0,0.227586896570999,2.54253650292766,0,0,0.583209226766509,0,0,0,0,0,0,0,0,13.5241031950245,52.0953250070706,0,0,0,0,5.42301971544263,6.77822191173781,1.06606955203727,0,0,0,0,0,0,0,0,0,0,21.485666857959,0,27.8673340701981,16.0992767396077,153.979596523274,0,0,0,0.202203398942031,1.60515529459758,0,0,62.2213488204045,0,0,19.3585145677862,0,0.63186579628488,0.150323419414493,0,0,0,0,0,0.569219092059585,0,2.08271686002157,1.27390116638691,0.261177619741208,0.17472666824203,0,0,0,0,238.205024495558,0,44.0662444522038,0,0,0.0633107959558787,208.4577739953,2.16428814679141,228.394704371107,0,412.819045146514,0,0,15.5579181827202,0,3.77110455386873,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,2.00854311697685,4.29974223915048,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0.335434687599266,0.0788057072991982,0.891727998294968,0,0,0,2.85878130549347,9.93137955548147,0,0,0,0,0,0,0,0,1.90517903781507,2.65013777824443,0.129282956361551,0,56.4586565018287,1432.18412534748,492.503546762208,7.3886023396843,140.427039762699,0,0,0,0.638341257770182,0,0,0,0,101.614000273902,0,0,0.250381861413,0.573409195690071,0.110929051536852,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,0,0,0,1.5652351854352,0,0,0,0,0,3.24823631914946,2.78667122089031,0,1.71697852591396,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0.817826971279221,0,0,21.3425244592213,0,0.426766918776564,0,0,0,23.6396368045861,4.97661808026378,0,0,2.83078695340614,0,0.169732529954025,0.425149840203366,230.024778464708,1.11728983594649,0,0,2.40171224485641,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0.196295437002051,14.1563668017288,11.7394303053875,0,0,0,0,0.300841313397029,0,0,0,0,13.3070477595341,0,0,0.206686796501184,0.0634158101939068,0,1.09651553371436,12.9014906381217,1.23109871051734,59.5372912800514,0,0,0,0,0.620916591138472,0.115233987555779,0,0,0,0.354581522651905,4.89418168325104,1.88383422841234,0,23.5428617183583,16.4368569691709,1.07963795609311,0,0.285906176706625,0,0,0,0,12.6401860139452,0.85359238546975,3.4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| |||
|short_description=p1@CEACAM6 | |||
}} |
Revision as of 20:50, 11 September 2013
Short description: | p1@CEACAM6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CEACAM6_5end |
Coexpression cluster: | C742_lung_gastric_trachea_bile_esophagus_gall_neuroectodermal |
Association with transcript: | 32bp_to_NM_002483, uc002orm.2_5end |
EntrezGene: | CEACAM6 |
HGNC: | 1818 |
UniProt: | P40199 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.87e-18 | 42 |
endodermal cell | 8.82e-14 | 58 |
respiratory epithelial cell | 4.61e-12 | 13 |
epithelial cell of alimentary canal | 1.11e-08 | 20 |
epithelial cell of tracheobronchial tree | 2.27e-07 | 9 |
epithelial cell of lower respiratory tract | 2.27e-07 | 9 |
receptor cell | 2.55e-07 | 6 |
sensory epithelial cell | 2.55e-07 | 6 |
olfactory epithelial cell | 2.55e-07 | 6 |
epithelial cell | 2.58e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.07e-26 | 160 |
endoderm | 1.07e-26 | 160 |
presumptive endoderm | 1.07e-26 | 160 |
subdivision of digestive tract | 4.01e-23 | 118 |
digestive system | 1.04e-22 | 145 |
digestive tract | 1.04e-22 | 145 |
primitive gut | 1.04e-22 | 145 |
respiratory system | 1.05e-15 | 74 |
foregut | 9.15e-13 | 87 |
endo-epithelium | 6.24e-12 | 82 |
gastrointestinal system | 2.79e-11 | 25 |
thoracic segment organ | 1.06e-10 | 35 |
respiratory tract | 1.89e-10 | 54 |
orifice | 2.33e-10 | 36 |
thoracic cavity element | 3.65e-10 | 34 |
thoracic cavity | 3.65e-10 | 34 |
intestine | 5.78e-09 | 17 |
thoracic segment of trunk | 2.92e-08 | 52 |
oral opening | 2.28e-07 | 22 |
hindgut | 2.63e-07 | 19 |
lung | 9.35e-07 | 22 |
respiratory tube | 9.35e-07 | 22 |
respiration organ | 9.35e-07 | 22 |
pair of lungs | 9.35e-07 | 22 |
lung primordium | 9.35e-07 | 22 |
lung bud | 9.35e-07 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.