FFCP PHASE1:Hg19::chr19:4555517..4555543,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C65|description=CAGE_peak_at_chr19:4555517..4555543,-|id=chr19:4555517..4555543,-|ontology_enrichment_celltype=CL:0002057!9.91e-30!42;CL:0000860!7.00e-27!45;CL:0002009!2.54e-24!65;CL:0002194!3.32e-24!63;CL:0000576!3.32e-24!63;CL:0000040!3.32e-24!63;CL:0000559!3.32e-24!63;CL:0000115!2.93e-22!35;CL:0000557!4.70e-21!71;CL:0000839!2.20e-20!70;CL:0002139!2.97e-19!24;CL:0000766!8.46e-19!76;CL:0002078!1.04e-15!44;CL:0000071!2.13e-13!18;CL:0002546!2.13e-13!18;CL:1000413!2.97e-11!9;CL:0000213!5.66e-11!57;CL:0000215!5.66e-11!57;CL:0000763!7.57e-10!112;CL:0000049!7.57e-10!112;CL:0002544!8.55e-08!6;CL:0005020!1.41e-07!6;CL:0002138!1.41e-07!6;CL:0005022!1.41e-07!6;CL:0002087!5.77e-07!119;CL:0002031!9.59e-07!124|ontology_enrichment_celltype_v019=CL:0000860;4.72e-91;33!CL:0002057;4.72e-91;33!CL:0000473;1.31e-72;39!CL:0000234;1.31e-72;39!CL:0000576;3.24e-42;48!CL:0000766;9.76e-24;69!CL:0000115;1.70e-15;36!CL:0002139;2.96e-12;24!CL:0000763;3.60e-12;100!CL:1000413;3.34e-11;9!CL:0000071;2.72e-10;18!CL:0002087;1.28e-09;104!CL:0002545;4.32e-09;2!CL:0002078;1.39e-08;45!CL:0002188;3.45e-08;5!CL:0000738;7.67e-08;136!CL:0000213;8.32e-07;58!CL:0000215;8.32e-07;58|ontology_enrichment_celltype_v019_2=CL:0000860,4.14e-77,42;CL:0002057,4.14e-77,42;CL:0000473,1.41e-76,48;CL:0000234,1.41e-76,48;CL:0002194,7.76e-60,59;CL:0000576,7.76e-60,59;CL:0000040,7.76e-60,59;CL:0000559,7.76e-60,59;CL:0002009,1.12e-57,61;CL:0000839,7.70e-53,66;CL:0000557,5.87e-52,67;CL:0000766,6.55e-48,72;CL:0000763,9.90e-30,108;CL:0000049,9.90e-30,108;CL:0002087,1.66e-27,115;CL:0002031,4.46e-26,120;CL:0000738,3.34e-22,136;CL:0002032,1.09e-17,161;CL:0000837,1.09e-17,161;CL:0000037,1.15e-16,168;CL:0000115,1.21e-16,36;CL:0000988,1.81e-15,177;CL:0002078,9.12e-13,45;CL:0002139,2.64e-12,24;CL:1000413,2.95e-11,9;CL:0000071,2.41e-10,18;CL:0002546,2.41e-10,18;CL:0000213,2.62e-09,58;CL:0000215,2.62e-09,58;CL:0002545,3.66e-09,2;CL:0002188,4.32e-08,5|ontology_enrichment_development_v019=CL:0002057;2.95e-57;42!CL:0000049;8.79e-12;108!CL:0002546;2.72e-10;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002405!6.92e-19!115;UBERON:0002371!2.76e-18!80;UBERON:0001474!4.35e-17!86;UBERON:0002193!4.42e-16!112;UBERON:0002390!1.85e-13!102;UBERON:0003061!1.85e-13!102;UBERON:0001986!2.13e-13!18;UBERON:0004638!2.13e-13!18;UBERON:0004852!2.13e-13!18;UBERON:0004765!2.57e-13!101;UBERON:0001434!2.57e-13!101;UBERON:0003915!2.97e-11!9;UBERON:0004700!2.97e-11!9;UBERON:0001917!2.97e-11!9;UBERON:0003081!7.68e-11!216;UBERON:0000487!4.22e-10!22;UBERON:0001017!5.88e-10!82;UBERON:0005743!1.31e-09!86;UBERON:0000468!3.40e-09!659;UBERON:0000467!3.65e-09!625;UBERON:0000480!4.38e-09!626;UBERON:0003075!7.16e-09!86;UBERON:0007284!7.16e-09!86;UBERON:0000955!8.13e-09!69;UBERON:0006238!8.13e-09!69;UBERON:0000922!1.45e-08!612;UBERON:0001049!1.66e-08!57;UBERON:0005068!1.66e-08!57;UBERON:0006241!1.66e-08!57;UBERON:0007135!1.66e-08!57;UBERON:0000073!2.22e-08!94;UBERON:0001016!2.22e-08!94;UBERON:0006914!2.37e-08!25;UBERON:0007023!2.95e-08!115;UBERON:0002346!4.78e-08!90;UBERON:0002616!5.72e-08!59;UBERON:0000923!1.71e-07!604;UBERON:0005291!1.71e-07!604;UBERON:0006598!1.71e-07!604;UBERON:0002532!1.71e-07!604;UBERON:0002050!2.02e-07!605;UBERON:0005423!2.02e-07!605;UBERON:0001893!3.51e-07!34;UBERON:0002020!4.37e-07!34;UBERON:0003528!4.37e-07!34;UBERON:0001869!5.31e-07!32|ontology_enrichment_uberon_v019=UBERON:0003915;3.34e-11;9!UBERON:0004700;3.34e-11;9!UBERON:0001917;3.34e-11;9!UBERON:0004638;2.72e-10;18!UBERON:0001986;2.72e-10;18!UBERON:0004852;2.72e-10;18!UBERON:0005800;4.32e-09;2!UBERON:0001515;4.32e-09;2!UBERON:0000487;2.93e-08;22!UBERON:0006914;3.67e-07;25|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.74e-45,76;UBERON:0001474,2.81e-41,82;UBERON:0002405,6.85e-41,93;UBERON:0004765,5.07e-37,90;UBERON:0002193,3.09e-34,108;UBERON:0002390,1.87e-33,98;UBERON:0003061,1.87e-33,98;UBERON:0001434,1.19e-32,100;UBERON:0003081,2.73e-29,203;UBERON:0002204,3.66e-18,167;UBERON:0000926,7.06e-17,315;UBERON:0004120,7.06e-17,315;UBERON:0006603,7.06e-17,315;UBERON:0003915,2.95e-11,9;UBERON:0004700,2.95e-11,9;UBERON:0001917,2.95e-11,9;UBERON:0004638,2.41e-10,18;UBERON:0001986,2.41e-10,18;UBERON:0004852,2.41e-10,18;UBERON:0005800,3.66e-09,2;UBERON:0001515,3.66e-09,2;UBERON:0000487,2.66e-08,22;UBERON:0006914,3.38e-07,25|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.626909442956176,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0.671746422719773,0.32389366601898,0.515151135268373,4.07115068582781,4.1566353805769,4.60909716256851,3.95129362739664,5.34518254428373,8.05236564327269,6.04154023876516,4.86705342405291,1.6553756092201,1.03423704220986,9.03678557017357,4.06279459783025,7.9061782607894,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C65 | |||
|description=CAGE_peak_at_chr19:4555517..4555543,- | |||
|id=chr19:4555517..4555543,- | |||
|ontology_enrichment_celltype=CL:0002057!9.91e-30!42;CL:0000860!7.00e-27!45;CL:0002009!2.54e-24!65;CL:0002194!3.32e-24!63;CL:0000576!3.32e-24!63;CL:0000040!3.32e-24!63;CL:0000559!3.32e-24!63;CL:0000115!2.93e-22!35;CL:0000557!4.70e-21!71;CL:0000839!2.20e-20!70;CL:0002139!2.97e-19!24;CL:0000766!8.46e-19!76;CL:0002078!1.04e-15!44;CL:0000071!2.13e-13!18;CL:0002546!2.13e-13!18;CL:1000413!2.97e-11!9;CL:0000213!5.66e-11!57;CL:0000215!5.66e-11!57;CL:0000763!7.57e-10!112;CL:0000049!7.57e-10!112;CL:0002544!8.55e-08!6;CL:0005020!1.41e-07!6;CL:0002138!1.41e-07!6;CL:0005022!1.41e-07!6;CL:0002087!5.77e-07!119;CL:0002031!9.59e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.72e-91;33!CL:0002057;4.72e-91;33!CL:0000473;1.31e-72;39!CL:0000234;1.31e-72;39!CL:0000576;3.24e-42;48!CL:0000766;9.76e-24;69!CL:0000115;1.70e-15;36!CL:0002139;2.96e-12;24!CL:0000763;3.60e-12;100!CL:1000413;3.34e-11;9!CL:0000071;2.72e-10;18!CL:0002087;1.28e-09;104!CL:0002545;4.32e-09;2!CL:0002078;1.39e-08;45!CL:0002188;3.45e-08;5!CL:0000738;7.67e-08;136!CL:0000213;8.32e-07;58!CL:0000215;8.32e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.14e-77,42;CL:0002057,4.14e-77,42;CL:0000473,1.41e-76,48;CL:0000234,1.41e-76,48;CL:0002194,7.76e-60,59;CL:0000576,7.76e-60,59;CL:0000040,7.76e-60,59;CL:0000559,7.76e-60,59;CL:0002009,1.12e-57,61;CL:0000839,7.70e-53,66;CL:0000557,5.87e-52,67;CL:0000766,6.55e-48,72;CL:0000763,9.90e-30,108;CL:0000049,9.90e-30,108;CL:0002087,1.66e-27,115;CL:0002031,4.46e-26,120;CL:0000738,3.34e-22,136;CL:0002032,1.09e-17,161;CL:0000837,1.09e-17,161;CL:0000037,1.15e-16,168;CL:0000115,1.21e-16,36;CL:0000988,1.81e-15,177;CL:0002078,9.12e-13,45;CL:0002139,2.64e-12,24;CL:1000413,2.95e-11,9;CL:0000071,2.41e-10,18;CL:0002546,2.41e-10,18;CL:0000213,2.62e-09,58;CL:0000215,2.62e-09,58;CL:0002545,3.66e-09,2;CL:0002188,4.32e-08,5 | |||
|ontology_enrichment_development_v019=CL:0002057;2.95e-57;42!CL:0000049;8.79e-12;108!CL:0002546;2.72e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!6.92e-19!115;UBERON:0002371!2.76e-18!80;UBERON:0001474!4.35e-17!86;UBERON:0002193!4.42e-16!112;UBERON:0002390!1.85e-13!102;UBERON:0003061!1.85e-13!102;UBERON:0001986!2.13e-13!18;UBERON:0004638!2.13e-13!18;UBERON:0004852!2.13e-13!18;UBERON:0004765!2.57e-13!101;UBERON:0001434!2.57e-13!101;UBERON:0003915!2.97e-11!9;UBERON:0004700!2.97e-11!9;UBERON:0001917!2.97e-11!9;UBERON:0003081!7.68e-11!216;UBERON:0000487!4.22e-10!22;UBERON:0001017!5.88e-10!82;UBERON:0005743!1.31e-09!86;UBERON:0000468!3.40e-09!659;UBERON:0000467!3.65e-09!625;UBERON:0000480!4.38e-09!626;UBERON:0003075!7.16e-09!86;UBERON:0007284!7.16e-09!86;UBERON:0000955!8.13e-09!69;UBERON:0006238!8.13e-09!69;UBERON:0000922!1.45e-08!612;UBERON:0001049!1.66e-08!57;UBERON:0005068!1.66e-08!57;UBERON:0006241!1.66e-08!57;UBERON:0007135!1.66e-08!57;UBERON:0000073!2.22e-08!94;UBERON:0001016!2.22e-08!94;UBERON:0006914!2.37e-08!25;UBERON:0007023!2.95e-08!115;UBERON:0002346!4.78e-08!90;UBERON:0002616!5.72e-08!59;UBERON:0000923!1.71e-07!604;UBERON:0005291!1.71e-07!604;UBERON:0006598!1.71e-07!604;UBERON:0002532!1.71e-07!604;UBERON:0002050!2.02e-07!605;UBERON:0005423!2.02e-07!605;UBERON:0001893!3.51e-07!34;UBERON:0002020!4.37e-07!34;UBERON:0003528!4.37e-07!34;UBERON:0001869!5.31e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0003915;3.34e-11;9!UBERON:0004700;3.34e-11;9!UBERON:0001917;3.34e-11;9!UBERON:0004638;2.72e-10;18!UBERON:0001986;2.72e-10;18!UBERON:0004852;2.72e-10;18!UBERON:0005800;4.32e-09;2!UBERON:0001515;4.32e-09;2!UBERON:0000487;2.93e-08;22!UBERON:0006914;3.67e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.74e-45,76;UBERON:0001474,2.81e-41,82;UBERON:0002405,6.85e-41,93;UBERON:0004765,5.07e-37,90;UBERON:0002193,3.09e-34,108;UBERON:0002390,1.87e-33,98;UBERON:0003061,1.87e-33,98;UBERON:0001434,1.19e-32,100;UBERON:0003081,2.73e-29,203;UBERON:0002204,3.66e-18,167;UBERON:0000926,7.06e-17,315;UBERON:0004120,7.06e-17,315;UBERON:0006603,7.06e-17,315;UBERON:0003915,2.95e-11,9;UBERON:0004700,2.95e-11,9;UBERON:0001917,2.95e-11,9;UBERON:0004638,2.41e-10,18;UBERON:0001986,2.41e-10,18;UBERON:0004852,2.41e-10,18;UBERON:0005800,3.66e-09,2;UBERON:0001515,3.66e-09,2;UBERON:0000487,2.66e-08,22;UBERON:0006914,3.38e-07,25 | |||
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|short_description=p@chr19:4555517..4555543,- | |||
}} |
Revision as of 21:11, 11 September 2013
Short description: | p@chr19:4555517..4555543, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:4555517..4555543, - |
Coexpression cluster: | C65_CD14_Eosinophils_Monocytederived_Basophils_immature_Macrophage_Neutrophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.74e-45 | 76 |
bone element | 2.81e-41 | 82 |
immune system | 6.85e-41 | 93 |
skeletal element | 5.07e-37 | 90 |
hemolymphoid system | 3.09e-34 | 108 |
hematopoietic system | 1.87e-33 | 98 |
blood island | 1.87e-33 | 98 |
skeletal system | 1.19e-32 | 100 |
lateral plate mesoderm | 2.73e-29 | 203 |
musculoskeletal system | 3.66e-18 | 167 |
mesoderm | 7.06e-17 | 315 |
mesoderm-derived structure | 7.06e-17 | 315 |
presumptive mesoderm | 7.06e-17 | 315 |
endothelial tube | 2.95e-11 | 9 |
arterial system endothelium | 2.95e-11 | 9 |
endothelium of artery | 2.95e-11 | 9 |
blood vessel endothelium | 2.41e-10 | 18 |
endothelium | 2.41e-10 | 18 |
cardiovascular system endothelium | 2.41e-10 | 18 |
segment of aorta | 3.66e-09 | 2 |
thoracic aorta | 3.66e-09 | 2 |
simple squamous epithelium | 2.66e-08 | 22 |
squamous epithelium | 3.38e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.