FFCP PHASE1:Mm9::chr11:58996296..58996303,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=118454|HGNC=|MCL_coexpression_id=293|UniProt=Q8BQU6|association_with_transcript=24bp_to_ENSMUST00000108793,NM_175452,uc007jde.2_5end|description=CAGE_peak_3_at_Gjc2_5end|id=chr11:58996296..58996303,-|ontology_enrichment_celltype=CL:0002614!2.91e-13!3;CL:0002611!6.33e-10!2;CL:0000117!1.96e-08!23;CL:0000337!1.96e-08!23;CL:0002610!9.78e-07!3|ontology_enrichment_celltype_v019_2=CL:0002611,2.38e-26,2;CL:0002610,1.59e-17,3;CL:0000117,6.29e-14,23;CL:0000337,6.29e-14,23;CL:0000540,8.36e-10,33;CL:0000047,8.36e-10,33;CL:0000031,8.36e-10,33;CL:0000404,8.36e-10,33;CL:0000393,2.46e-08,39;CL:0000211,2.46e-08,39;CL:0002319,1.40e-07,43;CL:0000221,2.05e-07,44;CL:0000133,2.05e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002298!3.81e-24!6;UBERON:0001049!1.47e-17!52;UBERON:0005068!1.47e-17!52;UBERON:0006241!1.47e-17!52;UBERON:0007135!1.47e-17!52;UBERON:0001017!2.13e-17!73;UBERON:0005743!2.13e-17!73;UBERON:0000073!7.51e-17!75;UBERON:0001016!7.51e-17!75;UBERON:0002950!1.30e-16!4;UBERON:0001891!1.30e-16!4;UBERON:0009616!1.30e-16!4;UBERON:0002616!3.03e-16!49;UBERON:0000955!7.22e-16!50;UBERON:0006238!7.22e-16!50;UBERON:0002038!2.91e-13!3;UBERON:0002308!2.91e-13!3;UBERON:0009663!2.91e-13!3;UBERON:0009661!2.91e-13!3;UBERON:0006331!2.91e-13!3;UBERON:0000125!2.91e-13!3;UBERON:0003076!3.07e-12!12;UBERON:0003057!3.07e-12!12;UBERON:0002346!4.13e-12!71;UBERON:0003075!4.13e-12!71;UBERON:0007284!4.13e-12!71;UBERON:0000033!4.75e-12!63;UBERON:0004121!1.52e-11!102;UBERON:0000924!1.52e-11!102;UBERON:0006601!1.52e-11!102;UBERON:0002256!6.33e-10!2;UBERON:0001896!3.56e-09!2;UBERON:0005290!3.56e-09!2;UBERON:0010096!3.56e-09!2;UBERON:0002020!1.27e-08!34;UBERON:0003080!1.43e-08!40;UBERON:0002420!1.77e-08!8;UBERON:0007245!1.77e-08!8;UBERON:0010009!1.77e-08!8;UBERON:0010011!1.77e-08!8;UBERON:0000454!1.77e-08!8;UBERON:0007811!4.11e-08!86;UBERON:0000153!3.40e-07!94;UBERON:0002780!3.52e-07!39;UBERON:0001890!3.52e-07!39;UBERON:0006240!3.52e-07!39;UBERON:0002240!4.08e-07!6;UBERON:0005174!4.08e-07!6;UBERON:0001137!4.08e-07!6;UBERON:0004684!9.78e-07!3;UBERON:0002275!9.78e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0002256,2.38e-26,2;UBERON:0004684,1.59e-17,3;UBERON:0002275,1.59e-17,3;UBERON:0000073,1.59e-11,54;UBERON:0001948,3.52e-11,5;UBERON:0002315,3.52e-11,5;UBERON:0003076,3.36e-10,12;UBERON:0003057,3.36e-10,12;UBERON:0002240,1.78e-09,6;UBERON:0005174,1.78e-09,6;UBERON:0001137,1.78e-09,6;UBERON:0001017,1.47e-08,73;UBERON:0001016,2.47e-08,75;UBERON:0001896,1.52e-07,2;UBERON:0002298,1.52e-07,2;UBERON:0005290,1.52e-07,2;UBERON:0010096,1.52e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,2.57085885963423,1.76694832761291,0,0,0,0,1.0214987046815,1.99688493233117,0,0,0,0.837548997004143,1.12552522006336,0.916789486660861,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628340120440365,0,0,0,0,0.149790639404823,0.457500602818626,0,0.173824320192276,0.255715457330331,0.83115217823824,0.811206315338788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630869845692382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,1.28932855251423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.927126510052548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14579102687879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463735671240843|short_description=p3@Gjc2}} | ||
|EntrezGene=118454 | |||
|HGNC= | |||
|MCL_coexpression_id=293 | |||
|UniProt=Q8BQU6 | |||
|association_with_transcript=24bp_to_ENSMUST00000108793,NM_175452,uc007jde.2_5end | |||
|description=CAGE_peak_3_at_Gjc2_5end | |||
|id=chr11:58996296..58996303,- | |||
|ontology_enrichment_celltype=CL:0002614!2.91e-13!3;CL:0002611!6.33e-10!2;CL:0000117!1.96e-08!23;CL:0000337!1.96e-08!23;CL:0002610!9.78e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002611,2.38e-26,2;CL:0002610,1.59e-17,3;CL:0000117,6.29e-14,23;CL:0000337,6.29e-14,23;CL:0000540,8.36e-10,33;CL:0000047,8.36e-10,33;CL:0000031,8.36e-10,33;CL:0000404,8.36e-10,33;CL:0000393,2.46e-08,39;CL:0000211,2.46e-08,39;CL:0002319,1.40e-07,43;CL:0000221,2.05e-07,44;CL:0000133,2.05e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002298!3.81e-24!6;UBERON:0001049!1.47e-17!52;UBERON:0005068!1.47e-17!52;UBERON:0006241!1.47e-17!52;UBERON:0007135!1.47e-17!52;UBERON:0001017!2.13e-17!73;UBERON:0005743!2.13e-17!73;UBERON:0000073!7.51e-17!75;UBERON:0001016!7.51e-17!75;UBERON:0002950!1.30e-16!4;UBERON:0001891!1.30e-16!4;UBERON:0009616!1.30e-16!4;UBERON:0002616!3.03e-16!49;UBERON:0000955!7.22e-16!50;UBERON:0006238!7.22e-16!50;UBERON:0002038!2.91e-13!3;UBERON:0002308!2.91e-13!3;UBERON:0009663!2.91e-13!3;UBERON:0009661!2.91e-13!3;UBERON:0006331!2.91e-13!3;UBERON:0000125!2.91e-13!3;UBERON:0003076!3.07e-12!12;UBERON:0003057!3.07e-12!12;UBERON:0002346!4.13e-12!71;UBERON:0003075!4.13e-12!71;UBERON:0007284!4.13e-12!71;UBERON:0000033!4.75e-12!63;UBERON:0004121!1.52e-11!102;UBERON:0000924!1.52e-11!102;UBERON:0006601!1.52e-11!102;UBERON:0002256!6.33e-10!2;UBERON:0001896!3.56e-09!2;UBERON:0005290!3.56e-09!2;UBERON:0010096!3.56e-09!2;UBERON:0002020!1.27e-08!34;UBERON:0003080!1.43e-08!40;UBERON:0002420!1.77e-08!8;UBERON:0007245!1.77e-08!8;UBERON:0010009!1.77e-08!8;UBERON:0010011!1.77e-08!8;UBERON:0000454!1.77e-08!8;UBERON:0007811!4.11e-08!86;UBERON:0000153!3.40e-07!94;UBERON:0002780!3.52e-07!39;UBERON:0001890!3.52e-07!39;UBERON:0006240!3.52e-07!39;UBERON:0002240!4.08e-07!6;UBERON:0005174!4.08e-07!6;UBERON:0001137!4.08e-07!6;UBERON:0004684!9.78e-07!3;UBERON:0002275!9.78e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002256,2.38e-26,2;UBERON:0004684,1.59e-17,3;UBERON:0002275,1.59e-17,3;UBERON:0000073,1.59e-11,54;UBERON:0001948,3.52e-11,5;UBERON:0002315,3.52e-11,5;UBERON:0003076,3.36e-10,12;UBERON:0003057,3.36e-10,12;UBERON:0002240,1.78e-09,6;UBERON:0005174,1.78e-09,6;UBERON:0001137,1.78e-09,6;UBERON:0001017,1.47e-08,73;UBERON:0001016,2.47e-08,75;UBERON:0001896,1.52e-07,2;UBERON:0002298,1.52e-07,2;UBERON:0005290,1.52e-07,2;UBERON:0010096,1.52e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,2.57085885963423,1.76694832761291,0,0,0,0,1.0214987046815,1.99688493233117,0,0,0,0.837548997004143,1.12552522006336,0.916789486660861,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628340120440365,0,0,0,0,0.149790639404823,0.457500602818626,0,0.173824320192276,0.255715457330331,0.83115217823824,0.811206315338788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630869845692382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,1.28932855251423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.927126510052548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14579102687879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463735671240843 | |||
|short_description=p3@Gjc2 | |||
}} |
Revision as of 20:09, 12 September 2013
Short description: | p3@Gjc2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gjc2_5end |
Coexpression cluster: | MCL_coexpression_mm9:293 |
Association with transcript: | 24bp_to_ENSMUST00000108793, NM_175452, uc007jde.2_5end |
EntrezGene: | Gjc2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the dorsal spinal cord | 2.38e-26 | 2 |
raphe nuclei neuron | 1.59e-17 | 3 |
CNS neuron (sensu Vertebrata) | 6.29e-14 | 23 |
neuroblast (sensu Vertebrata) | 6.29e-14 | 23 |
neuron | 8.36e-10 | 33 |
neuronal stem cell | 8.36e-10 | 33 |
neuroblast | 8.36e-10 | 33 |
electrically signaling cell | 8.36e-10 | 33 |
electrically responsive cell | 2.46e-08 | 39 |
electrically active cell | 2.46e-08 | 39 |
neural cell | 1.40e-07 | 43 |
ectodermal cell | 2.05e-07 | 44 |
neurectodermal cell | 2.05e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
dorsal horn of spinal cord | 2.38e-26 | 2 |
raphe nuclei | 1.59e-17 | 3 |
reticular formation | 1.59e-17 | 3 |
regional part of nervous system | 1.59e-11 | 54 |
regional part of spinal cord | 3.52e-11 | 5 |
gray matter of spinal cord | 3.52e-11 | 5 |
posterior neural tube | 3.36e-10 | 12 |
chordal neural plate | 3.36e-10 | 12 |
spinal cord | 1.78e-09 | 6 |
dorsal region element | 1.78e-09 | 6 |
dorsum | 1.78e-09 | 6 |
central nervous system | 1.47e-08 | 73 |
nervous system | 2.47e-08 | 75 |
medulla oblongata | 1.52e-07 | 2 |
brainstem | 1.52e-07 | 2 |
myelencephalon | 1.52e-07 | 2 |
future myelencephalon | 1.52e-07 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.