FFCP PHASE1:Hg19::chr5:126113041..126113051,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4001|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6637|TSSclassifier=S|UniProt=|association_with_transcript=-19bp_to_ENST00000463908_5end|coexpression_cluster_id=C21|description=CAGE_peak_13_at_LMNB1_5end|id=chr5:126113041..126113051,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000182;8.86e-16;12!CL:0002363;3.92e-07;2|ontology_enrichment_celltype_v019_2=CL:0000182,1.16e-15,12;CL:0002363,5.60e-07,2;CL:0000008,5.60e-07,2|ontology_enrichment_development_v019=UBERON:0004161;4.03e-10;11!UBERON:0009497;1.20e-08;13!CL:0000008;3.92e-07;2|ontology_enrichment_disease=DOID:305!1.20e-13!106;DOID:162!5.90e-12!235;DOID:0050687!1.15e-11!143;DOID:14566!1.36e-11!239|ontology_enrichment_disease_v019=DOID:1799;5.37e-13;1!DOID:10165;5.37e-13;1!DOID:1798;5.37e-13;1|ontology_enrichment_disease_v019_2=DOID:1799,6.06e-13,1;DOID:10165,6.06e-13,1;DOID:1798,6.06e-13,1|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0002331;1.73e-11;10!UBERON:0002107;4.62e-10;19!UBERON:0006925;4.62e-10;19!UBERON:0000178;7.89e-08;15!UBERON:0000179;7.89e-08;15!UBERON:0000463;7.89e-08;15!UBERON:0002423;1.08e-07;25!UBERON:0003566;3.92e-07;2!UBERON:0001777;3.92e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0002331,1.73e-11,10;UBERON:0000358,1.73e-11,10;UBERON:0000307,1.73e-11,10;UBERON:0000091,1.73e-11,10;UBERON:0000087,1.73e-11,10;UBERON:0007010,1.73e-11,10;UBERON:0007806,1.73e-11,10;UBERON:0008780,1.73e-11,10;UBERON:0005728,1.73e-11,10;UBERON:0002107,5.47e-10,19;UBERON:0006925,5.47e-10,19;UBERON:0008836,5.47e-10,19;UBERON:0008835,1.18e-08,22;UBERON:0003894,1.18e-08,22;UBERON:0009854,2.74e-08,23;UBERON:0000178,7.89e-08,15;UBERON:0000179,7.89e-08,15;UBERON:0000463,7.89e-08,15;UBERON:0007499,1.22e-07,25;UBERON:0009497,1.22e-07,25;UBERON:0000015,1.22e-07,25;UBERON:0002423,1.22e-07,25;UBERON:0006235,1.22e-07,25;UBERON:0004161,1.22e-07,25;UBERON:0009856,2.36e-07,26;UBERON:0003566,5.60e-07,2;UBERON:0001777,5.60e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.547497700291537,0.502170558379211,0.0764134057479513,0,0.157421562627358,0,0,0,0,0,0,0.154934401160603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0.256160706529101,0.236482229888585,0.344745680736619,0,0,0,0,0,0,0,0,0.329851300186716,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590129310341499,0,0.411202997999018,0,0,0,1.94826728407911,0.111410456885174,0.294605907474837,0,0,0,0.260118695119756,0,0,0,0.296573126324121,0,0,0.339928028092699,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0.144846518960824,0,0,0.189069634328136,0.221729397462564,0.175669571386252,0.130979075497713,0,0,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0.570471821544449,0,0,0.161872944368132,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0.504867548488229,0,0,0,0,0,0,0,0,0.243947412259191,0.530119073285941,0.232387885739037,0.310983165046111,0,0.72995471815166,0,0,0,0,0,0.118306800039844,0.505754070234305,0.482022059766964,0.55146986366197,0.653638332277218,0.474541238222193,0.674156540800822,0,0,0.738155454624648,0,0,0,1.26755034821831,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1466765716419,0,0,0,0,0,0,1.41849132023278,0,0,0,0,0.325736184293735,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0.336255431980582,0.394061520403854,0,0,0,0,1.54657762555539,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0.213455115606889,0,0,0.30239029332968,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0.116210378459959,0,0,0,0.114814448164607,0,0,0,0,0,1.46139224653261,0,0,0.170093705276516,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0.0915694648183434,0.082509499920588,0,0,0,0,0,0.15350367472613,0.137836572484531,0.214840489736547,0.145016693914229,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0.185803175125719,0,0.355709216742071,0.318852545457645,0,0,0.211673582723883,0,0,0,1.25343916618419,0,0,0,0,0,0,0,0,0.166849141711909,0.19538809540204,0.556812347790485,0,0,0.99921590399346,0,0.561421621224659,0,0.242721043499027,0,0,0,0,0,0,0,0.111308705022906,0.329607748453519,0,0,0,0.251932747854276,0.102268682502155,0.246169610922139,0,0.449341755736634,0,0,0,0,0,0,0,1.99613798001194,0.520855522170466,0.0874599999961957,0,0.1137934482855,0.508507300585533,0,0,0,0.520874984799877,0,0,0,0.110579259931225,0,0,0.10893846351899,0.139423744278603,0,0,0.23056390438806,0.628303510868405,0.108647371922008,0,0.0915975934018623,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4001 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6637 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-19bp_to_ENST00000463908_5end | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_13_at_LMNB1_5end | |||
|id=chr5:126113041..126113051,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000182;8.86e-16;12!CL:0002363;3.92e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.16e-15,12;CL:0002363,5.60e-07,2;CL:0000008,5.60e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.03e-10;11!UBERON:0009497;1.20e-08;13!CL:0000008;3.92e-07;2 | |||
|ontology_enrichment_disease=DOID:305!1.20e-13!106;DOID:162!5.90e-12!235;DOID:0050687!1.15e-11!143;DOID:14566!1.36e-11!239 | |||
|ontology_enrichment_disease_v019=DOID:1799;5.37e-13;1!DOID:10165;5.37e-13;1!DOID:1798;5.37e-13;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,6.06e-13,1;DOID:10165,6.06e-13,1;DOID:1798,6.06e-13,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;1.73e-11;10!UBERON:0002107;4.62e-10;19!UBERON:0006925;4.62e-10;19!UBERON:0000178;7.89e-08;15!UBERON:0000179;7.89e-08;15!UBERON:0000463;7.89e-08;15!UBERON:0002423;1.08e-07;25!UBERON:0003566;3.92e-07;2!UBERON:0001777;3.92e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,1.73e-11,10;UBERON:0000358,1.73e-11,10;UBERON:0000307,1.73e-11,10;UBERON:0000091,1.73e-11,10;UBERON:0000087,1.73e-11,10;UBERON:0007010,1.73e-11,10;UBERON:0007806,1.73e-11,10;UBERON:0008780,1.73e-11,10;UBERON:0005728,1.73e-11,10;UBERON:0002107,5.47e-10,19;UBERON:0006925,5.47e-10,19;UBERON:0008836,5.47e-10,19;UBERON:0008835,1.18e-08,22;UBERON:0003894,1.18e-08,22;UBERON:0009854,2.74e-08,23;UBERON:0000178,7.89e-08,15;UBERON:0000179,7.89e-08,15;UBERON:0000463,7.89e-08,15;UBERON:0007499,1.22e-07,25;UBERON:0009497,1.22e-07,25;UBERON:0000015,1.22e-07,25;UBERON:0002423,1.22e-07,25;UBERON:0006235,1.22e-07,25;UBERON:0004161,1.22e-07,25;UBERON:0009856,2.36e-07,26;UBERON:0003566,5.60e-07,2;UBERON:0001777,5.60e-07,2 | |||
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| |||
|short_description=p13@LMNB1 | |||
}} |
Revision as of 12:57, 13 September 2013
Short description: | p13@LMNB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_LMNB1_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | -19bp_to_ENST00000463908_5end |
EntrezGene: | LMNB1 |
HGNC: | 6637 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.16e-15 | 12 |
keratocyte | 5.60e-07 | 2 |
migratory cranial neural crest cell | 5.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 1.73e-11 | 10 |
blastocyst | 1.73e-11 | 10 |
blastula | 1.73e-11 | 10 |
bilaminar disc | 1.73e-11 | 10 |
inner cell mass | 1.73e-11 | 10 |
cleaving embryo | 1.73e-11 | 10 |
connecting stalk | 1.73e-11 | 10 |
inner cell mass derived epiblast | 1.73e-11 | 10 |
extraembryonic mesoderm | 1.73e-11 | 10 |
liver | 5.47e-10 | 19 |
digestive gland | 5.47e-10 | 19 |
liver bud | 5.47e-10 | 19 |
hepatic diverticulum | 1.18e-08 | 22 |
liver primordium | 1.18e-08 | 22 |
digestive tract diverticulum | 2.74e-08 | 23 |
blood | 7.89e-08 | 15 |
haemolymphatic fluid | 7.89e-08 | 15 |
organism substance | 7.89e-08 | 15 |
epithelial sac | 1.22e-07 | 25 |
epithelium of foregut-midgut junction | 1.22e-07 | 25 |
anatomical boundary | 1.22e-07 | 25 |
hepatobiliary system | 1.22e-07 | 25 |
foregut-midgut junction | 1.22e-07 | 25 |
septum transversum | 1.22e-07 | 25 |
sac | 2.36e-07 | 26 |
head connective tissue | 5.60e-07 | 2 |
substantia propria of cornea | 5.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 6.06e-13 | 1 |
endocrine pancreas cancer | 6.06e-13 | 1 |
pancreatic endocrine carcinoma | 6.06e-13 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.