FFCP PHASE1:Hg19::chr5:132083164..132083173,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=645121|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=33869|TSSclassifier=S|UniProt=Q6ZMN8|association_with_transcript=27bp_to_ENST00000378731,NM_001039780,uc003kxq.1,uc011cxg.1,uc011cxh.1_5end|description=CAGE_peak_1_at_CCNI2_5end|id=chr5:132083164..132083173,+|ontology_enrichment_celltype=CL:0000791!2.03e-12!18;CL:0000789!2.03e-12!18;CL:0002420!2.03e-12!18;CL:0002419!2.03e-12!18;CL:0000790!2.03e-12!18;CL:0000542!5.66e-12!53;CL:0000051!5.66e-12!53;CL:0000838!1.97e-11!52;CL:0000084!1.42e-10!25;CL:0000827!1.42e-10!25;CL:0000624!4.90e-08!6;CL:0000625!2.23e-07!11|ontology_enrichment_celltype_v019=CL:0000624;4.30e-12;6!CL:0000084;1.11e-11;25!CL:0000791;2.94e-11;18!CL:0000789;2.94e-11;18!CL:0002419;2.94e-11;18!CL:0000623;9.64e-09;3!CL:0000542;1.54e-08;53|ontology_enrichment_celltype_v019_2=CL:0000838,3.70e-17,52;CL:0000542,9.82e-17,53;CL:0000051,9.82e-17,53;CL:0000624,5.66e-12,6;CL:0000084,1.02e-11,25;CL:0000827,1.02e-11,25;CL:0000791,2.98e-11,18;CL:0000789,2.98e-11,18;CL:0002420,2.98e-11,18;CL:0002419,2.98e-11,18;CL:0000790,2.98e-11,18;CL:0000623,4.85e-09,3;CL:0000825,4.85e-09,3|ontology_enrichment_development_v019=CL:0000790;2.94e-11;18!UBERON:0006241;3.21e-09;3!UBERON:0003057;3.21e-09;3!CL:0000051;1.54e-08;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3493;8.86e-07;2|ontology_enrichment_disease_v019_2=DOID:3493,6.01e-07,2|ontology_enrichment_uberon=UBERON:0007023!3.01e-22!115;UBERON:0001049!3.51e-13!57;UBERON:0005068!3.51e-13!57;UBERON:0006241!3.51e-13!57;UBERON:0007135!3.51e-13!57;UBERON:0002780!3.17e-10!41;UBERON:0001890!3.17e-10!41;UBERON:0006240!3.17e-10!41;UBERON:0003080!8.20e-10!42;UBERON:0002616!2.59e-09!59;UBERON:0001893!6.40e-09!34;UBERON:0005743!6.64e-09!86;UBERON:0002020!8.07e-09!34;UBERON:0003528!8.07e-09!34;UBERON:0003075!1.86e-08!86;UBERON:0007284!1.86e-08!86;UBERON:0002791!2.07e-08!33;UBERON:0003056!8.23e-08!61;UBERON:0000073!9.49e-08!94;UBERON:0001016!9.49e-08!94;UBERON:0002346!1.23e-07!90;UBERON:0001869!1.52e-07!32;UBERON:0001017!3.31e-07!82;UBERON:0000955!4.05e-07!69;UBERON:0006238!4.05e-07!69;UBERON:0000153!8.85e-07!129;UBERON:0007811!8.85e-07!129|ontology_enrichment_uberon_v019=UBERON:0005409;7.47e-13;22!UBERON:0004921;3.33e-10;33!UBERON:0002240;3.21e-09;3!UBERON:0005174;3.21e-09;3!UBERON:0001137;3.21e-09;3!UBERON:0000160;7.69e-09;17!UBERON:0002370;8.73e-07;2!UBERON:0005058;8.73e-07;2!UBERON:0009113;8.73e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0005409,3.49e-11,25;UBERON:0002240,3.99e-09,3;UBERON:0005174,3.99e-09,3;UBERON:0001137,3.99e-09,3;UBERON:0000160,6.12e-09,17;UBERON:0003408,3.65e-07,10;UBERON:0007023,4.89e-07,114;UBERON:0002370,5.14e-07,4;UBERON:0005058,5.14e-07,4;UBERON:0009113,5.14e-07,4;UBERON:0003295,5.14e-07,4;UBERON:0005562,5.14e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,2.52164238968239,1.55991119954897,2.51874500203774,0.393364276848904,0,0.619264493264304,0,0.30120591877825,0,0,0,0,0,0.200544447470142,0.868043482863407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0.382273228125229,0,1.68152568894461,0,2.16380747125216,4.32311839024081,3.08402248499264,0.83593247695339,0.977766799900771,1.89379122293893,1.94826728407911,2.33961959458865,1.17842362989935,1.32920336750173,0.270803863765016,1.92136979588513,4.81219585971549,3.12432018746985,2.48715016007264,1.44901542867526,0.444859689486181,2.1403266247177,0,1.13309342697566,2.68254345521345,1.03088233644789,0.759059076058509,0.95569624297229,1.30216690771284,0.950452044448374,0.150575119077773,0.639933055772092,0,0.473554504088034,0,2.62088766192152,1.87208137048455,3.62061009706997,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.265059536642971,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.882926198829301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829312462163088,1.72943944100354,0.88369703398466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97030760201927,2.58753089831421,1.66845947163673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0.647142602455851,0.74709290462411,0.909382714338778,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,1.54227252690289,0.541892875087706,0.501689773854853,0.254876273045038,0,0.223874754722178,0,0,0.512900250232778,0.328014645699706,0.650756789328606,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=645121 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=33869 | |||
|TSSclassifier=S | |||
|UniProt=Q6ZMN8 | |||
|association_with_transcript=27bp_to_ENST00000378731,NM_001039780,uc003kxq.1,uc011cxg.1,uc011cxh.1_5end | |||
|description=CAGE_peak_1_at_CCNI2_5end | |||
|id=chr5:132083164..132083173,+ | |||
|ontology_enrichment_celltype=CL:0000791!2.03e-12!18;CL:0000789!2.03e-12!18;CL:0002420!2.03e-12!18;CL:0002419!2.03e-12!18;CL:0000790!2.03e-12!18;CL:0000542!5.66e-12!53;CL:0000051!5.66e-12!53;CL:0000838!1.97e-11!52;CL:0000084!1.42e-10!25;CL:0000827!1.42e-10!25;CL:0000624!4.90e-08!6;CL:0000625!2.23e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000624;4.30e-12;6!CL:0000084;1.11e-11;25!CL:0000791;2.94e-11;18!CL:0000789;2.94e-11;18!CL:0002419;2.94e-11;18!CL:0000623;9.64e-09;3!CL:0000542;1.54e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.70e-17,52;CL:0000542,9.82e-17,53;CL:0000051,9.82e-17,53;CL:0000624,5.66e-12,6;CL:0000084,1.02e-11,25;CL:0000827,1.02e-11,25;CL:0000791,2.98e-11,18;CL:0000789,2.98e-11,18;CL:0002420,2.98e-11,18;CL:0002419,2.98e-11,18;CL:0000790,2.98e-11,18;CL:0000623,4.85e-09,3;CL:0000825,4.85e-09,3 | |||
|ontology_enrichment_development_v019=CL:0000790;2.94e-11;18!UBERON:0006241;3.21e-09;3!UBERON:0003057;3.21e-09;3!CL:0000051;1.54e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;8.86e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,6.01e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.01e-22!115;UBERON:0001049!3.51e-13!57;UBERON:0005068!3.51e-13!57;UBERON:0006241!3.51e-13!57;UBERON:0007135!3.51e-13!57;UBERON:0002780!3.17e-10!41;UBERON:0001890!3.17e-10!41;UBERON:0006240!3.17e-10!41;UBERON:0003080!8.20e-10!42;UBERON:0002616!2.59e-09!59;UBERON:0001893!6.40e-09!34;UBERON:0005743!6.64e-09!86;UBERON:0002020!8.07e-09!34;UBERON:0003528!8.07e-09!34;UBERON:0003075!1.86e-08!86;UBERON:0007284!1.86e-08!86;UBERON:0002791!2.07e-08!33;UBERON:0003056!8.23e-08!61;UBERON:0000073!9.49e-08!94;UBERON:0001016!9.49e-08!94;UBERON:0002346!1.23e-07!90;UBERON:0001869!1.52e-07!32;UBERON:0001017!3.31e-07!82;UBERON:0000955!4.05e-07!69;UBERON:0006238!4.05e-07!69;UBERON:0000153!8.85e-07!129;UBERON:0007811!8.85e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;7.47e-13;22!UBERON:0004921;3.33e-10;33!UBERON:0002240;3.21e-09;3!UBERON:0005174;3.21e-09;3!UBERON:0001137;3.21e-09;3!UBERON:0000160;7.69e-09;17!UBERON:0002370;8.73e-07;2!UBERON:0005058;8.73e-07;2!UBERON:0009113;8.73e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,3.49e-11,25;UBERON:0002240,3.99e-09,3;UBERON:0005174,3.99e-09,3;UBERON:0001137,3.99e-09,3;UBERON:0000160,6.12e-09,17;UBERON:0003408,3.65e-07,10;UBERON:0007023,4.89e-07,114;UBERON:0002370,5.14e-07,4;UBERON:0005058,5.14e-07,4;UBERON:0009113,5.14e-07,4;UBERON:0003295,5.14e-07,4;UBERON:0005562,5.14e-07,4 | |||
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|short_description=p1@CCNI2 | |||
}} |
Revision as of 13:07, 13 September 2013
Short description: | p1@CCNI2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CCNI2_5end |
Coexpression cluster: | NA |
Association with transcript: | 27bp_to_ENST00000378731, NM_001039780, uc003kxq.1, uc011cxg.1, uc011cxh.1_5end |
EntrezGene: | CCNI2 |
HGNC: | 33869 |
UniProt: | Q6ZMN8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.70e-17 | 52 |
lymphocyte | 9.82e-17 | 53 |
common lymphoid progenitor | 9.82e-17 | 53 |
CD4-positive, alpha-beta T cell | 5.66e-12 | 6 |
T cell | 1.02e-11 | 25 |
pro-T cell | 1.02e-11 | 25 |
mature alpha-beta T cell | 2.98e-11 | 18 |
alpha-beta T cell | 2.98e-11 | 18 |
immature T cell | 2.98e-11 | 18 |
mature T cell | 2.98e-11 | 18 |
immature alpha-beta T cell | 2.98e-11 | 18 |
natural killer cell | 4.85e-09 | 3 |
pro-NK cell | 4.85e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 3.49e-11 | 25 |
spinal cord | 3.99e-09 | 3 |
dorsal region element | 3.99e-09 | 3 |
dorsum | 3.99e-09 | 3 |
intestine | 6.12e-09 | 17 |
gland of gut | 3.65e-07 | 10 |
adult organism | 4.89e-07 | 114 |
thymus | 5.14e-07 | 4 |
hemolymphoid system gland | 5.14e-07 | 4 |
thymic region | 5.14e-07 | 4 |
pharyngeal gland | 5.14e-07 | 4 |
thymus primordium | 5.14e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 6.01e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.