FFCP PHASE1:Hg19::chr5:73109190..73109200,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64283|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=|TSSclassifier=N|UniProt=B5MDA3|association_with_transcript=-142bp_to_ENST00000296799,NM_001244364,uc011csr.1_5end|description=CAGE_peak_12_at_RGNEF_5end|id=chr5:73109190..73109200,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000511;4.27e-34;1!CL:0002625;4.27e-34;1!CL:0000216;4.27e-34;1!CL:0000182;2.05e-25;12!CL:0000154;8.25e-07;6|ontology_enrichment_celltype_v019_2=CL:0000511,3.61e-34,1;CL:0002625,3.61e-34,1;CL:0000216,3.61e-34,1;CL:0000182,2.14e-25,12;CL:0000154,8.02e-07,6|ontology_enrichment_development_v019=UBERON:0004161;1.22e-27;11!UBERON:0009497;1.56e-23;13!UBERON:0001041;3.74e-18;30!UBERON:0003104;3.90e-10;31|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:7;9.34e-09;39|ontology_enrichment_disease_v019_2=DOID:7,2.30e-08,39|ontology_enrichment_uberon=UBERON:0000466!2.90e-09!126;UBERON:0002118!8.54e-08!5;UBERON:0004532!8.54e-08!5;UBERON:0005177!4.39e-07!107;UBERON:0002417!5.39e-07!61;UBERON:0000916!5.39e-07!61|ontology_enrichment_uberon_v019=UBERON:0001136;4.27e-34;1!UBERON:0001343;4.27e-34;1!UBERON:0004910;4.27e-34;1!UBERON:0004813;4.27e-34;1!UBERON:0004909;8.34e-18;2!UBERON:0002107;2.21e-16;19!UBERON:0006925;2.21e-16;19!UBERON:0002423;1.20e-12;25!UBERON:0002114;2.45e-12;2!UBERON:0002365;1.32e-09;31!UBERON:0002330;1.32e-09;31!UBERON:0005904;1.38e-09;4!UBERON:0002368;4.49e-09;33!UBERON:0002108;6.33e-08;4!UBERON:0000949;3.65e-07;43|ontology_enrichment_uberon_v019_2=UBERON:0001136,3.61e-34,1;UBERON:0001343,3.61e-34,1;UBERON:0004910,3.61e-34,1;UBERON:0005154,3.61e-34,1;UBERON:0005295,3.61e-34,1;UBERON:0004813,3.61e-34,1;UBERON:0005297,3.61e-34,1;UBERON:0005294,3.61e-34,1;UBERON:0010141,3.61e-34,1;UBERON:0005891,3.61e-34,1;UBERON:0004909,7.67e-18,2;UBERON:0002107,2.27e-16,19;UBERON:0006925,2.27e-16,19;UBERON:0008836,2.27e-16,19;UBERON:0008835,2.99e-14,22;UBERON:0003894,2.99e-14,22;UBERON:0009854,1.15e-13,23;UBERON:0007499,1.23e-12,25;UBERON:0009497,1.23e-12,25;UBERON:0000015,1.23e-12,25;UBERON:0002423,1.23e-12,25;UBERON:0006235,1.23e-12,25;UBERON:0004161,1.23e-12,25;UBERON:0002114,3.24e-12,2;UBERON:0009856,3.51e-12,26;UBERON:0002365,2.44e-10,31;UBERON:0002330,2.44e-10,31;UBERON:0005904,1.32e-09,4;UBERON:0002368,3.06e-09,35;UBERON:0002108,7.49e-08,4;UBERON:0004921,2.29e-07,118;UBERON:0000949,2.44e-07,45;UBERON:0005911,5.27e-07,82|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0.0821271560138091,0,0,0.120859449591622,0,0,0,0,0,0,0.385076685522074,0,0,0.527758144464379,0,0,0,0,0,0.501689773854853,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755798243562828,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0.569219092059585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41809728153003,1.40106959247983,1.75249214020881,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88195521672762,0,0.213574825135389,0.471612915298998,0.828478110694391,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318593534327405,0,0,0,0,0,0,0,0,0.545545977607678,0.107410557042488,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0.381382095467167,0,0,0,0.20170506870352,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243835849964539,0,0,0,0,0,0,0,0,0,0,0,0.437119121007915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p12@RGNEF}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=64283 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=N | |||
|UniProt=B5MDA3 | |||
|association_with_transcript=-142bp_to_ENST00000296799,NM_001244364,uc011csr.1_5end | |||
|description=CAGE_peak_12_at_RGNEF_5end | |||
|id=chr5:73109190..73109200,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000511;4.27e-34;1!CL:0002625;4.27e-34;1!CL:0000216;4.27e-34;1!CL:0000182;2.05e-25;12!CL:0000154;8.25e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000511,3.61e-34,1;CL:0002625,3.61e-34,1;CL:0000216,3.61e-34,1;CL:0000182,2.14e-25,12;CL:0000154,8.02e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.22e-27;11!UBERON:0009497;1.56e-23;13!UBERON:0001041;3.74e-18;30!UBERON:0003104;3.90e-10;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:7;9.34e-09;39 | |||
|ontology_enrichment_disease_v019_2=DOID:7,2.30e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0000466!2.90e-09!126;UBERON:0002118!8.54e-08!5;UBERON:0004532!8.54e-08!5;UBERON:0005177!4.39e-07!107;UBERON:0002417!5.39e-07!61;UBERON:0000916!5.39e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001136;4.27e-34;1!UBERON:0001343;4.27e-34;1!UBERON:0004910;4.27e-34;1!UBERON:0004813;4.27e-34;1!UBERON:0004909;8.34e-18;2!UBERON:0002107;2.21e-16;19!UBERON:0006925;2.21e-16;19!UBERON:0002423;1.20e-12;25!UBERON:0002114;2.45e-12;2!UBERON:0002365;1.32e-09;31!UBERON:0002330;1.32e-09;31!UBERON:0005904;1.38e-09;4!UBERON:0002368;4.49e-09;33!UBERON:0002108;6.33e-08;4!UBERON:0000949;3.65e-07;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,3.61e-34,1;UBERON:0001343,3.61e-34,1;UBERON:0004910,3.61e-34,1;UBERON:0005154,3.61e-34,1;UBERON:0005295,3.61e-34,1;UBERON:0004813,3.61e-34,1;UBERON:0005297,3.61e-34,1;UBERON:0005294,3.61e-34,1;UBERON:0010141,3.61e-34,1;UBERON:0005891,3.61e-34,1;UBERON:0004909,7.67e-18,2;UBERON:0002107,2.27e-16,19;UBERON:0006925,2.27e-16,19;UBERON:0008836,2.27e-16,19;UBERON:0008835,2.99e-14,22;UBERON:0003894,2.99e-14,22;UBERON:0009854,1.15e-13,23;UBERON:0007499,1.23e-12,25;UBERON:0009497,1.23e-12,25;UBERON:0000015,1.23e-12,25;UBERON:0002423,1.23e-12,25;UBERON:0006235,1.23e-12,25;UBERON:0004161,1.23e-12,25;UBERON:0002114,3.24e-12,2;UBERON:0009856,3.51e-12,26;UBERON:0002365,2.44e-10,31;UBERON:0002330,2.44e-10,31;UBERON:0005904,1.32e-09,4;UBERON:0002368,3.06e-09,35;UBERON:0002108,7.49e-08,4;UBERON:0004921,2.29e-07,118;UBERON:0000949,2.44e-07,45;UBERON:0005911,5.27e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0.0821271560138091,0,0,0.120859449591622,0,0,0,0,0,0,0.385076685522074,0,0,0.527758144464379,0,0,0,0,0,0.501689773854853,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755798243562828,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0.569219092059585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41809728153003,1.40106959247983,1.75249214020881,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88195521672762,0,0.213574825135389,0.471612915298998,0.828478110694391,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318593534327405,0,0,0,0,0,0,0,0,0.545545977607678,0.107410557042488,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0.381382095467167,0,0,0,0.20170506870352,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243835849964539,0,0,0,0,0,0,0,0,0,0,0,0.437119121007915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p12@RGNEF | |||
}} |
Revision as of 16:22, 13 September 2013
Short description: | p12@RGNEF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_RGNEF_5end |
Coexpression cluster: | NA |
Association with transcript: | -142bp_to_ENST00000296799, NM_001244364, uc011csr.1_5end |
EntrezGene: | RGNEF |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 3.61e-34 | 1 |
seminiferous tubule epithelial cell | 3.61e-34 | 1 |
Sertoli cell | 3.61e-34 | 1 |
hepatocyte | 2.14e-25 | 12 |
protein secreting cell | 8.02e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 3.61e-34 | 1 |
seminiferous tubule of testis | 3.61e-34 | 1 |
epithelium of male gonad | 3.61e-34 | 1 |
epithelial cord | 3.61e-34 | 1 |
sex cord | 3.61e-34 | 1 |
seminiferous tubule epithelium | 3.61e-34 | 1 |
testis sex cord | 3.61e-34 | 1 |
genital ridge | 3.61e-34 | 1 |
primitive sex cord of indifferent gonad | 3.61e-34 | 1 |
coelomic epithelium | 3.61e-34 | 1 |
epithelium of gonad | 7.67e-18 | 2 |
liver | 2.27e-16 | 19 |
digestive gland | 2.27e-16 | 19 |
liver bud | 2.27e-16 | 19 |
hepatic diverticulum | 2.99e-14 | 22 |
liver primordium | 2.99e-14 | 22 |
digestive tract diverticulum | 1.15e-13 | 23 |
epithelial sac | 1.23e-12 | 25 |
epithelium of foregut-midgut junction | 1.23e-12 | 25 |
anatomical boundary | 1.23e-12 | 25 |
hepatobiliary system | 1.23e-12 | 25 |
foregut-midgut junction | 1.23e-12 | 25 |
septum transversum | 1.23e-12 | 25 |
duodenum | 3.24e-12 | 2 |
sac | 3.51e-12 | 26 |
exocrine gland | 2.44e-10 | 31 |
exocrine system | 2.44e-10 | 31 |
duct of male reproductive system | 1.32e-09 | 4 |
endocrine gland | 3.06e-09 | 35 |
small intestine | 7.49e-08 | 4 |
subdivision of digestive tract | 2.29e-07 | 118 |
endocrine system | 2.44e-07 | 45 |
endo-epithelium | 5.27e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 2.30e-08 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.