FFCP PHASE1:Mm9::chr19:55967163..55967174,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=141|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr19:55967163..55967174,+|id=chr19:55967163..55967174,+|ontology_enrichment_celltype=CL:0002613!2.33e-09!3;CL:0000120!9.79e-09!3;CL:0000117!3.87e-08!23;CL:0000337!3.87e-08!23|ontology_enrichment_celltype_v019_2=CL:0002613,3.67e-34,3;CL:0000117,2.84e-17,23;CL:0000337,2.84e-17,23;CL:0002610,2.04e-15,3;CL:0000540,4.45e-12,33;CL:0000047,4.45e-12,33;CL:0000031,4.45e-12,33;CL:0000404,4.45e-12,33;CL:0000393,3.13e-10,39;CL:0000211,3.13e-10,39;CL:0002319,2.78e-09,43;CL:0000221,4.52e-09,44;CL:0000133,4.52e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0000369,7.72e-21,5;UBERON:0002435,7.72e-21,5;UBERON:0000204,7.72e-21,5;UBERON:0010082,7.72e-21,5;UBERON:0004684,2.04e-15,3;UBERON:0002275,2.04e-15,3;UBERON:0002420,2.64e-13,8;UBERON:0007245,2.64e-13,8;UBERON:0010009,2.64e-13,8;UBERON:0010011,2.64e-13,8;UBERON:0000454,2.64e-13,8;UBERON:0002259,5.53e-12,1;UBERON:0002314,5.53e-12,1;UBERON:0004061,5.53e-12,1;UBERON:0006777,5.53e-12,1;UBERON:0005882,5.53e-12,1;UBERON:0000073,5.55e-10,54;UBERON:0001017,1.46e-09,73;UBERON:0001016,2.65e-09,75;UBERON:0004121,2.60e-07,95;UBERON:0000924,2.60e-07,95;UBERON:0006601,2.60e-07,95;UBERON:0003080,3.97e-07,40|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0.809265843438391,1.05798195854407,0.633831403506179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65993539510744,1.38245879930619,6.19865552331911,8.23388792421687,7.8137005583514,0.279182999001381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19832511523858,0,0,0,0,2.0778804455956,0.973447578406546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0.222246727801615,0,0.320919209591815,0,0.50695859978048,0.188626341386076,0.0936415074698824,0.0640251524048693,0.17230640686684,0,0.115884325944855,0.192909220463705,0,0,0.342869252385415,0.177475806159338,0,0.145346416632329,0.376437521661322,0.169229215783353,0.182927972872773,0,0.271608227691724,0,0.118635018124174,0.29551344712669,0,0,0,0.749431733813838,0.233931608445408,0.214871054048298,0,0,0|short_description=p@chr19:55967163..55967174,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=141 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr19:55967163..55967174,+ | |||
|id=chr19:55967163..55967174,+ | |||
|ontology_enrichment_celltype=CL:0002613!2.33e-09!3;CL:0000120!9.79e-09!3;CL:0000117!3.87e-08!23;CL:0000337!3.87e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002613,3.67e-34,3;CL:0000117,2.84e-17,23;CL:0000337,2.84e-17,23;CL:0002610,2.04e-15,3;CL:0000540,4.45e-12,33;CL:0000047,4.45e-12,33;CL:0000031,4.45e-12,33;CL:0000404,4.45e-12,33;CL:0000393,3.13e-10,39;CL:0000211,3.13e-10,39;CL:0002319,2.78e-09,43;CL:0000221,4.52e-09,44;CL:0000133,4.52e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,7.72e-21,5;UBERON:0002435,7.72e-21,5;UBERON:0000204,7.72e-21,5;UBERON:0010082,7.72e-21,5;UBERON:0004684,2.04e-15,3;UBERON:0002275,2.04e-15,3;UBERON:0002420,2.64e-13,8;UBERON:0007245,2.64e-13,8;UBERON:0010009,2.64e-13,8;UBERON:0010011,2.64e-13,8;UBERON:0000454,2.64e-13,8;UBERON:0002259,5.53e-12,1;UBERON:0002314,5.53e-12,1;UBERON:0004061,5.53e-12,1;UBERON:0006777,5.53e-12,1;UBERON:0005882,5.53e-12,1;UBERON:0000073,5.55e-10,54;UBERON:0001017,1.46e-09,73;UBERON:0001016,2.65e-09,75;UBERON:0004121,2.60e-07,95;UBERON:0000924,2.60e-07,95;UBERON:0006601,2.60e-07,95;UBERON:0003080,3.97e-07,40 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0.809265843438391,1.05798195854407,0.633831403506179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65993539510744,1.38245879930619,6.19865552331911,8.23388792421687,7.8137005583514,0.279182999001381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19832511523858,0,0,0,0,2.0778804455956,0.973447578406546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0.222246727801615,0,0.320919209591815,0,0.50695859978048,0.188626341386076,0.0936415074698824,0.0640251524048693,0.17230640686684,0,0.115884325944855,0.192909220463705,0,0,0.342869252385415,0.177475806159338,0,0.145346416632329,0.376437521661322,0.169229215783353,0.182927972872773,0,0.271608227691724,0,0.118635018124174,0.29551344712669,0,0,0,0.749431733813838,0.233931608445408,0.214871054048298,0,0,0 | |||
|short_description=p@chr19:55967163..55967174,+ | |||
}} |
Revision as of 18:07, 13 September 2013
Short description: | p@chr19:55967163..55967174, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:55967163..55967174, + |
Coexpression cluster: | MCL_coexpression_mm9:141 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
striatum neuron | 3.67e-34 | 3 |
CNS neuron (sensu Vertebrata) | 2.84e-17 | 23 |
neuroblast (sensu Vertebrata) | 2.84e-17 | 23 |
raphe nuclei neuron | 2.04e-15 | 3 |
neuron | 4.45e-12 | 33 |
neuronal stem cell | 4.45e-12 | 33 |
neuroblast | 4.45e-12 | 33 |
electrically signaling cell | 4.45e-12 | 33 |
electrically responsive cell | 3.13e-10 | 39 |
electrically active cell | 3.13e-10 | 39 |
neural cell | 2.78e-09 | 43 |
ectodermal cell | 4.52e-09 | 44 |
neurectodermal cell | 4.52e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 7.72e-21 | 5 |
striatum | 7.72e-21 | 5 |
ventral part of telencephalon | 7.72e-21 | 5 |
future corpus striatum | 7.72e-21 | 5 |
raphe nuclei | 2.04e-15 | 3 |
reticular formation | 2.04e-15 | 3 |
basal ganglion | 2.64e-13 | 8 |
nuclear complex of neuraxis | 2.64e-13 | 8 |
aggregate regional part of brain | 2.64e-13 | 8 |
collection of basal ganglia | 2.64e-13 | 8 |
cerebral subcortex | 2.64e-13 | 8 |
corpora quadrigemina | 5.53e-12 | 1 |
midbrain tectum | 5.53e-12 | 1 |
neural tube mantle layer | 5.53e-12 | 1 |
tectal plate | 5.53e-12 | 1 |
neural tube alar plate | 5.53e-12 | 1 |
regional part of nervous system | 5.55e-10 | 54 |
central nervous system | 1.46e-09 | 73 |
nervous system | 2.65e-09 | 75 |
ectoderm-derived structure | 2.60e-07 | 95 |
ectoderm | 2.60e-07 | 95 |
presumptive ectoderm | 2.60e-07 | 95 |
anterior neural tube | 3.97e-07 | 40 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.