FFCP PHASE1:Mm9::chr1:133904217..133904250,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=13714|HGNC=|MCL_coexpression_id=3227|UniProt=P41158|association_with_transcript=33bp_to_ENSMUST00000086556_5end|description=CAGE_peak_5_at_Elk4_5end|id=chr1:133904217..133904250,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001004!2.27e-13!42;UBERON:0000065!5.00e-13!41;UBERON:0005911!1.65e-10!69;UBERON:0004177!8.73e-10!29;UBERON:0000072!9.45e-10!27;UBERON:0003408!1.51e-09!24;UBERON:0006562!2.00e-09!24;UBERON:0001557!2.00e-09!24;UBERON:0001042!2.00e-09!24;UBERON:0008814!2.00e-09!24;UBERON:0009145!2.00e-09!24;UBERON:0004119!2.40e-09!130;UBERON:0000925!2.40e-09!130;UBERON:0006595!2.40e-09!130;UBERON:0002370!3.14e-09!23;UBERON:0000974!3.14e-09!23;UBERON:0004807!3.14e-09!23;UBERON:0005058!3.14e-09!23;UBERON:0003351!3.14e-09!23;UBERON:0009113!3.14e-09!23;UBERON:0003295!3.14e-09!23;UBERON:0009722!3.14e-09!23;UBERON:0005562!3.14e-09!23;UBERON:0007690!3.14e-09!23;UBERON:0004921!3.90e-09!126;UBERON:0004185!3.90e-09!126;UBERON:0001007!4.05e-09!128;UBERON:0001555!4.05e-09!128;UBERON:0007026!4.05e-09!128;UBERON:0005057!5.16e-08!51;UBERON:0001041!7.46e-08!92;UBERON:0000077!7.80e-08!97;UBERON:0003929!3.06e-07!55;UBERON:0000490!6.94e-07!66|ontology_enrichment_uberon_v019_2=UBERON:0001004,1.58e-13,42;UBERON:0000065,3.50e-13,41;UBERON:0005911,1.88e-10,69;UBERON:0004119,1.90e-10,118;UBERON:0000925,1.90e-10,118;UBERON:0006595,1.90e-10,118;UBERON:0004921,2.96e-10,114;UBERON:0001007,3.23e-10,116;UBERON:0001555,3.23e-10,116;UBERON:0007026,3.23e-10,116;UBERON:0004177,6.29e-10,29;UBERON:0005057,6.29e-10,29;UBERON:0000072,6.76e-10,27;UBERON:0003408,1.07e-09,24;UBERON:0000077,1.37e-09,35;UBERON:0006562,1.42e-09,24;UBERON:0001557,1.42e-09,24;UBERON:0001042,1.42e-09,24;UBERON:0008814,1.42e-09,24;UBERON:0009145,1.42e-09,24;UBERON:0002370,2.23e-09,23;UBERON:0000974,2.23e-09,23;UBERON:0004807,2.23e-09,23;UBERON:0005058,2.23e-09,23;UBERON:0003351,2.23e-09,23;UBERON:0009113,2.23e-09,23;UBERON:0003295,2.23e-09,23;UBERON:0009722,2.23e-09,23;UBERON:0005562,2.23e-09,23;UBERON:0007690,2.23e-09,23;UBERON:0001041,2.49e-09,80;UBERON:0003929,3.51e-07,55;UBERON:0000490,8.69e-07,66|phase1_expression=2.5623815536767,4.88565570695105,8.64498554840118,13.6108895088074,11.0197060588196,2.51818907867835,1.16806320297763,3.48632973292256,32.2406173727317,25.9811624217413,6.67750076079469,3.27065851880879,11.9840510951844,6.20684857174882,3.33109761815663,3.03712901084739,2.09868563438444,3.47008381894061,6.44437837946972,4.66828616977833,2.46625541438102,1.88652807281682,0.522399578277871,2.55987876469451,1.83527424853736,5.16808767703518,2.58457197695445,3.23206849028834,2.66032787238923,3.2763916868791,0.886922042621219,1.27006134691926,0.61506478758457,0,2.3108129580102,0.831173226792462,1.02084678131185,7.53356935326434,3.906676722619,4.18818995179039,7.64700934440319,4.78131839470912,8.25367600152961,0.755380907853464,1.21652317463417,1.65192076945513,1.56478268869608,0.218025156380447,0,0.58328969722285,0.979904951377538,0,7.71799987865587,21.035502118329,18.4851589528355,4.3734104126111,2.29226751951005,2.57836046138721,1.01158230429799,1.5869729378161,0.633831403506179,1.69422266034566,0,0.449949858640699,0,0.7104801149461,0.898800331555214,0.384218305321555,1.03689612308478,0.540023753326763,1.89292465216244,0.571301968807607,1.76694832761291,0.857435594504678,1.0543001812006,1.83843757322004,0,0.766124028511126,1.38245879930619,0.923204014111357,1.28082701043374,1.04182674111352,1.67509799400829,0,1.22238598221448,2.35702868378934,1.56608848879013,1.3047961207771,2.57469057332826,1.5870027622425,6.66688324013859,0.860423876981386,18.3592260101093,2.15881276655127,5.84798775702902,6.72040330646003,1.68533304158102,1.36344258062446,1.03914401841148,2.12003744706204,0.845060518660083,6.41632387071589,2.54805239706646,0,2.16491041011214,4.30711771307668,4.04419556011827,2.8545969929765,8.02707439306232,2.07818994690755,2.08182392119363,2.74018930480927,0.691846491768175,1.50722640552623,2.4693628498498,1.50799909595611,4.20231445148436,8.53136205827479,6.19227386364912,1.7794353494215,4.19598885074748,6.78825354389311,1.86391761218122,0,0.83778682725382,3.32094171771169,9.94465533399138,3.59941638596045,6.73472203487243,1.04853447583376,3.20250421973039,0.753926112677186,2.78118912307642,2.55715457330331,0.83115217823824,1.78465389374533,1.93494791315601,3.6078021476927,1.26361379216837,2.52530227063769,1.04096354370163,0.689706313300419,1.26043490863744,1.05493372485001,1.63287597963187,1.0249097622788,0.843315521037559,3.88055056108524,0.862271971731369,1.70195472151037,1.58356011747554,0.876782929710299,1.66828349535359,1.74126083261083,2.88094990971121,0.995171334092466,0.702213187313235,2.31613116403244,2.55747149456033,1.03562886267751,2.57978665979206,1.80062061461015,1.89395788468168,1.77087808572663,1.3884040159864,1.62773761325285,1.87791380979733,2.45207218971056,2.13927804887525,3.94001913789829,5.999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| ||
|EntrezGene=13714 | |||
|HGNC= | |||
|MCL_coexpression_id=3227 | |||
|UniProt=P41158 | |||
|association_with_transcript=33bp_to_ENSMUST00000086556_5end | |||
|description=CAGE_peak_5_at_Elk4_5end | |||
|id=chr1:133904217..133904250,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!2.27e-13!42;UBERON:0000065!5.00e-13!41;UBERON:0005911!1.65e-10!69;UBERON:0004177!8.73e-10!29;UBERON:0000072!9.45e-10!27;UBERON:0003408!1.51e-09!24;UBERON:0006562!2.00e-09!24;UBERON:0001557!2.00e-09!24;UBERON:0001042!2.00e-09!24;UBERON:0008814!2.00e-09!24;UBERON:0009145!2.00e-09!24;UBERON:0004119!2.40e-09!130;UBERON:0000925!2.40e-09!130;UBERON:0006595!2.40e-09!130;UBERON:0002370!3.14e-09!23;UBERON:0000974!3.14e-09!23;UBERON:0004807!3.14e-09!23;UBERON:0005058!3.14e-09!23;UBERON:0003351!3.14e-09!23;UBERON:0009113!3.14e-09!23;UBERON:0003295!3.14e-09!23;UBERON:0009722!3.14e-09!23;UBERON:0005562!3.14e-09!23;UBERON:0007690!3.14e-09!23;UBERON:0004921!3.90e-09!126;UBERON:0004185!3.90e-09!126;UBERON:0001007!4.05e-09!128;UBERON:0001555!4.05e-09!128;UBERON:0007026!4.05e-09!128;UBERON:0005057!5.16e-08!51;UBERON:0001041!7.46e-08!92;UBERON:0000077!7.80e-08!97;UBERON:0003929!3.06e-07!55;UBERON:0000490!6.94e-07!66 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,1.58e-13,42;UBERON:0000065,3.50e-13,41;UBERON:0005911,1.88e-10,69;UBERON:0004119,1.90e-10,118;UBERON:0000925,1.90e-10,118;UBERON:0006595,1.90e-10,118;UBERON:0004921,2.96e-10,114;UBERON:0001007,3.23e-10,116;UBERON:0001555,3.23e-10,116;UBERON:0007026,3.23e-10,116;UBERON:0004177,6.29e-10,29;UBERON:0005057,6.29e-10,29;UBERON:0000072,6.76e-10,27;UBERON:0003408,1.07e-09,24;UBERON:0000077,1.37e-09,35;UBERON:0006562,1.42e-09,24;UBERON:0001557,1.42e-09,24;UBERON:0001042,1.42e-09,24;UBERON:0008814,1.42e-09,24;UBERON:0009145,1.42e-09,24;UBERON:0002370,2.23e-09,23;UBERON:0000974,2.23e-09,23;UBERON:0004807,2.23e-09,23;UBERON:0005058,2.23e-09,23;UBERON:0003351,2.23e-09,23;UBERON:0009113,2.23e-09,23;UBERON:0003295,2.23e-09,23;UBERON:0009722,2.23e-09,23;UBERON:0005562,2.23e-09,23;UBERON:0007690,2.23e-09,23;UBERON:0001041,2.49e-09,80;UBERON:0003929,3.51e-07,55;UBERON:0000490,8.69e-07,66 | |||
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| |||
|short_description=p5@Elk4 | |||
}} |
Revision as of 18:49, 13 September 2013
Short description: | p5@Elk4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Elk4_5end |
Coexpression cluster: | MCL_coexpression_mm9:3227 |
Association with transcript: | 33bp_to_ENSMUST00000086556_5end |
EntrezGene: | Elk4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory system | 1.58e-13 | 42 |
respiratory tract | 3.50e-13 | 41 |
endo-epithelium | 1.88e-10 | 69 |
endoderm-derived structure | 1.90e-10 | 118 |
endoderm | 1.90e-10 | 118 |
presumptive endoderm | 1.90e-10 | 118 |
subdivision of digestive tract | 2.96e-10 | 114 |
digestive system | 3.23e-10 | 116 |
digestive tract | 3.23e-10 | 116 |
primitive gut | 3.23e-10 | 116 |
hemopoietic organ | 6.29e-10 | 29 |
immune organ | 6.29e-10 | 29 |
segment of respiratory tract | 6.76e-10 | 27 |
gland of gut | 1.07e-09 | 24 |
mixed endoderm/mesoderm-derived structure | 1.37e-09 | 35 |
pharynx | 1.42e-09 | 24 |
upper respiratory tract | 1.42e-09 | 24 |
chordate pharynx | 1.42e-09 | 24 |
pharyngeal arch system | 1.42e-09 | 24 |
pharyngeal region of foregut | 1.42e-09 | 24 |
thymus | 2.23e-09 | 23 |
neck | 2.23e-09 | 23 |
respiratory system epithelium | 2.23e-09 | 23 |
hemolymphoid system gland | 2.23e-09 | 23 |
pharyngeal epithelium | 2.23e-09 | 23 |
thymic region | 2.23e-09 | 23 |
pharyngeal gland | 2.23e-09 | 23 |
entire pharyngeal arch endoderm | 2.23e-09 | 23 |
thymus primordium | 2.23e-09 | 23 |
early pharyngeal endoderm | 2.23e-09 | 23 |
foregut | 2.49e-09 | 80 |
gut epithelium | 3.51e-07 | 55 |
unilaminar epithelium | 8.69e-07 | 66 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.