FFCP PHASE1:Hg19::chr6:34212929..34212949,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:34212929..34212949,+|id=chr6:34212929..34212949,+|ontology_enrichment_celltype=CL:0000548!2.18e-18!679;CL:0000004!2.18e-18!679;CL:0000255!2.18e-18!679;CL:0000012!4.04e-18!682;CL:0002321!3.29e-15!248;CL:0000220!9.46e-15!246;CL:0000003!5.92e-12!722;CL:0000144!3.99e-11!625;CL:0000222!4.39e-11!119;CL:0000066!5.28e-10!254;CL:0000393!1.92e-09!60;CL:0000211!1.92e-09!60;CL:0000183!6.35e-09!59;CL:0000055!3.62e-08!180;CL:0000187!3.65e-08!54;CL:0000680!9.39e-08!57;CL:0000056!9.39e-08!57;CL:0000355!9.39e-08!57;CL:0002371!9.75e-08!591|ontology_enrichment_celltype_v019=CL:0002681;2.45e-08;12!CL:0002584;2.45e-08;12!CL:1000746;7.96e-08;7!CL:1000612;7.96e-08;7!CL:0002188;1.30e-07;5|ontology_enrichment_celltype_v019_2=CL:0002321,2.32e-10,250;CL:0000222,1.26e-09,121;CL:0000393,1.73e-09,61;CL:0000211,1.73e-09,61;CL:0002681,3.10e-08,12;CL:0002584,3.10e-08,12;CL:0000680,8.31e-08,58;CL:0000056,8.31e-08,58;CL:0000355,8.31e-08,58;CL:0002188,9.53e-08,5;CL:1000746,1.03e-07,7;CL:1000612,1.03e-07,7;CL:0000187,1.91e-07,55|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:14566!4.68e-08!239;DOID:162!3.79e-07!235|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005256!1.77e-09!143;UBERON:0004290!3.74e-08!70;UBERON:0000490!1.08e-07!138;UBERON:0000914!1.29e-07!83;UBERON:0002329!1.29e-07!83;UBERON:0003077!1.29e-07!83;UBERON:0003059!1.29e-07!83;UBERON:0007282!1.29e-07!83;UBERON:0009618!1.29e-07!83;UBERON:0007285!1.29e-07!83;UBERON:0003104!4.63e-07!238;UBERON:0009142!4.63e-07!238;UBERON:0003914!9.84e-07!118;UBERON:0002049!9.92e-07!79;UBERON:0007798!9.92e-07!79|ontology_enrichment_uberon_v019=UBERON:0001225;2.45e-08;12!UBERON:0008987;2.45e-08;12!UBERON:0000353;3.32e-08;15!UBERON:0000074;7.96e-08;7!UBERON:0001229;7.96e-08;7|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.92e-13,78;UBERON:0002329,2.00e-09,71;UBERON:0003059,2.00e-09,71;UBERON:0007282,2.00e-09,71;UBERON:0004290,2.00e-09,71;UBERON:0009618,2.00e-09,71;UBERON:0005256,2.24e-09,122;UBERON:0003077,3.26e-09,72;UBERON:0007285,3.26e-09,72;UBERON:0007524,5.24e-09,73;UBERON:0001225,3.10e-08,12;UBERON:0008987,3.10e-08,12;UBERON:0000353,3.72e-08,15;UBERON:0010532,1.03e-07,7;UBERON:0000074,1.03e-07,7;UBERON:0001229,1.03e-07,7;UBERON:0001230,1.03e-07,7;UBERON:0003220,1.03e-07,7;UBERON:0005749,1.03e-07,7;UBERON:0004199,1.03e-07,7;UBERON:0004209,1.03e-07,7;UBERON:0004198,1.03e-07,7;UBERON:0000490,1.69e-07,148;UBERON:0000486,3.04e-07,83;UBERON:0003104,4.01e-07,160;UBERON:0009142,4.01e-07,160;UBERON:0001134,5.14e-07,62;UBERON:0002036,5.14e-07,62;UBERON:0003082,5.14e-07,62|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0.491467873003018,6.97801167972428,0,0.527533956456907,0.123766352960047,0.662794751455832,1.34465029290355,1.80808358407193,0.730310090387373,0.975865597581014,0.369363174230364,1.63200552995402,0.313454721478088,0,1.23186982565596,0.502170558379211,0.534893840235659,0.492603536699674,0.314843125254717,0,0.383829398097213,0,0.919421224478927,0.6024118375565,3.32778609150109,0.154934401160603,0,0.587200878669695,0,0,0,0.223915474239924,0,0,0.436194716338694,0.755751887377619,0,0.697287110717054,0.411167888021826,0.309706370895104,0,0.256160706529101,0,0,0,0,0.376484679085209,1.09162460023138,0.224723484445085,0.306083892370903,0.320929027076094,0,0.659702600373432,0.797854630486527,0.426224750532694,1.16083695451434,0.56738522469114,0.622822248995575,0.251248665256743,1.5644487552606,0,0,0,0.316462387440884,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0.196709770113833,0.393010762749165,0,0.334372990781356,0,0.473447805734733,0,0,0,0,0,0.128091319725675,0,0.493313713811028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.12786256184353,0,0,0,0,0,0.567208902984407,0.665188192387692,1.22968699970376,0,0,0.370784442784429,0,0.174129737299267,0,0,1.14398982156026,0,0.39752481473341,1.72046919021225,0,0,0.838998872419812,2.47606237746061,0.835979866147242,0.775250277507987,1.06729878806013,0,0.402829317109147,0.760272105718513,0,0.735326160691737,0,0.625098097988558,0.898117490504679,1.23872628531654,0,0.949265659568129,1.28241220751285,0,0,0,0.496971951695318,0.12663051166458,0,0,2.83734705758686,0,0,0.98667019366864,0,0.67355336034844,0.163461903113459,0,0,1.17160715916898,0.312160076830321,0.570471821544449,4.03511437489863,2.81842796745036,2.26622122115384,2.94946694074722,0.408308342509787,3.93069815397658,1.34323515528495,0,1.23633464639278,0.910161361938026,1.43723628363248,0.673344455816265,3.87867411603089,0.277064115484183,0,1.5324389789951,0.45071417671979,0.113432183160021,0.179389635688862,0.427114777637135,0.211931901159562,0,0.206105058476878,0,0,0,0.0974370051611986,0,0,0.161646056818812,0,0.302256294682921,0,0,0.272746120590835,0.286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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:34212929..34212949,+ | |||
|id=chr6:34212929..34212949,+ | |||
|ontology_enrichment_celltype=CL:0000548!2.18e-18!679;CL:0000004!2.18e-18!679;CL:0000255!2.18e-18!679;CL:0000012!4.04e-18!682;CL:0002321!3.29e-15!248;CL:0000220!9.46e-15!246;CL:0000003!5.92e-12!722;CL:0000144!3.99e-11!625;CL:0000222!4.39e-11!119;CL:0000066!5.28e-10!254;CL:0000393!1.92e-09!60;CL:0000211!1.92e-09!60;CL:0000183!6.35e-09!59;CL:0000055!3.62e-08!180;CL:0000187!3.65e-08!54;CL:0000680!9.39e-08!57;CL:0000056!9.39e-08!57;CL:0000355!9.39e-08!57;CL:0002371!9.75e-08!591 | |||
|ontology_enrichment_celltype_v019=CL:0002681;2.45e-08;12!CL:0002584;2.45e-08;12!CL:1000746;7.96e-08;7!CL:1000612;7.96e-08;7!CL:0002188;1.30e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.32e-10,250;CL:0000222,1.26e-09,121;CL:0000393,1.73e-09,61;CL:0000211,1.73e-09,61;CL:0002681,3.10e-08,12;CL:0002584,3.10e-08,12;CL:0000680,8.31e-08,58;CL:0000056,8.31e-08,58;CL:0000355,8.31e-08,58;CL:0002188,9.53e-08,5;CL:1000746,1.03e-07,7;CL:1000612,1.03e-07,7;CL:0000187,1.91e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!4.68e-08!239;DOID:162!3.79e-07!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.77e-09!143;UBERON:0004290!3.74e-08!70;UBERON:0000490!1.08e-07!138;UBERON:0000914!1.29e-07!83;UBERON:0002329!1.29e-07!83;UBERON:0003077!1.29e-07!83;UBERON:0003059!1.29e-07!83;UBERON:0007282!1.29e-07!83;UBERON:0009618!1.29e-07!83;UBERON:0007285!1.29e-07!83;UBERON:0003104!4.63e-07!238;UBERON:0009142!4.63e-07!238;UBERON:0003914!9.84e-07!118;UBERON:0002049!9.92e-07!79;UBERON:0007798!9.92e-07!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0001225;2.45e-08;12!UBERON:0008987;2.45e-08;12!UBERON:0000353;3.32e-08;15!UBERON:0000074;7.96e-08;7!UBERON:0001229;7.96e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.92e-13,78;UBERON:0002329,2.00e-09,71;UBERON:0003059,2.00e-09,71;UBERON:0007282,2.00e-09,71;UBERON:0004290,2.00e-09,71;UBERON:0009618,2.00e-09,71;UBERON:0005256,2.24e-09,122;UBERON:0003077,3.26e-09,72;UBERON:0007285,3.26e-09,72;UBERON:0007524,5.24e-09,73;UBERON:0001225,3.10e-08,12;UBERON:0008987,3.10e-08,12;UBERON:0000353,3.72e-08,15;UBERON:0010532,1.03e-07,7;UBERON:0000074,1.03e-07,7;UBERON:0001229,1.03e-07,7;UBERON:0001230,1.03e-07,7;UBERON:0003220,1.03e-07,7;UBERON:0005749,1.03e-07,7;UBERON:0004199,1.03e-07,7;UBERON:0004209,1.03e-07,7;UBERON:0004198,1.03e-07,7;UBERON:0000490,1.69e-07,148;UBERON:0000486,3.04e-07,83;UBERON:0003104,4.01e-07,160;UBERON:0009142,4.01e-07,160;UBERON:0001134,5.14e-07,62;UBERON:0002036,5.14e-07,62;UBERON:0003082,5.14e-07,62 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0.491467873003018,6.97801167972428,0,0.527533956456907,0.123766352960047,0.662794751455832,1.34465029290355,1.80808358407193,0.730310090387373,0.975865597581014,0.369363174230364,1.63200552995402,0.313454721478088,0,1.23186982565596,0.502170558379211,0.534893840235659,0.492603536699674,0.314843125254717,0,0.383829398097213,0,0.919421224478927,0.6024118375565,3.32778609150109,0.154934401160603,0,0.587200878669695,0,0,0,0.223915474239924,0,0,0.436194716338694,0.755751887377619,0,0.697287110717054,0.411167888021826,0.309706370895104,0,0.256160706529101,0,0,0,0,0.376484679085209,1.09162460023138,0.224723484445085,0.306083892370903,0.320929027076094,0,0.659702600373432,0.797854630486527,0.426224750532694,1.16083695451434,0.56738522469114,0.622822248995575,0.251248665256743,1.5644487552606,0,0,0,0.316462387440884,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0.196709770113833,0.393010762749165,0,0.334372990781356,0,0.473447805734733,0,0,0,0,0,0.128091319725675,0,0.493313713811028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.12786256184353,0,0,0,0,0,0.567208902984407,0.665188192387692,1.22968699970376,0,0,0.370784442784429,0,0.174129737299267,0,0,1.14398982156026,0,0.39752481473341,1.72046919021225,0,0,0.838998872419812,2.47606237746061,0.835979866147242,0.775250277507987,1.06729878806013,0,0.402829317109147,0.760272105718513,0,0.735326160691737,0,0.625098097988558,0.898117490504679,1.23872628531654,0,0.949265659568129,1.28241220751285,0,0,0,0.496971951695318,0.12663051166458,0,0,2.83734705758686,0,0,0.98667019366864,0,0.67355336034844,0.163461903113459,0,0,1.17160715916898,0.312160076830321,0.570471821544449,4.03511437489863,2.81842796745036,2.26622122115384,2.94946694074722,0.408308342509787,3.93069815397658,1.34323515528495,0,1.23633464639278,0.910161361938026,1.43723628363248,0.673344455816265,3.87867411603089,0.277064115484183,0,1.5324389789951,0.45071417671979,0.113432183160021,0.179389635688862,0.427114777637135,0.211931901159562,0,0.206105058476878,0,0,0,0.0974370051611986,0,0,0.161646056818812,0,0.302256294682921,0,0,0.272746120590835,0.286804595389004,1.34171076742555,0.265059536642971,0.580969714347592,1.86589899027667,2.01856680700503,0.36497735907583,0,0.643240938192885,0,0.464367928031979,2.16563844500876,0.236613600079688,0,0.482022059766964,0.661763836394364,0.653638332277218,0.237270619111097,0.269662616320329,0.392442930250692,0,0.738155454624648,1.40241773803446,0.4115740113314,0,0,0,0,0,0.122988438543114,0.343135620597051,0.219500570817251,1.1240175325762,1.50793458617446,0.185176890317059,0.325808305310325,2.07986957055916,0,0.231860809950154,0,0.433099343283221,0,0.190254152234598,0,0,0,0.234004265139238,0.148631162288728,0,0,0,0.179117045405697,0,0.383382679165211,0,0,0.207328115540772,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0.672786506072164,0,0.4400297149257,0.129271715757778,0,0,0,0,0.771622122786426,1.41849132023278,2.93064396917709,0,0,0.823240336780769,0.325736184293735,0,0,0,0,0.499864955910285,0,0,0,0,0,2.85273810081437,0,1.43833425785268,0,0.112085143993527,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0.36807447515742,0.500170521059677,1.62759014219841,0.207970861530807,0.535286966391485,0.157702415033935,0.117141414992713,0.300946099727719,2.27407504055985,1.03473071292505,0,0.921845842708516,0.955719759148911,0,0.343143423810856,0,0,0,0.303127571446259,0,0.30239029332968,0,0,0,0,0,0,0,1.85051632563187,1.24293207719189,0.164254312027618,0.519254429183621,0.697262270759755,0.120859449591622,0.40101294060657,1.10497186723076,0.229628896329213,1.0925470080403,0.786746489756545,0.451199612907412,0.847168708148562,0.784349769176855,0,0.633309773357254,2.27466768141793,2.55140557914773,0.431831832204279,1.54227252690289,0.541892875087706,1.00337954770971,0.254876273045038,2.49322802678617,2.23874754722178,0.219259876645935,0,0.512900250232778,0.984043937099117,0,0,0.183138929636687,0,0,0,0,0.290012154876366,1.84858340537573,0.921022048356777,1.92971201478343,0.107420244868274,1.88521702088497,1.78975917573812,0,0,0.576570202095319,0,0.4046311234222,1.39453664789186,0.31481234683064,0.6970372701606,0,0.532306030317022,0,0,0.429374660225974,0.372158369359667,0,0,0,0,0.636406495851874,0.78494864019923,0.359744915166629,0.54907405947211,1.06031162111118,0.404364963146632,0,1.68503382495592,0.975267478179181,0.731140468893853,1.05650146756755,0.409499734223957,0.424216295861138,1.13008116620243,0.551365343546124,0.66343897524122,1.31535265576129,0,1.31178950409327,1.01455188481352,1.8589409885985,0.281695602532241,0.143411352204052,0,0,1.06428319221179,0,0,0.75894634753143,1.74967360122491,0,0.670302275535787,2.17781969722645,0,0,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0.980160863924127,0.371606350251437,0.144269212976445,0.142283686696828,0,0.59873811429845,0.383010740264733,0,0,0,0,1.56679895773023,0,0.50787533340481,0.481764225311099,0.605399121573143,0.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| |||
|short_description=p@chr6:34212929..34212949,+ | |||
}} |
Revision as of 20:36, 13 September 2013
Short description: | p@chr6:34212929..34212949, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:34212929..34212949, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.32e-10 | 250 |
mesodermal cell | 1.26e-09 | 121 |
electrically responsive cell | 1.73e-09 | 61 |
electrically active cell | 1.73e-09 | 61 |
kidney cortical cell | 3.10e-08 | 12 |
renal cortical epithelial cell | 3.10e-08 | 12 |
muscle precursor cell | 8.31e-08 | 58 |
myoblast | 8.31e-08 | 58 |
multi-potent skeletal muscle stem cell | 8.31e-08 | 58 |
glomerular endothelial cell | 9.53e-08 | 5 |
glomerular cell | 1.03e-07 | 7 |
kidney corpuscule cell | 1.03e-07 | 7 |
muscle cell | 1.91e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.92e-13 | 78 |
somite | 2.00e-09 | 71 |
presomitic mesoderm | 2.00e-09 | 71 |
presumptive segmental plate | 2.00e-09 | 71 |
dermomyotome | 2.00e-09 | 71 |
trunk paraxial mesoderm | 2.00e-09 | 71 |
trunk mesenchyme | 2.24e-09 | 122 |
paraxial mesoderm | 3.26e-09 | 72 |
presumptive paraxial mesoderm | 3.26e-09 | 72 |
dense mesenchyme tissue | 5.24e-09 | 73 |
cortex of kidney | 3.10e-08 | 12 |
renal parenchyma | 3.10e-08 | 12 |
parenchyma | 3.72e-08 | 15 |
primitive nephron | 1.03e-07 | 7 |
renal glomerulus | 1.03e-07 | 7 |
renal corpuscle | 1.03e-07 | 7 |
glomerular capsule | 1.03e-07 | 7 |
metanephric mesenchyme | 1.03e-07 | 7 |
glomerular tuft | 1.03e-07 | 7 |
S-shaped body | 1.03e-07 | 7 |
renal vesicle | 1.03e-07 | 7 |
comma-shaped body | 1.03e-07 | 7 |
unilaminar epithelium | 1.69e-07 | 148 |
multilaminar epithelium | 3.04e-07 | 83 |
mesenchyme | 4.01e-07 | 160 |
entire embryonic mesenchyme | 4.01e-07 | 160 |
skeletal muscle tissue | 5.14e-07 | 62 |
striated muscle tissue | 5.14e-07 | 62 |
myotome | 5.14e-07 | 62 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.