FFCP PHASE1:Hg19::chr6:36355431..36355466,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=51513|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18160|TSSclassifier=S|UniProt=Q9Y603|association_with_transcript=0bp_to_uc003olz.1,uc003oma.1,uc003omb.2,uc003omc.2,uc010jwg.2,uc010jwh.2,uc010jwi.2,uc010jwj.2,uc011dtl.1_5end|coexpression_cluster_id=C7|description=CAGE_peak_1_at_ETV7_5end|id=chr6:36355431..36355466,-|ontology_enrichment_celltype=CL:0002057!9.17e-18!42;CL:0000860!1.52e-15!45;CL:0000766!2.47e-12!76;CL:0000738!1.77e-11!140;CL:0002087!1.59e-10!119;CL:0002031!1.07e-09!124;CL:0002194!1.15e-09!63;CL:0000576!1.15e-09!63;CL:0000040!1.15e-09!63;CL:0000559!1.15e-09!63;CL:0000839!4.18e-09!70;CL:0002009!5.94e-09!65;CL:0000557!8.85e-09!71|ontology_enrichment_celltype_v019=CL:0000860;5.17e-31;33!CL:0002057;5.17e-31;33!CL:0000473;2.37e-21;39!CL:0000234;2.37e-21;39!CL:0000576;1.71e-16;48!CL:0000766;8.99e-10;69!CL:0000775;1.60e-08;3|ontology_enrichment_celltype_v019_2=CL:0000860,1.55e-28,42;CL:0002057,1.55e-28,42;CL:0000473,3.96e-24,48;CL:0000234,3.96e-24,48;CL:0000766,9.05e-20,72;CL:0002194,5.48e-18,59;CL:0000576,5.48e-18,59;CL:0000040,5.48e-18,59;CL:0000559,5.48e-18,59;CL:0002009,3.36e-17,61;CL:0000839,1.93e-15,66;CL:0000557,4.04e-15,67;CL:0000763,7.85e-11,108;CL:0000049,7.85e-11,108;CL:0000738,1.49e-10,136;CL:0002087,8.42e-10,115;CL:0002031,4.07e-09,120;CL:0000775,1.45e-08,3;CL:0000988,1.55e-08,177;CL:0002032,9.40e-08,161;CL:0000837,9.40e-08,161;CL:0000037,3.93e-07,168|ontology_enrichment_development_v019=CL:0002057;1.08e-20;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!3.62e-13!102;UBERON:0003061!3.62e-13!102;UBERON:0002193!4.79e-13!112;UBERON:0007023!6.54e-09!115;UBERON:0000178!9.60e-08!15;UBERON:0000179!9.60e-08!15;UBERON:0000463!9.60e-08!15;UBERON:0002371!1.14e-07!80;UBERON:0001474!2.07e-07!86|ontology_enrichment_uberon_v019=UBERON:0000178;2.58e-10;15!UBERON:0000179;2.58e-10;15!UBERON:0000463;2.58e-10;15|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.49e-18,98;UBERON:0003061,5.49e-18,98;UBERON:0002193,1.03e-16,108;UBERON:0001474,1.32e-13,82;UBERON:0002371,1.26e-12,76;UBERON:0004765,7.91e-12,90;UBERON:0000178,2.91e-10,15;UBERON:0000179,2.91e-10,15;UBERON:0000463,2.91e-10,15;UBERON:0002405,3.39e-10,93;UBERON:0001434,5.09e-10,100;UBERON:0003081,6.87e-09,203|phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0.730310090387373,0,0.123121058076788,0.204000691244253,0,0,0,0.125542639594803,0.0764134057479513,0.164201178899891,0,0.393364276848904,0.767658796194425,0.154816123316076,0,0.30120591877825,0,0,0,0,0,0.401088894940283,2.38711957787437,0.223915474239924,0.32389366601898,0,1.01778767145695,0.755751887377619,1.4555043671269,0.232429036905685,0.411167888021826,0,130.324653721934,130.385799623312,107.835896829195,2.06847408441971,1.29096936716765,0,0.752969358170419,0.545812300115692,1.57306439111559,5.20342617030534,0.320929027076094,3.19668562899521,150.412192885143,147.403642982386,151.309786439106,4.06292934080018,1.13477044938228,1.86846674698672,114.569391357075,103.77510076562,101.427190477289,12.1079900526674,2.57794345191295,4.43047342417238,0.845021145247767,0.425208599930087,0.628975936525128,0.44931452458598,0,0,0,0,0.730656615058536,1.75996244461323,0.546138611262131,0.889509253863555,0,0.400395987036012,0,0,0,0,0.587237189370939,0,0,0,0,0.590129310341499,0,0.822405995998037,0.167186495390678,0,0,0,3.56513462032555,1.17842362989935,0.443067789167242,1.08321545506006,1.28091319725675,2.9913649938772,0,0.552700035571697,0.579606171470105,0,0,0,1.47302145506836,0,0,0,0.637130828648193,0,0,0,0.76791966692651,2.49861453104692,0.710331756132051,0.821127996921047,0.80642697289893,0.802320587350522,0.289648807765598,2.43806866313962,0,0,0,0.50133791063589,0.579386075843295,0,1.45990461090791,0.189069634328136,0.221729397462564,0.351339142772504,0.327447688744282,0.364295288292542,0,0,0,0.26591592103773,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0.35576626268671,0.33472061276467,0.402829317109147,0,0.24406205754817,0,0,0.0892997282840798,0.22452937262617,0.112611480483322,0,0,0,1.31780417436063,0,0,0.993943903390637,0,0.264818361626438,0,0.354668382198357,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741800787835671,0,0,0,0,0,0,0,0.600952235626387,0,0.358779271377724,0,0,0,0.103052529238439,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0.286804595389004,0,0,0,0.10366105501537,0.252320850875628,0,3.12899064659632,0.643240938192885,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,1.40241773803446,0,0,0,2.94848165003288,1.18157981336281,0,0.245976877086227,0,0,0,0,0,0,0,0,0.231860809950154,0.117408694235822,0.144366447761074,0,0,0,0,0,0.234004265139238,0,0,0,0.141775097242386,0,0.290633938513962,0.383382679165211,0,0.176096868026452,0,0.864719720501769,0.37872730027914,0,0.381988425558278,0,0,0,0,0,0,0.43596006883328,0,0.129271715757778,0,0,0.531876233169741,1.04007436911366,0.257207374262142,0,0,0,0,0,0,0,1.583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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=51513 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18160 | |||
|TSSclassifier=S | |||
|UniProt=Q9Y603 | |||
|association_with_transcript=0bp_to_uc003olz.1,uc003oma.1,uc003omb.2,uc003omc.2,uc010jwg.2,uc010jwh.2,uc010jwi.2,uc010jwj.2,uc011dtl.1_5end | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_1_at_ETV7_5end | |||
|id=chr6:36355431..36355466,- | |||
|ontology_enrichment_celltype=CL:0002057!9.17e-18!42;CL:0000860!1.52e-15!45;CL:0000766!2.47e-12!76;CL:0000738!1.77e-11!140;CL:0002087!1.59e-10!119;CL:0002031!1.07e-09!124;CL:0002194!1.15e-09!63;CL:0000576!1.15e-09!63;CL:0000040!1.15e-09!63;CL:0000559!1.15e-09!63;CL:0000839!4.18e-09!70;CL:0002009!5.94e-09!65;CL:0000557!8.85e-09!71 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.17e-31;33!CL:0002057;5.17e-31;33!CL:0000473;2.37e-21;39!CL:0000234;2.37e-21;39!CL:0000576;1.71e-16;48!CL:0000766;8.99e-10;69!CL:0000775;1.60e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.55e-28,42;CL:0002057,1.55e-28,42;CL:0000473,3.96e-24,48;CL:0000234,3.96e-24,48;CL:0000766,9.05e-20,72;CL:0002194,5.48e-18,59;CL:0000576,5.48e-18,59;CL:0000040,5.48e-18,59;CL:0000559,5.48e-18,59;CL:0002009,3.36e-17,61;CL:0000839,1.93e-15,66;CL:0000557,4.04e-15,67;CL:0000763,7.85e-11,108;CL:0000049,7.85e-11,108;CL:0000738,1.49e-10,136;CL:0002087,8.42e-10,115;CL:0002031,4.07e-09,120;CL:0000775,1.45e-08,3;CL:0000988,1.55e-08,177;CL:0002032,9.40e-08,161;CL:0000837,9.40e-08,161;CL:0000037,3.93e-07,168 | |||
|ontology_enrichment_development_v019=CL:0002057;1.08e-20;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.62e-13!102;UBERON:0003061!3.62e-13!102;UBERON:0002193!4.79e-13!112;UBERON:0007023!6.54e-09!115;UBERON:0000178!9.60e-08!15;UBERON:0000179!9.60e-08!15;UBERON:0000463!9.60e-08!15;UBERON:0002371!1.14e-07!80;UBERON:0001474!2.07e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.58e-10;15!UBERON:0000179;2.58e-10;15!UBERON:0000463;2.58e-10;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.49e-18,98;UBERON:0003061,5.49e-18,98;UBERON:0002193,1.03e-16,108;UBERON:0001474,1.32e-13,82;UBERON:0002371,1.26e-12,76;UBERON:0004765,7.91e-12,90;UBERON:0000178,2.91e-10,15;UBERON:0000179,2.91e-10,15;UBERON:0000463,2.91e-10,15;UBERON:0002405,3.39e-10,93;UBERON:0001434,5.09e-10,100;UBERON:0003081,6.87e-09,203 | |||
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| |||
|short_description=p1@ETV7 | |||
}} |
Revision as of 20:44, 13 September 2013
Short description: | p1@ETV7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ETV7_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 0bp_to_uc003olz.1, uc003oma.1, uc003omb.2, uc003omc.2, uc010jwg.2, uc010jwh.2, uc010jwi.2, uc010jwj.2, uc011dtl.1_5end |
EntrezGene: | ETV7 |
HGNC: | 18160 |
UniProt: | Q9Y603 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.55e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.55e-28 | 42 |
defensive cell | 3.96e-24 | 48 |
phagocyte | 3.96e-24 | 48 |
myeloid leukocyte | 9.05e-20 | 72 |
monopoietic cell | 5.48e-18 | 59 |
monocyte | 5.48e-18 | 59 |
monoblast | 5.48e-18 | 59 |
promonocyte | 5.48e-18 | 59 |
macrophage dendritic cell progenitor | 3.36e-17 | 61 |
myeloid lineage restricted progenitor cell | 1.93e-15 | 66 |
granulocyte monocyte progenitor cell | 4.04e-15 | 67 |
myeloid cell | 7.85e-11 | 108 |
common myeloid progenitor | 7.85e-11 | 108 |
leukocyte | 1.49e-10 | 136 |
nongranular leukocyte | 8.42e-10 | 115 |
hematopoietic lineage restricted progenitor cell | 4.07e-09 | 120 |
neutrophil | 1.45e-08 | 3 |
hematopoietic cell | 1.55e-08 | 177 |
hematopoietic oligopotent progenitor cell | 9.40e-08 | 161 |
hematopoietic multipotent progenitor cell | 9.40e-08 | 161 |
hematopoietic stem cell | 3.93e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.49e-18 | 98 |
blood island | 5.49e-18 | 98 |
hemolymphoid system | 1.03e-16 | 108 |
bone element | 1.32e-13 | 82 |
bone marrow | 1.26e-12 | 76 |
skeletal element | 7.91e-12 | 90 |
blood | 2.91e-10 | 15 |
haemolymphatic fluid | 2.91e-10 | 15 |
organism substance | 2.91e-10 | 15 |
immune system | 3.39e-10 | 93 |
skeletal system | 5.09e-10 | 100 |
lateral plate mesoderm | 6.87e-09 | 203 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.