FFCP PHASE1:Hg19::chr7:75864279..75864290,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=222183|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26729|TSSclassifier=S|UniProt=|association_with_transcript=-9bp_to_ENST00000479294_5end|coexpression_cluster_id=C41|description=CAGE_peak_5_at_SRRM3_5end|id=chr7:75864279..75864290,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0003056;6.76e-18;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001905!5.22e-79!2;UBERON:0002757!5.22e-79!2;UBERON:0010134!5.22e-79!2;UBERON:0002784!5.22e-79!2;UBERON:0005408!5.22e-79!2;UBERON:0001899!5.22e-79!2;UBERON:0003296!3.31e-40!4;UBERON:0010133!3.31e-40!4;UBERON:0000966!1.70e-32!5;UBERON:0005388!1.70e-32!5;UBERON:0001802!1.70e-32!5;UBERON:0001894!1.61e-23!7;UBERON:0006222!1.61e-23!7;UBERON:0000970!1.26e-18!20;UBERON:0002104!8.78e-18!21;UBERON:0000020!2.57e-16!23;UBERON:0001032!1.13e-15!24;UBERON:0004456!1.13e-15!24;UBERON:0003056!6.84e-11!61;UBERON:0000019!2.26e-09!19;UBERON:0000047!2.26e-09!19;UBERON:0004088!2.26e-09!19;UBERON:0003072!2.26e-09!19;UBERON:0003071!2.26e-09!19;UBERON:0004128!2.26e-09!19;UBERON:0001456!1.42e-08!21;UBERON:0003075!6.09e-08!86;UBERON:0007284!6.09e-08!86;UBERON:0005743!7.38e-08!86;UBERON:0002346!1.28e-07!90;UBERON:0000073!3.50e-07!94;UBERON:0001016!3.50e-07!94|ontology_enrichment_uberon_v019=UBERON:0001905;4.22e-98;2!UBERON:0002757;4.22e-98;2!UBERON:0010134;4.22e-98;2!UBERON:0005408;4.22e-98;2!UBERON:0001899;4.22e-98;2!UBERON:0003296;8.47e-50;4!UBERON:0010133;8.47e-50;4!UBERON:0002784;8.47e-50;4!UBERON:0001894;4.86e-29;7!UBERON:0000966;2.66e-11;5!UBERON:0005388;2.66e-11;5!UBERON:0001802;2.66e-11;5!UBERON:0000970;5.16e-11;20!UBERON:0002104;1.53e-10;21!UBERON:0000020;1.02e-09;23!UBERON:0001032;2.35e-09;24!UBERON:0004456;2.35e-09;24|ontology_enrichment_uberon_v019_2=UBERON:0001905,4.22e-98,2;UBERON:0002757,4.22e-98,2;UBERON:0010134,4.22e-98,2;UBERON:0005408,4.22e-98,2;UBERON:0001899,4.22e-98,2;UBERON:0003296,8.47e-50,4;UBERON:0010133,8.47e-50,4;UBERON:0002784,8.47e-50,4;UBERON:0001894,4.86e-29,7;UBERON:0006222,4.86e-29,7;UBERON:0000970,1.53e-10,21;UBERON:0002104,1.53e-10,21;UBERON:0000966,1.22e-09,6;UBERON:0005388,1.22e-09,6;UBERON:0001802,1.22e-09,6;UBERON:0000020,2.35e-09,24;UBERON:0001032,2.35e-09,24;UBERON:0004456,2.35e-09,24;UBERON:0003056,4.50e-08,61|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.06765333404958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21421101526972,2.01770233331294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.86107662248582,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p5@SRRM3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=222183 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26729 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-9bp_to_ENST00000479294_5end | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_5_at_SRRM3_5end | |||
|id=chr7:75864279..75864290,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;6.76e-18;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!5.22e-79!2;UBERON:0002757!5.22e-79!2;UBERON:0010134!5.22e-79!2;UBERON:0002784!5.22e-79!2;UBERON:0005408!5.22e-79!2;UBERON:0001899!5.22e-79!2;UBERON:0003296!3.31e-40!4;UBERON:0010133!3.31e-40!4;UBERON:0000966!1.70e-32!5;UBERON:0005388!1.70e-32!5;UBERON:0001802!1.70e-32!5;UBERON:0001894!1.61e-23!7;UBERON:0006222!1.61e-23!7;UBERON:0000970!1.26e-18!20;UBERON:0002104!8.78e-18!21;UBERON:0000020!2.57e-16!23;UBERON:0001032!1.13e-15!24;UBERON:0004456!1.13e-15!24;UBERON:0003056!6.84e-11!61;UBERON:0000019!2.26e-09!19;UBERON:0000047!2.26e-09!19;UBERON:0004088!2.26e-09!19;UBERON:0003072!2.26e-09!19;UBERON:0003071!2.26e-09!19;UBERON:0004128!2.26e-09!19;UBERON:0001456!1.42e-08!21;UBERON:0003075!6.09e-08!86;UBERON:0007284!6.09e-08!86;UBERON:0005743!7.38e-08!86;UBERON:0002346!1.28e-07!90;UBERON:0000073!3.50e-07!94;UBERON:0001016!3.50e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;4.22e-98;2!UBERON:0002757;4.22e-98;2!UBERON:0010134;4.22e-98;2!UBERON:0005408;4.22e-98;2!UBERON:0001899;4.22e-98;2!UBERON:0003296;8.47e-50;4!UBERON:0010133;8.47e-50;4!UBERON:0002784;8.47e-50;4!UBERON:0001894;4.86e-29;7!UBERON:0000966;2.66e-11;5!UBERON:0005388;2.66e-11;5!UBERON:0001802;2.66e-11;5!UBERON:0000970;5.16e-11;20!UBERON:0002104;1.53e-10;21!UBERON:0000020;1.02e-09;23!UBERON:0001032;2.35e-09;24!UBERON:0004456;2.35e-09;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,4.22e-98,2;UBERON:0002757,4.22e-98,2;UBERON:0010134,4.22e-98,2;UBERON:0005408,4.22e-98,2;UBERON:0001899,4.22e-98,2;UBERON:0003296,8.47e-50,4;UBERON:0010133,8.47e-50,4;UBERON:0002784,8.47e-50,4;UBERON:0001894,4.86e-29,7;UBERON:0006222,4.86e-29,7;UBERON:0000970,1.53e-10,21;UBERON:0002104,1.53e-10,21;UBERON:0000966,1.22e-09,6;UBERON:0005388,1.22e-09,6;UBERON:0001802,1.22e-09,6;UBERON:0000020,2.35e-09,24;UBERON:0001032,2.35e-09,24;UBERON:0004456,2.35e-09,24;UBERON:0003056,4.50e-08,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.06765333404958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21421101526972,2.01770233331294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.86107662248582,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@SRRM3 | |||
}} |
Revision as of 02:00, 14 September 2013
Short description: | p5@SRRM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_SRRM3_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | -9bp_to_ENST00000479294_5end |
EntrezGene: | SRRM3 |
HGNC: | 26729 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 4.22e-98 | 2 |
regional part of epithalamus | 4.22e-98 | 2 |
secretory circumventricular organ | 4.22e-98 | 2 |
circumventricular organ | 4.22e-98 | 2 |
epithalamus | 4.22e-98 | 2 |
gland of diencephalon | 8.47e-50 | 4 |
neuroendocrine gland | 8.47e-50 | 4 |
regional part of diencephalon | 8.47e-50 | 4 |
diencephalon | 4.86e-29 | 7 |
future diencephalon | 4.86e-29 | 7 |
eye | 1.53e-10 | 21 |
visual system | 1.53e-10 | 21 |
retina | 1.22e-09 | 6 |
photoreceptor array | 1.22e-09 | 6 |
posterior segment of eyeball | 1.22e-09 | 6 |
sense organ | 2.35e-09 | 24 |
sensory system | 2.35e-09 | 24 |
entire sense organ system | 2.35e-09 | 24 |
pre-chordal neural plate | 4.50e-08 | 61 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.