FFCP PHASE1:Hg19::chr9:35754222..35754237,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=692094|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29663|TSSclassifier=S|UniProt=Q1L6U9|association_with_transcript=28bp_to_ENST00000436428_5end|coexpression_cluster_id=C254|description=CAGE_peak_3_at_MSMP_5end|id=chr9:35754222..35754237,-|ontology_enrichment_celltype=CL:0002139!6.43e-50!24;CL:0000115!4.92e-41!35;CL:0000071!1.30e-35!18;CL:0002546!1.30e-35!18;CL:0002078!1.36e-31!44;CL:0002543!2.48e-25!6;CL:0000213!3.12e-23!57;CL:0000215!3.12e-23!57;CL:0005020!7.31e-16!6;CL:0002138!7.31e-16!6;CL:0005022!7.31e-16!6;CL:0002618!1.68e-13!3;CL:0000064!8.46e-13!3;CL:0005012!8.46e-13!3;CL:0000067!8.46e-13!3;CL:0002304!8.46e-13!3;CL:0000708!1.53e-12!3;CL:1000413!7.84e-11!9;CL:0000222!1.08e-09!119;CL:0000306!1.21e-09!4;CL:0002222!1.21e-09!4;CL:0002224!1.21e-09!4;CL:0002549!1.62e-08!2;CL:0002575!2.29e-08!2;CL:0002602!2.29e-08!2;CL:0000076!3.07e-08!62;CL:0000066!9.17e-08!254;CL:0000669!2.44e-07!5;CL:0000327!8.28e-07!14|ontology_enrichment_celltype_v019=CL:0002543;3.10e-79;6!CL:0002618;1.83e-40;3!CL:0000071;1.49e-35;18!CL:0002139;1.42e-26;24!CL:0000064;1.04e-18;3!CL:0000067;1.04e-18;3!CL:0005012;1.04e-18;3!CL:0002304;1.04e-18;3!CL:0000115;7.46e-18;36!CL:0000342;2.25e-14;1!CL:0002565;2.25e-14;1!CL:0000306;3.85e-14;4!CL:0002222;3.85e-14;4!CL:0002224;3.85e-14;4!CL:0000213;1.06e-09;58!CL:0000215;1.06e-09;58!CL:0002078;1.73e-09;45!CL:0000076;1.62e-08;63!CL:0000075;4.09e-08;27!CL:0002262;5.55e-08;2!CL:1000398;5.55e-08;2|ontology_enrichment_celltype_v019_2=CL:0002543,1.81e-79,6;CL:0002618,1.71e-40,3;CL:0000071,1.38e-35,18;CL:0002546,1.38e-35,18;CL:0002139,1.34e-26,24;CL:0000115,6.70e-23,36;CL:0000064,1.24e-18,3;CL:0000067,1.24e-18,3;CL:0005012,1.24e-18,3;CL:0002304,1.24e-18,3;CL:0002078,3.47e-18,45;CL:0000342,2.41e-14,1;CL:0002565,2.41e-14,1;CL:0000306,3.61e-14,4;CL:0002222,3.61e-14,4;CL:0002224,3.61e-14,4;CL:0000213,5.98e-14,58;CL:0000215,5.98e-14,58;CL:0000076,8.00e-10,63;CL:0000066,9.56e-09,253;CL:0000075,4.16e-08,27;CL:0002262,5.02e-08,2;CL:1000398,5.02e-08,2|ontology_enrichment_development_v019=CL:0002546;1.49e-35;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001986!1.30e-35!18;UBERON:0004638!1.30e-35!18;UBERON:0004852!1.30e-35!18;UBERON:0000487!1.41e-28!22;UBERON:0002049!8.69e-28!79;UBERON:0007798!8.69e-28!79;UBERON:0006914!8.83e-25!25;UBERON:0004535!8.00e-20!110;UBERON:0001009!4.04e-19!113;UBERON:0007625!3.56e-17!11;UBERON:0002200!1.02e-16!11;UBERON:0006876!1.02e-16!11;UBERON:0001638!1.19e-16!9;UBERON:0003920!1.19e-16!9;UBERON:0004582!1.19e-16!9;UBERON:0000488!1.32e-16!4;UBERON:0000055!2.26e-16!69;UBERON:0001801!2.83e-13!14;UBERON:0001778!8.46e-13!3;UBERON:0001775!8.46e-13!3;UBERON:0003210!1.53e-12!3;UBERON:0001473!7.81e-12!8;UBERON:0004536!7.81e-12!8;UBERON:0006558!7.81e-12!8;UBERON:0002203!4.30e-11!6;UBERON:0001768!4.30e-11!6;UBERON:0003915!7.84e-11!9;UBERON:0004700!7.84e-11!9;UBERON:0001917!7.84e-11!9;UBERON:0001981!3.65e-10!60;UBERON:0007500!3.65e-10!60;UBERON:0004537!3.65e-10!60;UBERON:0006965!3.65e-10!60;UBERON:0010077!1.21e-09!4;UBERON:0005389!1.21e-09!4;UBERON:0000484!1.21e-09!4;UBERON:0002546!1.21e-09!4;UBERON:0000965!1.21e-09!4;UBERON:0001803!1.21e-09!4;UBERON:0003073!1.21e-09!4;UBERON:0005426!1.21e-09!4;UBERON:0000019!1.64e-09!19;UBERON:0000047!1.64e-09!19;UBERON:0004088!1.64e-09!19;UBERON:0003072!1.64e-09!19;UBERON:0003071!1.64e-09!19;UBERON:0004128!1.64e-09!19;UBERON:0000477!1.84e-09!286;UBERON:0002465!2.07e-09!10;UBERON:0000970!5.52e-09!20;UBERON:0003947!1.62e-08!2;UBERON:0005629!1.62e-08!2;UBERON:0005358!1.62e-08!2;UBERON:0001886!1.62e-08!2;UBERON:0004086!1.62e-08!2;UBERON:0005282!1.62e-08!2;UBERON:0005281!1.62e-08!2;UBERON:0002104!1.65e-08!21;UBERON:0001456!1.65e-08!21;UBERON:0009568!2.29e-08!2;UBERON:0002216!2.29e-08!2;UBERON:0002209!2.29e-08!2;UBERON:0002213!2.29e-08!2;UBERON:0004267!2.29e-08!2;UBERON:0006444!2.29e-08!2;UBERON:0001995!2.29e-08!2;UBERON:0004715!2.29e-08!2;UBERON:0001468!2.29e-08!2;UBERON:0001130!2.29e-08!2;UBERON:0001066!2.29e-08!2;UBERON:0002066!2.95e-08!5;UBERON:0000020!1.11e-07!23;UBERON:0004872!2.07e-07!84;UBERON:0005284!2.28e-07!5;UBERON:0003586!2.44e-07!5;UBERON:0001032!2.56e-07!24;UBERON:0004456!2.56e-07!24;UBERON:0000490!6.41e-07!138|ontology_enrichment_uberon_v019=UBERON:0001638;7.84e-53;9!UBERON:0003920;7.84e-53;9!UBERON:0004582;7.84e-53;9!UBERON:0004638;1.49e-35;18!UBERON:0001986;1.49e-35;18!UBERON:0004852;1.49e-35;18!UBERON:0000488;3.01e-30;4!UBERON:0007625;7.21e-30;11!UBERON:0000487;5.03e-29;22!UBERON:0000490;4.83e-27;33!UBERON:0006914;1.71e-25;25!UBERON:0002066;1.35e-24;5!UBERON:0001801;1.70e-23;14!UBERON:0002203;2.05e-20;6!UBERON:0001768;2.05e-20;6!UBERON:0002200;2.05e-20;6!UBERON:0001778;1.04e-18;3!UBERON:0001775;1.04e-18;3!UBERON:0000019;2.47e-17;19!UBERON:0000047;2.47e-17;19!UBERON:0004088;2.47e-17;19!UBERON:0010230;2.47e-17;19!UBERON:0000970;1.81e-16;20!UBERON:0002104;1.09e-15;21!UBERON:0001456;1.09e-15;21!UBERON:0002506;2.25e-14;1!UBERON:0001769;2.25e-14;1!UBERON:0000020;2.52e-14;23!UBERON:0010077;3.85e-14;4!UBERON:0005389;3.85e-14;4!UBERON:0000484;3.85e-14;4!UBERON:0000965;3.85e-14;4!UBERON:0001803;3.85e-14;4!UBERON:0010260;5.77e-14;9!UBERON:0001032;9.94e-14;24!UBERON:0004456;9.94e-14;24!UBERON:0006876;1.99e-11;11!UBERON:0010371;3.03e-10;31!UBERON:0002049;4.19e-09;75!UBERON:0007798;4.19e-09;75!UBERON:0000483;7.67e-09;136!UBERON:0007500;1.26e-08;56!UBERON:0001981;1.26e-08;56!UBERON:0004537;1.26e-08;56!UBERON:0001009;1.29e-08;112!UBERON:0001281;5.55e-08;2!UBERON:0003497;5.55e-08;2!UBERON:0003909;5.55e-08;2!UBERON:0003835;5.55e-08;2!UBERON:0004535;6.29e-07;109|ontology_enrichment_uberon_v019_2=UBERON:0001638,5.48e-53,9;UBERON:0003920,5.48e-53,9;UBERON:0004582,5.48e-53,9;UBERON:0004638,1.38e-35,18;UBERON:0001986,1.38e-35,18;UBERON:0004852,1.38e-35,18;UBERON:0000488,3.87e-30,4;UBERON:0007625,7.90e-30,11;UBERON:0000487,4.73e-29,22;UBERON:0006914,1.61e-25,25;UBERON:0002066,1.30e-24,5;UBERON:0001801,1.82e-23,14;UBERON:0002203,2.42e-20,6;UBERON:0001768,2.42e-20,6;UBERON:0002200,2.42e-20,6;UBERON:0002049,2.53e-19,78;UBERON:0007798,2.53e-19,78;UBERON:0001778,1.24e-18,3;UBERON:0001775,1.24e-18,3;UBERON:0000019,1.90e-16,20;UBERON:0000047,1.90e-16,20;UBERON:0010312,1.90e-16,20;UBERON:0004088,1.90e-16,20;UBERON:0010230,1.90e-16,20;UBERON:0003072,1.90e-16,20;UBERON:0004128,1.90e-16,20;UBERON:0003071,1.90e-16,20;UBERON:0000970,1.15e-15,21;UBERON:0002104,1.15e-15,21;UBERON:0001456,5.89e-15,22;UBERON:0002506,2.41e-14,1;UBERON:0001769,2.41e-14,1;UBERON:0010077,3.61e-14,4;UBERON:0005389,3.61e-14,4;UBERON:0000484,3.61e-14,4;UBERON:0002546,3.61e-14,4;UBERON:0000965,3.61e-14,4;UBERON:0001803,3.61e-14,4;UBERON:0003073,3.61e-14,4;UBERON:0005426,3.61e-14,4;UBERON:0010260,5.65e-14,9;UBERON:0000020,1.04e-13,24;UBERON:0001032,1.04e-13,24;UBERON:0004456,1.04e-13,24;UBERON:0007500,1.06e-13,59;UBERON:0001981,1.06e-13,59;UBERON:0004537,1.06e-13,59;UBERON:0006965,1.06e-13,59;UBERON:0004535,1.78e-13,109;UBERON:0001009,4.42e-13,112;UBERON:0000055,8.69e-12,68;UBERON:0006876,2.18e-11,11;UBERON:0005085,1.30e-10,31;UBERON:0000490,1.27e-09,148;UBERON:0004872,1.63e-09,83;UBERON:0001281,5.02e-08,2;UBERON:0003497,5.02e-08,2;UBERON:0003909,5.02e-08,2;UBERON:0003835,5.02e-08,2;UBERON:0000076,1.54e-07,8;UBERON:0000483,6.68e-07,306;UBERON:0000119,8.11e-07,309|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0.331397375727916,0,0,0,0,0,0.816002764977012,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0.973269740605272,0.283604451492204,2.21729397462564,2.0202000709419,0,0,0,0,0,0,0,0,0,0.993812036833525,0,0,1.13061588384802,0,0.275118041940067,0.417989933073621,0,0.35576626268671,0.33472061276467,0.402829317109147,0,0.732186172644509,0,0.81014194788176,3.12549048994279,3.14341121676638,1.46394924628319,4.5994991239765,1.89853131913626,3.66403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0,0,0,0,0,0,0,1.3725424823882,0,0,0,0,0,0,1.44331342025273,0.231860809950154,2.23076519048061,0.288732895522148,0.462985512576611,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560655421726804,0.43596006883328,0.80672114403045,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35632511849868,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510281115829547,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0.313932918407225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.537862017998534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,11.7905286005593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p3@MSMP}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=692094 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29663 | |||
|TSSclassifier=S | |||
|UniProt=Q1L6U9 | |||
|association_with_transcript=28bp_to_ENST00000436428_5end | |||
|coexpression_cluster_id=C254 | |||
|description=CAGE_peak_3_at_MSMP_5end | |||
|id=chr9:35754222..35754237,- | |||
|ontology_enrichment_celltype=CL:0002139!6.43e-50!24;CL:0000115!4.92e-41!35;CL:0000071!1.30e-35!18;CL:0002546!1.30e-35!18;CL:0002078!1.36e-31!44;CL:0002543!2.48e-25!6;CL:0000213!3.12e-23!57;CL:0000215!3.12e-23!57;CL:0005020!7.31e-16!6;CL:0002138!7.31e-16!6;CL:0005022!7.31e-16!6;CL:0002618!1.68e-13!3;CL:0000064!8.46e-13!3;CL:0005012!8.46e-13!3;CL:0000067!8.46e-13!3;CL:0002304!8.46e-13!3;CL:0000708!1.53e-12!3;CL:1000413!7.84e-11!9;CL:0000222!1.08e-09!119;CL:0000306!1.21e-09!4;CL:0002222!1.21e-09!4;CL:0002224!1.21e-09!4;CL:0002549!1.62e-08!2;CL:0002575!2.29e-08!2;CL:0002602!2.29e-08!2;CL:0000076!3.07e-08!62;CL:0000066!9.17e-08!254;CL:0000669!2.44e-07!5;CL:0000327!8.28e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0002543;3.10e-79;6!CL:0002618;1.83e-40;3!CL:0000071;1.49e-35;18!CL:0002139;1.42e-26;24!CL:0000064;1.04e-18;3!CL:0000067;1.04e-18;3!CL:0005012;1.04e-18;3!CL:0002304;1.04e-18;3!CL:0000115;7.46e-18;36!CL:0000342;2.25e-14;1!CL:0002565;2.25e-14;1!CL:0000306;3.85e-14;4!CL:0002222;3.85e-14;4!CL:0002224;3.85e-14;4!CL:0000213;1.06e-09;58!CL:0000215;1.06e-09;58!CL:0002078;1.73e-09;45!CL:0000076;1.62e-08;63!CL:0000075;4.09e-08;27!CL:0002262;5.55e-08;2!CL:1000398;5.55e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002543,1.81e-79,6;CL:0002618,1.71e-40,3;CL:0000071,1.38e-35,18;CL:0002546,1.38e-35,18;CL:0002139,1.34e-26,24;CL:0000115,6.70e-23,36;CL:0000064,1.24e-18,3;CL:0000067,1.24e-18,3;CL:0005012,1.24e-18,3;CL:0002304,1.24e-18,3;CL:0002078,3.47e-18,45;CL:0000342,2.41e-14,1;CL:0002565,2.41e-14,1;CL:0000306,3.61e-14,4;CL:0002222,3.61e-14,4;CL:0002224,3.61e-14,4;CL:0000213,5.98e-14,58;CL:0000215,5.98e-14,58;CL:0000076,8.00e-10,63;CL:0000066,9.56e-09,253;CL:0000075,4.16e-08,27;CL:0002262,5.02e-08,2;CL:1000398,5.02e-08,2 | |||
|ontology_enrichment_development_v019=CL:0002546;1.49e-35;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p3@MSMP | |||
}} |
Revision as of 08:58, 14 September 2013
Short description: | p3@MSMP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_MSMP_5end |
Coexpression cluster: | C254_prostate_rhabdomyosarcoma_seminal_Fibroblast_transitionalcell_Smooth_Iris |
Association with transcript: | 28bp_to_ENST00000436428_5end |
EntrezGene: | MSMP |
HGNC: | 29663 |
UniProt: | Q1L6U9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vein endothelial cell | 1.81e-79 | 6 |
endothelial cell of umbilical vein | 1.71e-40 | 3 |
blood vessel endothelial cell | 1.38e-35 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.38e-35 | 18 |
endothelial cell of vascular tree | 1.34e-26 | 24 |
endothelial cell | 6.70e-23 | 36 |
ciliated cell | 1.24e-18 | 3 |
ciliated epithelial cell | 1.24e-18 | 3 |
multi-ciliated epithelial cell | 1.24e-18 | 3 |
non-pigmented ciliary epithelial cell | 1.24e-18 | 3 |
meso-epithelial cell | 3.47e-18 | 45 |
pigment cell (sensu Vertebrata) | 2.41e-14 | 1 |
iris pigment epithelial cell | 2.41e-14 | 1 |
crystallin accumulating cell | 3.61e-14 | 4 |
vertebrate lens cell | 3.61e-14 | 4 |
lens epithelial cell | 3.61e-14 | 4 |
lining cell | 5.98e-14 | 58 |
barrier cell | 5.98e-14 | 58 |
squamous epithelial cell | 8.00e-10 | 63 |
epithelial cell | 9.56e-09 | 253 |
columnar/cuboidal epithelial cell | 4.16e-08 | 27 |
endothelial cell of sinusoid | 5.02e-08 | 2 |
endothelial cell of hepatic sinusoid | 5.02e-08 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.