FFCP PHASE1:Mm9::chr9:44929248..44929260,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=105|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr9:44929248..44929260,+|id=chr9:44929248..44929260,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002250,7.69e-09,3;CL:0002610,2.98e-07,3;CL:0002563,4.74e-07,9;CL:0002251,4.74e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000064!1.67e-18!99;UBERON:0007811!1.05e-09!86;UBERON:0000063!6.05e-09!35;UBERON:0000153!8.73e-09!94;UBERON:0002370!3.10e-08!23;UBERON:0000974!3.10e-08!23;UBERON:0004807!3.10e-08!23;UBERON:0005058!3.10e-08!23;UBERON:0003351!3.10e-08!23;UBERON:0009113!3.10e-08!23;UBERON:0003295!3.10e-08!23;UBERON:0009722!3.10e-08!23;UBERON:0005562!3.10e-08!23;UBERON:0007690!3.10e-08!23;UBERON:0006562!9.65e-08!24;UBERON:0003408!9.65e-08!24;UBERON:0001557!9.65e-08!24;UBERON:0001042!9.65e-08!24;UBERON:0008814!9.65e-08!24;UBERON:0009145!9.65e-08!24;UBERON:0002298!5.29e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.68e-12,23;UBERON:0000974,1.68e-12,23;UBERON:0004807,1.68e-12,23;UBERON:0005058,1.68e-12,23;UBERON:0003351,1.68e-12,23;UBERON:0009113,1.68e-12,23;UBERON:0003295,1.68e-12,23;UBERON:0009722,1.68e-12,23;UBERON:0005562,1.68e-12,23;UBERON:0007690,1.68e-12,23;UBERON:0006562,7.21e-12,24;UBERON:0003408,7.21e-12,24;UBERON:0001557,7.21e-12,24;UBERON:0001042,7.21e-12,24;UBERON:0008814,7.21e-12,24;UBERON:0009145,7.21e-12,24;UBERON:0000072,2.97e-10,27;UBERON:0004177,2.30e-09,29;UBERON:0005057,2.30e-09,29;UBERON:0003929,5.99e-09,55;UBERON:0011216,3.55e-08,194;UBERON:0000344,2.43e-07,15;UBERON:0000077,2.57e-07,35;UBERON:0004684,2.98e-07,3;UBERON:0002275,2.98e-07,3;UBERON:0003350,4.74e-07,9;UBERON:0004808,4.74e-07,9;UBERON:0001277,4.74e-07,9;UBERON:0007811,4.82e-07,36;UBERON:0000490,8.35e-07,66|phase1_expression=0,0,0,0,0,3.86122325397347,1.63528848416868,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,0.255129870453209,0,0,1.59992422793407,0.68822784320151,1.14846392823004,0.86152399231815,1.29282739611533,0,0.252030129759931,1.77384408524244,0,0,0,14.731432607315,14.7948834369058,12.8626694445293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0958454710182364,0,1.10115880999389,1.78762273319263,1.68967186581868,0,0,0,0.837548997004143,1.12552522006336,0.30559649555362,0,0,0,0.075726193333184,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517875767294343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17112318804619,1.46612694769419,1.27728527604296,0,0,0,1.49790639404823,10.5225138648284,0,1.73824320192276,1.53429274398198,1.24672826735736,7.30085683804909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.474529061544512,0,0,0,0,2.69645822596266,0.216138049874694,1.39398891278057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.575392274901621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0.937693492737625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329940245945071,0,0,0,0,0,0,0,0,0,0,0,0,1.02131881726136,0,0,0,0,0,0,0,0.23467170806371,0.21183207086382,0,0.49465875882444,0.484393280087717,0.0603129249281559,0,0,0.874442509889552,1.11255181206306,0,0,0,0,0.136694227721025,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16653475962614,0,0,0,0,0,0,0,0,0,0,0,0,3.47612232690996,0,1.33524244314275,2.20865399062252,1.9692936523423,0.993406773906324,2.52410443991935,1.18151621739662,2.82706059854813,2.74344503957999,2.82313318383153,1.26695244961678,2.21287235772758,1.63627663054197,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37016503954128,0.755393897389701,0,0.45032120322422,0.906284817968409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941093804153306,0,0.182927972872773,0,0,0,0,0,0,0.154936841185966,0,0.499621155875892,0,0.214871054048298,0,0,0|short_description=p@chr9:44929248..44929260,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=105 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr9:44929248..44929260,+ | |||
|id=chr9:44929248..44929260,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002250,7.69e-09,3;CL:0002610,2.98e-07,3;CL:0002563,4.74e-07,9;CL:0002251,4.74e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000064!1.67e-18!99;UBERON:0007811!1.05e-09!86;UBERON:0000063!6.05e-09!35;UBERON:0000153!8.73e-09!94;UBERON:0002370!3.10e-08!23;UBERON:0000974!3.10e-08!23;UBERON:0004807!3.10e-08!23;UBERON:0005058!3.10e-08!23;UBERON:0003351!3.10e-08!23;UBERON:0009113!3.10e-08!23;UBERON:0003295!3.10e-08!23;UBERON:0009722!3.10e-08!23;UBERON:0005562!3.10e-08!23;UBERON:0007690!3.10e-08!23;UBERON:0006562!9.65e-08!24;UBERON:0003408!9.65e-08!24;UBERON:0001557!9.65e-08!24;UBERON:0001042!9.65e-08!24;UBERON:0008814!9.65e-08!24;UBERON:0009145!9.65e-08!24;UBERON:0002298!5.29e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.68e-12,23;UBERON:0000974,1.68e-12,23;UBERON:0004807,1.68e-12,23;UBERON:0005058,1.68e-12,23;UBERON:0003351,1.68e-12,23;UBERON:0009113,1.68e-12,23;UBERON:0003295,1.68e-12,23;UBERON:0009722,1.68e-12,23;UBERON:0005562,1.68e-12,23;UBERON:0007690,1.68e-12,23;UBERON:0006562,7.21e-12,24;UBERON:0003408,7.21e-12,24;UBERON:0001557,7.21e-12,24;UBERON:0001042,7.21e-12,24;UBERON:0008814,7.21e-12,24;UBERON:0009145,7.21e-12,24;UBERON:0000072,2.97e-10,27;UBERON:0004177,2.30e-09,29;UBERON:0005057,2.30e-09,29;UBERON:0003929,5.99e-09,55;UBERON:0011216,3.55e-08,194;UBERON:0000344,2.43e-07,15;UBERON:0000077,2.57e-07,35;UBERON:0004684,2.98e-07,3;UBERON:0002275,2.98e-07,3;UBERON:0003350,4.74e-07,9;UBERON:0004808,4.74e-07,9;UBERON:0001277,4.74e-07,9;UBERON:0007811,4.82e-07,36;UBERON:0000490,8.35e-07,66 | |||
|phase1_expression=0,0,0,0,0,3.86122325397347,1.63528848416868,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,0.255129870453209,0,0,1.59992422793407,0.68822784320151,1.14846392823004,0.86152399231815,1.29282739611533,0,0.252030129759931,1.77384408524244,0,0,0,14.731432607315,14.7948834369058,12.8626694445293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0958454710182364,0,1.10115880999389,1.78762273319263,1.68967186581868,0,0,0,0.837548997004143,1.12552522006336,0.30559649555362,0,0,0,0.075726193333184,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517875767294343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17112318804619,1.46612694769419,1.27728527604296,0,0,0,1.49790639404823,10.5225138648284,0,1.73824320192276,1.53429274398198,1.24672826735736,7.30085683804909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.474529061544512,0,0,0,0,2.69645822596266,0.216138049874694,1.39398891278057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.575392274901621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0.937693492737625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329940245945071,0,0,0,0,0,0,0,0,0,0,0,0,1.02131881726136,0,0,0,0,0,0,0,0.23467170806371,0.21183207086382,0,0.49465875882444,0.484393280087717,0.0603129249281559,0,0,0.874442509889552,1.11255181206306,0,0,0,0,0.136694227721025,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16653475962614,0,0,0,0,0,0,0,0,0,0,0,0,3.47612232690996,0,1.33524244314275,2.20865399062252,1.9692936523423,0.993406773906324,2.52410443991935,1.18151621739662,2.82706059854813,2.74344503957999,2.82313318383153,1.26695244961678,2.21287235772758,1.63627663054197,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37016503954128,0.755393897389701,0,0.45032120322422,0.906284817968409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941093804153306,0,0.182927972872773,0,0,0,0,0,0,0.154936841185966,0,0.499621155875892,0,0.214871054048298,0,0,0 | |||
|short_description=p@chr9:44929248..44929260,+ | |||
}} |
Revision as of 18:00, 14 September 2013
Short description: | p@chr9:44929248..44929260, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:44929248..44929260, + |
Coexpression cluster: | MCL_coexpression_mm9:105 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal crypt stem cell | 7.69e-09 | 3 |
raphe nuclei neuron | 2.98e-07 | 3 |
intestinal epithelial cell | 4.74e-07 | 9 |
epithelial cell of alimentary canal | 4.74e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.68e-12 | 23 |
neck | 1.68e-12 | 23 |
respiratory system epithelium | 1.68e-12 | 23 |
hemolymphoid system gland | 1.68e-12 | 23 |
pharyngeal epithelium | 1.68e-12 | 23 |
thymic region | 1.68e-12 | 23 |
pharyngeal gland | 1.68e-12 | 23 |
entire pharyngeal arch endoderm | 1.68e-12 | 23 |
thymus primordium | 1.68e-12 | 23 |
early pharyngeal endoderm | 1.68e-12 | 23 |
pharynx | 7.21e-12 | 24 |
gland of gut | 7.21e-12 | 24 |
upper respiratory tract | 7.21e-12 | 24 |
chordate pharynx | 7.21e-12 | 24 |
pharyngeal arch system | 7.21e-12 | 24 |
pharyngeal region of foregut | 7.21e-12 | 24 |
segment of respiratory tract | 2.97e-10 | 27 |
hemopoietic organ | 2.30e-09 | 29 |
immune organ | 2.30e-09 | 29 |
gut epithelium | 5.99e-09 | 55 |
organ system subdivision | 3.55e-08 | 194 |
mucosa | 2.43e-07 | 15 |
mixed endoderm/mesoderm-derived structure | 2.57e-07 | 35 |
raphe nuclei | 2.98e-07 | 3 |
reticular formation | 2.98e-07 | 3 |
epithelium of mucosa | 4.74e-07 | 9 |
gastrointestinal system epithelium | 4.74e-07 | 9 |
intestinal epithelium | 4.74e-07 | 9 |
craniocervical region | 4.82e-07 | 36 |
unilaminar epithelium | 8.35e-07 | 66 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.